data_J1L
#

_chem_comp.id                                   J1L
_chem_comp.name                                 "5'-{[(2R,4R)-1-{2-[(2-amino-7,7-dimethyl-4-oxo-3,4,7,8-tetrahydropteridine-6-carbonyl)amino]ethyl}-2-carboxypiperidin-4-yl]sulfonyl}-5'-deoxyadenosine"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C27 H36 N12 O9 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-10-09
_chem_comp.pdbx_modified_date                   2020-11-27
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       704.715
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    J1L
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7KDR
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
J1L  C01   C1   C  0  1  N  N  N   9.726  10.685  23.351   -1.171  -3.561   2.117  C01   J1L   1  
J1L  C1    C2   C  0  1  N  N  S  12.944   4.816  20.938    3.897   0.236  -1.035  C1    J1L   2  
J1L  C10   C3   C  0  1  N  N  N  13.681   6.159  20.906    3.159  -1.059  -1.382  C10   J1L   3  
J1L  C11   C4   C  0  1  N  N  R  11.336   8.001  21.126    1.584  -3.231  -0.521  C11   J1L   4  
J1L  C12   C5   C  0  1  N  N  N  10.458   8.717  22.148    0.759  -3.881   0.593  C12   J1L   5  
J1L  C13   C6   C  0  1  N  N  R  10.819  10.192  22.348   -0.345  -2.917   1.034  C13   J1L   6  
J1L  C14   C7   C  0  1  N  N  N  11.826  10.280  20.118   -0.443  -1.929  -1.177  C14   J1L   7  
J1L  C15   C8   C  0  1  N  N  N  11.577   8.815  19.884    0.657  -2.864  -1.683  C15   J1L   8  
J1L  C16   C9   C  0  1  N  N  N  11.025  12.369  21.206   -2.355  -1.784   0.302  C16   J1L   9  
J1L  C18   C10  C  0  1  N  N  N  12.085  14.869  22.920   -5.514  -0.652  -1.301  C18   J1L  10  
J1L  C19   C11  C  0  1  N  N  N  10.539  20.826  21.777   -9.833   2.878   1.573  C19   J1L  11  
J1L  C2    C12  C  0  1  N  N  S  13.492   3.827  19.978    4.494   0.873  -2.310  C2    J1L  12  
J1L  C20   C13  C  0  1  N  N  N  11.040  18.805  20.522   -7.567   2.304   1.858  C20   J1L  13  
J1L  C21   C14  C  0  1  N  N  N  11.838  16.330  22.967   -6.661   0.158  -0.887  C21   J1L  14  
J1L  C22   C15  C  0  1  N  N  N  11.674  17.005  24.278   -7.846   0.287  -1.810  C22   J1L  15  
J1L  C23   C16  C  0  1  N  N  N  12.950  17.019  25.025   -8.015  -1.006  -2.610  C23   J1L  16  
J1L  C24   C17  C  0  1  N  N  N  10.583  16.373  25.106   -7.624   1.457  -2.769  C24   J1L  17  
J1L  C25   C18  C  0  1  N  N  N  11.114  18.960  22.931   -8.933   1.371   0.079  C25   J1L  18  
J1L  C26   C19  C  0  1  N  N  N  11.267  18.213  21.804   -7.679   1.463   0.723  C26   J1L  19  
J1L  C27   C20  C  0  1  N  N  N  12.367  12.894  21.541   -3.353  -1.687  -0.854  C27   J1L  20  
J1L  C3    C21  C  0  1  N  N  R  12.321   3.450  18.971    5.845   1.456  -1.841  C3    J1L  21  
J1L  C4    C22  C  0  1  N  N  R  11.154   3.847  19.799    5.905   1.103  -0.338  C4    J1L  22  
