data_I6L
# 
_chem_comp.id                                    I6L 
_chem_comp.name                                  "~{N}-[(1~{S})-1-(1~{H}-benzimidazol-2-yl)pentyl]-3,6,6-trimethyl-4-oxidanylidene-5,7-dihydro-1~{H}-indole-2-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C24 H30 N4 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-06-10 
_chem_comp.pdbx_modified_date                    2023-03-24 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        406.521 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     I6L 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7XUB 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
I6L C24 C1  C 0 1 N N N 48.847 5.022  114.476 -1.535 -4.360 1.649  C24 I6L 1  
I6L C27 C2  C 0 1 N N N 53.405 5.194  118.855 2.922  -2.034 -1.791 C27 I6L 2  
I6L C29 C3  C 0 1 N N N 58.543 6.452  116.741 5.929  3.276  1.303  C29 I6L 3  
I6L C30 C4  C 0 1 N N N 59.749 8.106  118.103 5.359  0.927  1.920  C30 I6L 4  
I6L C20 C5  C 0 1 N N N 58.096 6.595  119.213 5.752  1.528  -0.471 C20 I6L 5  
I6L C16 C6  C 0 1 Y N N 56.022 7.819  117.710 2.974  1.156  0.127  C16 I6L 6  
I6L C22 C7  C 0 1 N N N 49.171 5.882  116.831 -2.409 -2.204 0.736  C22 I6L 7  
I6L C21 C8  C 0 1 N N N 56.721 5.939  119.263 5.085  0.208  -0.825 C21 I6L 8  
I6L C18 C9  C 0 1 N N N 57.372 8.473  117.619 3.688  2.342  0.724  C18 I6L 9  
I6L C19 C10 C 0 1 N N N 58.416 7.390  117.934 5.178  2.018  0.863  C19 I6L 10 
I6L C13 C11 C 0 1 Y N N 53.785 7.431  117.359 1.472  -0.340 -0.514 C13 I6L 11 
I6L C8  C12 C 0 1 Y N N 49.473 8.339  116.872 -3.341 -0.131 -0.255 C8  I6L 12 
I6L C12 C13 C 0 1 N N N 52.438 7.694  116.769 0.179  -1.013 -0.695 C12 I6L 13 
I6L C10 C14 C 0 1 N N S 50.085 7.050  116.473 -2.230 -1.144 -0.352 C10 I6L 14 
I6L N7  N1  N 0 1 Y N N 49.554 8.889  118.101 -3.162 1.212  -0.130 N7  I6L 15 
I6L C5  C15 C 0 1 Y N N 48.351 10.214 116.733 -5.334 0.731  -0.169 C5  I6L 16 
I6L C3  C16 C 0 1 Y N N 47.378 12.299 117.414 -7.137 2.295  -0.017 C3  I6L 17 
I6L C4  C17 C 0 1 Y N N 47.609 11.345 116.430 -6.704 1.006  -0.139 C4  I6L 18 
I6L C1  C18 C 0 1 Y N N 48.646 11.027 119.047 -4.874 3.093  0.056  C1  I6L 19 
I6L C14 C19 C 0 1 Y N N 54.214 6.325  118.275 2.675  -0.781 -0.991 C14 I6L 20 
I6L C15 C20 C 0 1 Y N N 55.662 6.620  118.472 3.633  0.159  -0.592 C15 I6L 21 
I6L C2  C21 C 0 1 Y N N 47.889 12.141 118.700 -6.230 3.340  0.089  C2  I6L 22 
I6L C23 C22 C 0 1 N N N 49.376 4.715  115.872 -1.355 -3.299 0.560  C23 I6L 23 
I6L C25 C23 C 0 1 N N N 47.349 5.234  114.498 -0.481 -5.455 1.472  C25 I6L 24 
I6L C6  C24 C 0 1 Y N N 48.889 10.049 118.096 -4.415 1.789  -0.072 C6  I6L 25 
I6L N11 N2  N 0 1 N N N 51.420 6.870  117.033 -0.940 -0.473 -0.172 N11 I6L 26 
I6L N17 N3  N 0 1 Y N N 54.867 8.353  116.998 1.678  0.845  0.166  N17 I6L 27 
I6L N9  N4  N 0 1 Y N N 48.745 9.130  116.040 -4.611 -0.412 -0.283 N9  I6L 28 
I6L O26 O1  O 0 1 N N N 52.317 8.667  116.039 0.118  -2.057 -1.316 O26 I6L 29 
I6L O28 O2  O 0 1 N N N 56.509 4.934  119.930 5.705  -0.737 -1.268 O28 I6L 30 
I6L H1  H1  H 0 1 N N N 49.081 4.179  113.809 -1.418 -3.897 2.629  H1  I6L 31 
I6L H2  H2  H 0 1 N N N 49.334 5.934  114.099 -2.530 -4.797 1.569  H2  I6L 32 
I6L H3  H3  H 0 1 N N N 53.441 4.330  118.175 2.830  -1.812 -2.854 H3  I6L 33 
I6L H4  H4  H 0 1 N N N 53.822 4.909  119.832 3.926  -2.405 -1.584 H4  I6L 34 
I6L H5  H5  H 0 1 N N N 52.361 5.517  118.982 2.190  -2.793 -1.513 H5  I6L 35 
