data_IYL
# 
_chem_comp.id                                    IYL 
_chem_comp.name                                  "[9-[2-carboxy-5-[2-[2-(5-oxidanylpentoxy)ethoxy]ethylcarbamoyl]phenyl]-6-(dimethylamino)xanthen-3-ylidene]-dimethyl-azanium" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C34 H42 N3 O7" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    1 
_chem_comp.pdbx_initial_date                     2022-04-20 
_chem_comp.pdbx_modified_date                    2023-02-17 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        604.713 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     IYL 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7ZIZ 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
IYL N1  N1  N 0 1 N N N -3.290  19.508 -28.892 2.270   -2.732 1.304  N1  IYL 1  
IYL C7  C1  C 0 1 Y N N 0.576   16.684 -29.333 -1.792  -0.616 -0.324 C7  IYL 2  
IYL C8  C2  C 0 1 Y N N 1.105   17.446 -30.396 -1.543  -1.112 -1.620 C8  IYL 3  
IYL N2  N2  N 0 1 N N N 1.627   10.679 -31.782 -8.097  -2.146 0.236  N2  IYL 4  
IYL C9  C3  C 0 1 Y N N 0.329   18.467 -30.949 -0.410  -1.886 -1.860 C9  IYL 5  
IYL O1  O1  O 0 1 N N N -7.983  20.489 -24.623 7.520   -1.849 0.016  O1  IYL 6  
IYL C1  C4  C 0 1 N N N 2.748   16.138 -22.504 -3.928  6.430  0.998  C1  IYL 7  
IYL O5  O2  O 0 1 N N N 2.569   17.313 -32.240 -3.471  -0.140 -2.510 O5  IYL 8  
IYL C5  C5  C 0 1 N N N 1.648   15.386 -27.413 -2.903  1.591  0.119  C5  IYL 9  
IYL C6  C6  C 0 1 N N N 1.250   15.464 -28.763 -2.993  0.199  -0.061 C6  IYL 10 
IYL C4  C7  C 0 1 N N N 1.579   16.456 -26.540 -1.654  2.246  0.046  C4  IYL 11 
IYL O4  O3  O 0 1 N N N 3.405   16.873 -30.246 -2.244  -1.289 -3.958 O4  IYL 12 
IYL C3  C8  C 0 1 N N N 1.961   16.331 -25.212 -1.584  3.586  0.215  C3  IYL 13 
IYL O3  O4  O 0 1 N N N -3.380  17.355 -28.251 0.970   -1.559 2.668  O3  IYL 14 
IYL C2  C9  C 0 1 N N N 2.473   15.125 -24.729 -2.800  4.355  0.474  C2  IYL 15 
IYL N   N3  N 1 1 N N N 2.865   15.005 -23.403 -2.728  5.670  0.639  N   IYL 16 
IYL C   C10 C 0 1 N N N 3.346   13.736 -22.884 -1.449  6.362  0.461  C   IYL 17 
IYL O   O5  O 0 1 N N N -5.759  20.689 -26.474 5.106   -3.139 0.893  O   IYL 18 
IYL C10 C11 C 0 1 Y N N -0.918  18.776 -30.432 0.468   -2.166 -0.833 C10 IYL 19 
IYL C11 C12 C 0 1 Y N N -1.434  18.048 -29.380 0.229   -1.677 0.454  C11 IYL 20 
IYL C12 C13 C 0 1 N N N -2.790  18.273 -28.805 1.177   -1.983 1.549  C12 IYL 21 
IYL C13 C14 C 0 1 N N N -4.612  19.826 -28.369 3.209   -3.034 2.387  C13 IYL 22 
IYL C14 C15 C 0 1 N N N -4.489  20.263 -26.926 4.353   -3.893 1.845  C14 IYL 23 
IYL C15 C16 C 0 1 N N N -5.718  21.037 -25.077 6.205   -3.853 0.323  C15 IYL 24 
IYL C16 C17 C 0 1 N N N -7.029  21.534 -24.594 6.934   -2.953 -0.676 C16 IYL 25 
IYL C17 C18 C 0 1 N N N -8.120  19.768 -23.418 8.229   -0.942 -0.830 C17 IYL 26 
IYL C18 C19 C 0 1 N N N -9.370  18.917 -23.545 8.810   0.194  0.013  C18 IYL 27 
IYL C19 C20 C 0 1 N N N -10.674 19.675 -23.755 9.570   1.165  -0.893 C19 IYL 28 