J1L  C5    C23  C  0  1  Y  N  N   8.690   3.921  19.472    7.802  -0.498   0.115  C5    J1L  23  
J1L  C6    C24  C  0  1  Y  N  N   8.483   5.310  17.862    9.393   0.854   0.701  C6    J1L  24  
J1L  C7    C25  C  0  1  Y  N  N   8.060   6.150  16.859   10.568   1.508   1.107  C7    J1L  25  
J1L  C8    C26  C  0  1  Y  N  N  10.284   6.703  16.463    9.466   3.528   0.921  C8    J1L  26  
J1L  C9    C27  C  0  1  Y  N  N   9.856   5.217  18.111    8.262   1.637   0.415  C9    J1L  27  
J1L  N1    N1   N  0  1  Y  N  N   9.974   4.308  19.126    7.275   0.757   0.050  N1    J1L  28  
J1L  N10   N2   N  0  1  N  N  N  10.664  20.186  20.607   -8.659   2.998   2.250  N10   J1L  29  
J1L  N11   N3   N  0  1  N  N  N  11.650  16.888  21.820   -6.637   0.754   0.271  N11   J1L  30  
J1L  N12   N4   N  0  1  N  N  N  11.331  18.403  24.166   -9.054   0.529  -1.004  N12   J1L  31  
J1L  N2    N5   N  0  1  Y  N  N   7.777   4.493  18.729    9.044  -0.440   0.500  N2    J1L  32  
J1L  N28   N6   N  0  1  N  N  N  12.164  14.300  21.703   -4.501  -0.876  -0.440  N28   J1L  33  
J1L  N3    N7   N  0  1  N  N  N   6.736   6.304  16.552   11.713   0.789   1.403  N3    J1L  34  
J1L  N4    N8   N  0  1  Y  N  N   8.975   6.871  16.126   10.554   2.834   1.201  N4    J1L  35  
J1L  N5    N9   N  0  1  Y  N  N  10.812   5.900  17.434    8.344   2.958   0.537  N5    J1L  36  
J1L  N6    N10  N  0  1  N  N  N  10.805  10.912  21.025   -1.204  -2.598  -0.113  N6    J1L  37  
J1L  N8    N11  N  0  1  N  N  N  10.751  20.283  22.957   -9.960   2.086   0.525  N8    J1L  38  
J1L  N9    N12  N  0  1  N  N  N  10.172  22.140  21.737  -10.917   3.596   1.995  N9    J1L  39  
J1L  O01   O1   O  0  1  N  N  N   8.789  11.379  22.831   -2.234  -4.069   1.845  O01   J1L  40  
J1L  O02   O2   O  0  1  N  N  N  14.026   8.895  21.886    3.407  -2.114   1.022  O02   J1L  41  
J1L  O03   O3   O  0  1  N  N  N   9.858  10.374  24.550   -0.725  -3.576   3.383  O03   J1L  42  
J1L  O04   O4   O  0  1  N  N  N  12.705   6.982  23.428    1.374  -0.828   0.545  O04   J1L  43  
J1L  O1    O5   O  0  1  N  N  N  11.549   4.904  20.649    5.036  -0.044  -0.192  O1    J1L  44  
J1L  O2    O6   O  0  1  N  N  N  13.884   2.756  20.827    3.642   1.911  -2.797  O2    J1L  45  
J1L  O3    O7   O  0  1  N  N  N  12.252   2.068  18.833    5.869   2.873  -2.024  O3    J1L  46  
J1L  O4    O8   O  0  1  N  N  N  12.203  14.233  23.988   -5.474  -1.124  -2.422  O4    J1L  47  
J1L  O5    O9   O  0  1  N  N  N  11.128  18.330  19.401   -6.515   2.399   2.465  O5    J1L  48  
J1L  S1    S1   S  0  1  N  N  N  12.952   7.532  21.847    2.383  -1.731   0.114  S1    J1L  49  
J1L  H1    H1   H  0  1  N  N  N  13.065   4.403  21.950    3.223   0.936  -0.542  H1    J1L  50  