IYL C20 C21 C 0 1 N N N -11.896 18.748 -23.884 10.151  2.302  -0.049 C20 IYL 29 
IYL C21 C22 C 0 1 N N N -13.185 19.407 -24.048 10.910  3.273  -0.956 C21 IYL 30 
IYL C22 C23 C 0 1 Y N N -0.694  17.001 -28.842 -0.900  -0.903 0.709  C22 IYL 31 
IYL C23 C24 C 0 1 N N N 2.422   17.099 -31.029 -2.483  -0.814 -2.721 C23 IYL 32 
IYL C24 C25 C 0 1 N N N 2.567   14.045 -25.605 -4.049  3.704  0.548  C24 IYL 33 
IYL C25 C26 C 0 1 N N N 2.154   14.170 -26.919 -4.124  2.353  0.377  C25 IYL 34 
IYL C26 C27 C 0 1 Y N N 1.861   13.102 -29.027 -5.447  0.394  0.275  C26 IYL 35 
IYL C27 C28 C 0 1 Y N N 1.348   14.267 -29.602 -4.323  -0.416 0.022  C27 IYL 36 
IYL C28 C29 C 0 1 Y N N 0.918   14.196 -30.922 -4.477  -1.798 -0.156 C28 IYL 37 
IYL C29 C30 C 0 1 Y N N 1.003   13.018 -31.648 -5.717  -2.359 -0.084 C29 IYL 38 
IYL C30 C31 C 0 1 Y N N 1.517   11.856 -31.062 -6.837  -1.562 0.166  C30 IYL 39 
IYL C31 C32 C 0 1 N N N 1.240   10.624 -33.175 -9.288  -1.303 0.370  C31 IYL 40 
IYL C32 C33 C 0 1 N N N 1.712   9.410  -31.082 -8.233  -3.603 0.177  C32 IYL 41 
IYL C33 C34 C 0 1 Y N N 1.934   11.919 -29.737 -6.702  -0.192 0.344  C33 IYL 42 
IYL O2  O6  O 0 1 N N N -14.222 18.451 -24.172 11.453  4.334  -0.168 O2  IYL 43 
IYL O6  O7  O 0 1 N N N 2.278   13.051 -27.717 -5.318  1.727  0.448  O6  IYL 44 
IYL H1  H1  H 0 1 N N N -2.747  20.228 -29.324 2.434   -3.074 0.411  H1  IYL 45 
IYL H2  H2  H 0 1 N N N 0.707   19.024 -31.793 -0.218  -2.267 -2.852 H2  IYL 46 
IYL H3  H3  H 0 1 N N N 3.105   15.852 -21.504 -4.013  6.482  2.084  H3  IYL 47 
IYL H4  H4  H 0 1 N N N 3.355   16.972 -22.885 -3.855  7.438  0.591  H4  IYL 48 
IYL H5  H5  H 0 1 N N N 1.695   16.449 -22.442 -4.808  5.935  0.588  H5  IYL 49 
IYL H6  H6  H 0 1 N N N 1.220   17.409 -26.899 -0.756  1.677  -0.145 H6  IYL 50 
IYL H7  H7  H 0 1 N N N 4.216   16.899 -30.740 -2.887  -1.067 -4.646 H7  IYL 51 
IYL H8  H8  H 0 1 N N N 1.861   17.175 -24.545 -0.629  4.087  0.160  H8  IYL 52 
IYL H9  H9  H 0 1 N N N 3.604   13.848 -21.821 -1.045  6.132  -0.525 H9  IYL 53 
IYL H10 H10 H 0 1 N N N 2.560   12.974 -22.992 -1.602  7.438  0.550  H10 IYL 54 
IYL H11 H11 H 0 1 N N N 4.238   13.424 -23.447 -0.747  6.031  1.227  H11 IYL 55 
IYL H12 H12 H 0 1 N N N -1.489  19.590 -30.854 1.346   -2.766 -1.025 H12 IYL 56 
IYL H13 H13 H 0 1 N N N -5.056  20.639 -28.962 3.611   -2.105 2.789  H13 IYL 57 
IYL H14 H14 H 0 1 N N N -5.255  18.935 -28.429 2.690   -3.577 3.177  H14 IYL 58 
IYL H15 H15 H 0 1 N N N -4.141  19.420 -26.312 3.945   -4.782 1.364  H15 IYL 59 
IYL H16 H16 H 0 1 N N N -3.771  21.093 -26.850 5.004   -4.193 2.668  H16 IYL 60 
IYL H17 H17 H 0 1 N N N -5.439  20.145 -24.496 6.893   -4.151 1.114  H17 IYL 61 
IYL H18 H18 H 0 1 N N N -4.963  21.823 -24.928 5.834   -4.740 -0.190 H18 IYL 62 
IYL H19 H19 H 0 1 N N N -6.922  21.901 -23.563 6.225   -2.583 -1.417 H19 IYL 63 
IYL H20 H20 H 0 1 N N N -7.369  22.355 -25.242 7.716   -3.525 -1.176 H20 IYL 64 
IYL H21 H21 H 0 1 N N N -7.241  19.126 -23.261 9.038   -1.472 -1.333 H21 IYL 65 