J1L  H10   H2   H  0  1  N  N  N  14.694   5.990  21.300    2.392  -0.851  -2.128  H10   J1L  51  
J1L  H10A  H3   H  0  0  N  N  N  13.745   6.476  19.855    3.868  -1.785  -1.781  H10A  J1L  52  
J1L  H11   H4   H  0  1  N  N  N  10.852   7.054  20.846    2.345  -3.930  -0.867  H11   J1L  53  
J1L  H12A  H5   H  0  0  N  N  N   9.413   8.659  21.809    0.310  -4.803   0.223  H12A  J1L  54  
J1L  H12   H6   H  0  1  N  N  N  10.559   8.201  23.114    1.406  -4.106   1.441  H12   J1L  55  
J1L  H02   H7   H  0  1  N  N  N  11.811  10.275  22.816    0.105  -2.001   1.417  H02   J1L  56  
J1L  H14   H8   H  0  1  N  N  N  12.820  10.398  20.573    0.007  -1.018  -0.783  H14   J1L  57  
J1L  H14A  H9   H  0  0  N  N  N  11.803  10.799  19.148   -1.113  -1.677  -1.999  H14A  J1L  58  
J1L  H15A  H10  H  0  0  N  N  N  10.693   8.719  19.237    1.231  -2.362  -2.462  H15A  J1L  59  
J1L  H15   H11  H  0  1  N  N  N  12.455   8.398  19.369    0.207  -3.770  -2.089  H15   J1L  60  
J1L  H16A  H12  H  0  0  N  N  N  10.725  12.852  20.264   -2.015  -0.785   0.573  H16A  J1L  61  
J1L  H16   H13  H  0  1  N  N  N  10.351  12.691  22.014   -2.838  -2.250   1.161  H16   J1L  62  
J1L  H2    H14  H  0  1  N  N  N  14.342   4.245  19.419    4.648   0.115  -3.079  H2    J1L  63  
J1L  H23B  H15  H  0  0  N  N  N  12.804  17.523  25.992   -8.001  -1.859  -1.930  H23B  J1L  64  
J1L  H23A  H16  H  0  0  N  N  N  13.285  15.986  25.198   -8.966  -0.982  -3.143  H23A  J1L  65  
J1L  H23   H17  H  0  1  N  N  N  13.711  17.558  24.441   -7.199  -1.099  -3.327  H23   J1L  66  
J1L  H24B  H18  H  0  0  N  N  N  10.497  16.903  26.066   -6.724   1.279  -3.358  H24B  J1L  67  
J1L  H24   H19  H  0  1  N  N  N   9.628  16.437  24.564   -8.481   1.549  -3.436  H24   J1L  68  
J1L  H24A  H20  H  0  0  N  N  N  10.829  15.317  25.292   -7.507   2.378  -2.198  H24A  J1L  69  
J1L  H27   H21  H  0  1  N  N  N  12.740  12.444  22.473   -2.870  -1.221  -1.713  H27   J1L  70  
J1L  H27A  H22  H  0  0  N  N  N  13.079  12.694  20.726   -3.694  -2.686  -1.125  H27A  J1L  71  
J1L  H3    H23  H  0  1  N  N  N  12.398   4.010  18.027    6.670   0.987  -2.377  H3    J1L  72  
J1L  H4    H24  H  0  1  N  N  N  10.879   2.983  20.421    5.539   1.936   0.262  H4    J1L  73  
J1L  H5    H25  H  0  1  N  N  N   8.467   3.225  20.267    7.267  -1.408  -0.116  H5    J1L  74  
J1L  H8    H26  H  0  1  N  N  N  10.996   7.278  15.889    9.499   4.604   1.010  H8    J1L  75  
J1L  HN10  H27  H  0  0  N  N  N  10.489  20.690  19.761   -8.605   3.586   3.020  HN10  J1L  76  
J1L  HN12  H28  H  0  0  N  N  N  12.077  18.918  24.588   -9.901   0.113  -1.228  HN12  J1L  77  
J1L  HN28  H29  H  0  0  N  N  N  12.078  14.876  20.890   -4.532  -0.500   0.454  HN28  J1L  78  
J1L  HN3   H30  H  0  1  N  N  N   6.641   6.955  15.799   11.711  -0.178   1.330  HN3   J1L  79  
J1L  HN3A  H31  H  0  0  N  N  N   6.352   5.422  16.280   12.518   1.253   1.682  HN3A  J1L  80  
J1L  HN9   H33  H  0  1  N  N  N  10.072  22.657  22.587  -11.762   3.519   1.526  HN9   J1L  81  
J1L  HN9A  H34  H  0  0  N  N  N  10.003  22.585  20.858  -10.840   4.182   2.764  HN9A  J1L  82  
J1L  H7    H35  H  0  1  N  N  N   9.138  10.736  25.053   -1.290  -4.001   4.042  H7    J1L  83  
J1L  HO2   H36  H  0  1  N  N  N  14.583   3.046  21.401    3.969   2.346  -3.597  HO2   J1L  84  
J1L  HO3   H37  H  0  1  N  N  N  12.983   1.765  18.307    5.834   3.151  -2.949  HO3   J1L  85  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
J1L  N4   C8    SING  Y  N   1  
J1L  N4   C7    DOUB  Y  N   2  
J1L  C8   N5    DOUB  Y  N   3  
J1L  N3   C7    SING  N  N   4  
J1L  C7   C6    SING  Y  N   5  
J1L  N5   C9    SING  Y  N   6  
J1L  C6   C9    DOUB  Y  N   7  
J1L  C6   N2    SING  Y  N   8  
J1L  C9   N1    SING  Y  N   9  
J1L  N2   C5    DOUB  Y  N  10  
J1L  O3   C3    SING  N  N  11  
J1L  C3   C4    SING  N  N  12  
J1L  C3   C2    SING  N  N  13  
J1L  N1   C5    SING  Y  N  14  
J1L  N1   C4    SING  N  N  15  
J1L  O5   C20   DOUB  N  N  16  
J1L  C4   O1    SING  N  N  17  
J1L  C15  C14   SING  N  N  18  
J1L  C15  C11   SING  N  N  19  
J1L  C2   O2    SING  N  N  20  
J1L  C2   C1    SING  N  N  21  
J1L  C14  N6    SING  N  N  22  
J1L  C20  N10   SING  N  N  23  
J1L  C20  C26   SING  N  N  24  
J1L  N10  C19   SING  N  N  25  
J1L  O1   C1    SING  N  N  26  
J1L  C10  C1    SING  N  N  27  
J1L  C10  S1    SING  N  N  28  
J1L  N6   C16   SING  N  N  29  
J1L  N6   C13   SING  N  N  30  
J1L  C11  S1    SING  N  N  31  
J1L  C11  C12   SING  N  N  32  
J1L  C16  C27   SING  N  N  33  
J1L  C27  N28   SING  N  N  34  
J1L  N28  C18   SING  N  N  35  
J1L  N9   C19   SING  N  N  36  
J1L  C19  N8    DOUB  N  N  37  
J1L  C26  N11   SING  N  N  38  
J1L  C26  C25   DOUB  N  N  39  
J1L  N11  C21   DOUB  N  N  40  
J1L  S1   O02   DOUB  N  N  41  
J1L  S1   O04   DOUB  N  N  42  
J1L  C12  C13   SING  N  N  43  
J1L  C13  C01   SING  N  N  44  
J1L  O01  C01   DOUB  N  N  45  
J1L  C18  C21   SING  N  N  46  
J1L  C18  O4    DOUB  N  N  47  
J1L  C25  N8    SING  N  N  48  
J1L  C25  N12   SING  N  N  49  
J1L  C21  C22   SING  N  N  50  
J1L  C01  O03   SING  N  N  51  
J1L  N12  C22   SING  N  N  52  
J1L  C22  C23   SING  N  N  53  
J1L  C22  C24   SING  N  N  54  
J1L  C1   H1    SING  N  N  55  
J1L  C10  H10   SING  N  N  56  
J1L  C10  H10A  SING  N  N  57  
J1L  C11  H11   SING  N  N  58  
J1L  C12  H12A  SING  N  N  59  
J1L  C12  H12   SING  N  N  60  
J1L  C13  H02   SING  N  N  61  
J1L  C14  H14   SING  N  N  62  
J1L  C14  H14A  SING  N  N  63  
J1L  C15  H15A  SING  N  N  64  
J1L  C15  H15   SING  N  N  65  