IYL H22 H22 H 0 1 N N N -8.222  20.464 -22.572 7.547   -0.530 -1.574 H22 IYL 66 
IYL H23 H23 H 0 1 N N N -9.469  18.325 -22.623 8.001   0.724  0.516  H23 IYL 67 
IYL H24 H24 H 0 1 N N N -9.232  18.241 -24.402 9.492   -0.217 0.757  H24 IYL 68 
IYL H25 H25 H 0 1 N N N -10.588 20.271 -24.675 10.379  0.636  -1.396 H25 IYL 69 
IYL H26 H26 H 0 1 N N N -10.832 20.345 -22.897 8.888   1.577  -1.637 H26 IYL 70 
IYL H27 H27 H 0 1 N N N -11.947 18.131 -22.975 9.342   2.832  0.453  H27 IYL 71 
IYL H28 H28 H 0 1 N N N -11.736 18.100 -24.759 10.833  1.890  0.694  H28 IYL 72 
IYL H29 H29 H 0 1 N N N -13.159 20.031 -24.953 11.719  2.743  -1.459 H29 IYL 73 
IYL H30 H30 H 0 1 N N N -13.381 20.041 -23.171 10.228  3.684  -1.700 H30 IYL 74 
IYL H31 H31 H 0 1 N N N -1.108  16.422 -28.030 -1.087  -0.530 1.705  H31 IYL 75 
IYL H32 H32 H 0 1 N N N 2.965   13.104 -25.255 -4.945  4.275  0.739  H32 IYL 76 
IYL H33 H33 H 0 1 N N N 0.509   15.078 -31.392 -3.614  -2.417 -0.350 H33 IYL 77 
IYL H34 H34 H 0 1 N N N 0.670   12.997 -32.675 -5.834  -3.423 -0.221 H34 IYL 78 
IYL H35 H35 H 0 1 N N N 1.212   11.643 -33.589 -9.503  -1.144 1.426  H35 IYL 79 
IYL H36 H36 H 0 1 N N N 1.970   10.021 -33.735 -9.110  -0.343 -0.114 H36 IYL 80 
IYL H37 H37 H 0 1 N N N 0.243   10.166 -33.261 -10.137 -1.797 -0.104 H37 IYL 81 
IYL H38 H38 H 0 1 N N N 2.013   9.586  -30.039 -7.258  -4.052 -0.012 H38 IYL 82 
IYL H39 H39 H 0 1 N N N 0.730   8.914  -31.102 -8.624  -3.970 1.125  H39 IYL 83 
IYL H40 H40 H 0 1 N N N 2.457   8.768  -31.575 -8.918  -3.871 -0.627 H40 IYL 84 
IYL H41 H41 H 0 1 N N N 2.320   11.032 -29.257 -7.573  0.416  0.536  H41 IYL 85 
IYL H42 H42 H 0 1 N N N -15.054 18.897 -24.278 11.949  4.989  -0.678 H42 IYL 86 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
IYL C31 N2  SING N N 1  
IYL O5  C23 DOUB N N 2  
IYL N2  C32 SING N N 3  
IYL N2  C30 SING N N 4  
IYL C29 C30 SING Y N 5  
IYL C29 C28 DOUB Y N 6  
IYL C30 C33 DOUB Y N 7  
IYL C23 C8  SING N N 8  
IYL C23 O4  SING N N 9  
IYL C9  C10 DOUB Y N 10 
IYL C9  C8  SING Y N 11 
IYL C28 C27 SING Y N 12 
IYL C10 C11 SING Y N 13 
IYL C8  C7  DOUB Y N 14 
IYL C33 C26 SING Y N 15 
IYL C27 C26 DOUB Y N 16 
IYL C27 C6  SING N N 17 
IYL C11 C22 DOUB Y N 18 
IYL C11 C12 SING N N 19 
IYL C7  C22 SING Y N 20 
IYL C7  C6  SING N N 21 
IYL C26 O6  SING N N 22 
IYL N1  C12 SING N N 23 
IYL N1  C13 SING N N 24 
IYL C12 O3  DOUB N N 25 
IYL C6  C5  DOUB N N 26 
IYL C13 C14 SING N N 27 
IYL O6  C25 SING N N 28 
IYL C5  C25 SING N N 29 
IYL C5  C4  SING N N 30 
IYL C14 O   SING N N 31 
IYL C25 C24 DOUB N N 32 
IYL C4  C3  DOUB N N 33 
IYL O   C15 SING N N 34 
IYL C24 C2  SING N N 35 
IYL C3  C2  SING N N 36 
IYL C15 C16 SING N N 37 
IYL C2  N   DOUB N N 38 
IYL O1  C16 SING N N 39 
IYL O1  C17 SING N N 40 
IYL O2  C21 SING N N 41 
IYL C21 C20 SING N N 42 
IYL C20 C19 SING N N 43 
IYL C19 C18 SING N N 44 
IYL C18 C17 SING N N 45 
IYL N   C   SING N N 46 
IYL N   C1  SING N N 47 
IYL N1  H1  SING N N 48 
IYL C9  H2  SING N N 49 
IYL C1  H3  SING N N 50 
IYL C1  H4  SING N N 51 
IYL C1  H5  SING N N 52 
IYL C4  H6  SING N N 53 
IYL O4  H7  SING N N 54 
IYL C3  H8  SING N N 55 
IYL C   H9  SING N N 56 
IYL C   H10 SING N N 57 
IYL C   H11 SING N N 58 
IYL C10 H12 SING N N 59 
IYL C13 H13 SING N N 60 
IYL C13 H14 SING N N 61 
IYL C14 H15 SING N N 62 
IYL C14 H16 SING N N 63 
IYL C15 H17 SING N N 64 
IYL C15 H18 SING N N 65 
IYL C16 H19 SING N N 66 
IYL C16 H20 SING N N 67 
IYL C17 H21 SING N N 68 
IYL C17 H22 SING N N 69 
IYL C18 H23 SING N N 70 
IYL C18 H24 SING N N 71 
IYL C19 H25 SING N N 72 
IYL C19 H26 SING N N 73 
IYL C20 H27 SING N N 74 
IYL C20 H28 SING N N 75 
IYL C21 H29 SING N N 76 
IYL C21 H30 SING N N 77 
IYL C22 H31 SING N N 78 
IYL C24 H32 SING N N 79 
IYL C28 H33 SING N N 80 
IYL C29 H34 SING N N 81 
IYL C31 H35 SING N N 82 
IYL C31 H36 SING N N 83 
IYL C31 H37 SING N N 84 
IYL C32 H38 SING N N 85 
IYL C32 H39 SING N N 86 
IYL C32 H40 SING N N 87 
IYL C33 H41 SING N N 88 
IYL O2  H42 SING N N 89 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
IYL InChI            InChI                1.06  "InChI=1S/C34H41N3O7/c1-36(2)24-9-12-27-30(21-24)44-31-22-25(37(3)4)10-13-28(31)32(27)29-20-23(8-11-26(29)34(40)41)33(39)35-14-17-43-19-18-42-16-7-5-6-15-38/h8-13,20-22,38H,5-7,14-19H2,1-4H3,(H-,35,39,40,41)/p+1" 
IYL InChIKey         InChI                1.06  JWWZUBNFGVWRTE-UHFFFAOYSA-O                                                                                                                                                                                          
IYL SMILES_CANONICAL CACTVS               3.385 "CN(C)c1ccc2c(OC3=CC(C=CC3=C2c4cc(ccc4C(O)=O)C(=O)NCCOCCOCCCCCO)=[N+](C)C)c1"                                                                                                                                        
IYL SMILES           CACTVS               3.385 "CN(C)c1ccc2c(OC3=CC(C=CC3=C2c4cc(ccc4C(O)=O)C(=O)NCCOCCOCCCCCO)=[N+](C)C)c1"                                                                                                                                        
IYL SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN(C)c1ccc2c(c1)OC3=CC(=[N+](C)C)C=CC3=C2c4cc(ccc4C(=O)O)C(=O)NCCOCCOCCCCCO"                                                                                                                                        
IYL SMILES           "OpenEye OEToolkits" 2.0.7 "CN(C)c1ccc2c(c1)OC3=CC(=[N+](C)C)C=CC3=C2c4cc(ccc4C(=O)O)C(=O)NCCOCCOCCCCCO"                                                                                                                                        
# 
_pdbx_chem_comp_identifier.comp_id           IYL 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "[9-[2-carboxy-5-[2-[2-(5-oxidanylpentoxy)ethoxy]ethylcarbamoyl]phenyl]-6-(dimethylamino)xanthen-3-ylidene]-dimethyl-azanium" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
IYL "Create component"  2022-04-20 PDBE 
IYL "Modify descriptor" 2022-08-22 RCSB 
IYL "Initial release"   2023-02-22 RCSB 
# 