J1L  C16  H16A  SING  N  N  66  
J1L  C16  H16   SING  N  N  67  
J1L  C2   H2    SING  N  N  68  
J1L  C23  H23B  SING  N  N  69  
J1L  C23  H23A  SING  N  N  70  
J1L  C23  H23   SING  N  N  71  
J1L  C24  H24B  SING  N  N  72  
J1L  C24  H24   SING  N  N  73  
J1L  C24  H24A  SING  N  N  74  
J1L  C27  H27   SING  N  N  75  
J1L  C27  H27A  SING  N  N  76  
J1L  C3   H3    SING  N  N  77  
J1L  C4   H4    SING  N  N  78  
J1L  C5   H5    SING  N  N  79  
J1L  C8   H8    SING  N  N  80  
J1L  N10  HN10  SING  N  N  81  
J1L  N12  HN12  SING  N  N  82  
J1L  N28  HN28  SING  N  N  83  
J1L  N3   HN3   SING  N  N  84  
J1L  N3   HN3A  SING  N  N  85  
J1L  N9   HN9   SING  N  N  86  
J1L  N9   HN9A  SING  N  N  87  
J1L  O03  H7    SING  N  N  88  
J1L  O2   HO2   SING  N  N  89  
J1L  O3   HO3   SING  N  N  90  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
J1L  SMILES            ACDLabs               12.01  "C(O)(C4CC(S(CC1C(O)C(C(O1)n2cnc3c2ncnc3N)O)(=O)=O)CCN4CCNC(C=6C(C)(C)NC=5N=C(NC(C=5N=6)=O)N)=O)=O"  
J1L  InChI             InChI                 1.03   "InChI=1S/C27H36N12O9S/c1-27(2)18(34-15-20(37-27)35-26(29)36-22(15)42)23(43)30-4-6-38-5-3-11(7-12(38)25(44)45)49(46,47)8-13-16(40)17(41)24(48-13)39-10-33-14-19(28)31-9-32-21(14)39/h9-13,16-17,24,40-41H,3-8H2,1-2H3,(H,30,43)(H,44,45)(H2,28,31,32)(H4,29,35,36,37,42)/t11-,12-,13-,16-,17-,24-/m1/s1"  
J1L  InChIKey          InChI                 1.03   LIEKVCRXNQELKW-NERDUYAPSA-N  
J1L  SMILES_CANONICAL  CACTVS                3.385  "CC1(C)NC2=C(N=C1C(=O)NCCN3CC[C@H](C[C@@H]3C(O)=O)[S](=O)(=O)C[C@H]4O[C@H]([C@H](O)[C@@H]4O)n5cnc6c(N)ncnc56)C(=O)NC(=N2)N"  
J1L  SMILES            CACTVS                3.385  "CC1(C)NC2=C(N=C1C(=O)NCCN3CC[CH](C[CH]3C(O)=O)[S](=O)(=O)C[CH]4O[CH]([CH](O)[CH]4O)n5cnc6c(N)ncnc56)C(=O)NC(=N2)N"  
J1L  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CC1(C(=NC2=C(N1)N=C(NC2=O)N)C(=O)NCCN3CC[C@H](C[C@@H]3C(=O)O)S(=O)(=O)C[C@@H]4[C@H]([C@H]([C@@H](O4)n5cnc6c5ncnc6N)O)O)C"  
J1L  SMILES            "OpenEye OEToolkits"  2.0.7  "CC1(C(=NC2=C(N1)N=C(NC2=O)N)C(=O)NCCN3CCC(CC3C(=O)O)S(=O)(=O)CC4C(C(C(O4)n5cnc6c5ncnc6N)O)O)C"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
J1L  "SYSTEMATIC NAME"  ACDLabs               12.01  "5'-{[(2R,4R)-1-{2-[(2-amino-7,7-dimethyl-4-oxo-3,4,7,8-tetrahydropteridine-6-carbonyl)amino]ethyl}-2-carboxypiperidin-4-yl]sulfonyl}-5'-deoxyadenosine"  
J1L  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "(2~{R},4~{R})-4-[[(2~{S},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methylsulfonyl]-1-[2-[(2-azanyl-7,7-dimethyl-4-oxidanylidene-3,8-dihydropteridin-6-yl)carbonylamino]ethyl]piperidine-2-carboxylic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
J1L  "Create component"  2020-10-09  RCSB  
J1L  "Initial release"   2020-12-02  RCSB  
##