I6L H6  H6  H 0 1 N N N 59.290 5.675  116.963 5.537  3.616  2.262  H6  I6L 36 
I6L H7  H7  H 0 1 N N N 57.570 5.979  116.541 6.990  3.049  1.403  H7  I6L 37 
I6L H8  H8  H 0 1 N N N 58.861 7.024  115.857 5.793  4.060  0.557  H8  I6L 38 
I6L H9  H9  H 0 1 N N N 59.690 8.794  118.960 4.960  1.276  2.873  H9  I6L 39 
I6L H10 H10 H 0 1 N N N 60.543 7.366  118.281 4.825  0.029  1.610  H10 I6L 40 
I6L H11 H11 H 0 1 N N N 59.977 8.676  117.190 6.419  0.700  2.030  H11 I6L 41 
I6L H12 H12 H 0 1 N N N 58.852 5.802  119.315 6.828  1.382  -0.375 H12 I6L 42 
I6L H13 H13 H 0 1 N N N 58.171 7.285  120.066 5.549  2.263  -1.250 H13 I6L 43 
I6L H14 H14 H 0 1 N N N 48.124 6.214  116.775 -2.293 -1.742 1.717  H14 I6L 44 
I6L H15 H15 H 0 1 N N N 49.396 5.550  117.855 -3.404 -2.642 0.657  H15 I6L 45 
I6L H16 H16 H 0 1 N N N 57.532 8.870  116.606 3.563  3.207  0.072  H16 I6L 46 
I6L H17 H17 H 0 1 N N N 57.445 9.292  118.349 3.270  2.563  1.706  H17 I6L 47 
I6L H18 H18 H 0 1 N N N 50.181 7.057  115.377 -2.258 -1.621 -1.332 H18 I6L 48 
I6L H19 H19 H 0 1 N N N 50.032 8.495  118.886 -2.312 1.678  -0.088 H19 I6L 49 
I6L H20 H20 H 0 1 N N N 46.794 13.176 117.178 -8.197 2.503  0.010  H20 I6L 50 
I6L H21 H21 H 0 1 N N N 47.213 11.484 115.435 -7.419 0.199  -0.212 H21 I6L 51 
I6L H22 H22 H 0 1 N N N 49.040 10.925 120.047 -4.172 3.911  0.130  H22 I6L 52 
I6L H23 H23 H 0 1 N N N 47.693 12.900 119.443 -6.588 4.354  0.185  H23 I6L 53 
I6L H24 H24 H 0 1 N N N 48.847 3.835  116.266 -0.360 -2.862 0.640  H24 I6L 54 
I6L H25 H25 H 0 1 N N N 50.452 4.496  115.804 -1.472 -3.762 -0.420 H25 I6L 55 
I6L H26 H26 H 0 1 N N N 46.994 5.453  113.480 0.514  -5.017 1.552  H26 I6L 56 
I6L H27 H27 H 0 1 N N N 46.855 4.324  114.870 -0.609 -6.210 2.248  H27 I6L 57 
I6L H28 H28 H 0 1 N N N 47.108 6.079  115.160 -0.597 -5.917 0.492  H28 I6L 58 
I6L H29 H29 H 0 1 N N N 51.581 6.094  117.643 -0.891 0.360  0.323  H29 I6L 59 
I6L H30 H30 H 0 1 N N N 54.823 9.157  116.405 0.988  1.369  0.601  H30 I6L 60 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
I6L C24 C25 SING N N 1  
I6L C24 C23 SING N N 2  
I6L C23 C22 SING N N 3  
I6L O26 C12 DOUB N N 4  
I6L N9  C5  SING Y N 5  
I6L N9  C8  DOUB Y N 6  
I6L C4  C5  SING Y N 7  
I6L C4  C3  DOUB Y N 8  
I6L C10 C22 SING N N 9  
I6L C10 C8  SING N N 10 
I6L C10 N11 SING N N 11 
I6L C5  C6  DOUB Y N 12 
I6L C29 C19 SING N N 13 
I6L C12 N11 SING N N 14 
I6L C12 C13 SING N N 15 
I6L C8  N7  SING Y N 16 
I6L N17 C13 SING Y N 17 
I6L N17 C16 SING Y N 18 
I6L C13 C14 DOUB Y N 19 
I6L C3  C2  SING Y N 20 
I6L C18 C16 SING N N 21 
I6L C18 C19 SING N N 22 
I6L C16 C15 DOUB Y N 23 
I6L C19 C30 SING N N 24 
I6L C19 C20 SING N N 25 
I6L C6  N7  SING Y N 26 
I6L C6  C1  SING Y N 27 
I6L C14 C15 SING Y N 28 
I6L C14 C27 SING N N 29 
I6L C15 C21 SING N N 30 
I6L C2  C1  DOUB Y N 31 
I6L C20 C21 SING N N 32 
I6L C21 O28 DOUB N N 33 
I6L C24 H1  SING N N 34 
I6L C24 H2  SING N N 35 
I6L C27 H3  SING N N 36 
I6L C27 H4  SING N N 37 
I6L C27 H5  SING N N 38 
I6L C29 H6  SING N N 39 
I6L C29 H7  SING N N 40 
I6L C29 H8  SING N N 41 
I6L C30 H9  SING N N 42 
I6L C30 H10 SING N N 43 
I6L C30 H11 SING N N 44 
I6L C20 H12 SING N N 45 
I6L C20 H13 SING N N 46 
I6L C22 H14 SING N N 47 
I6L C22 H15 SING N N 48 
I6L C18 H16 SING N N 49 
I6L C18 H17 SING N N 50 
I6L C10 H18 SING N N 51 
I6L N7  H19 SING N N 52 
I6L C3  H20 SING N N 53 
I6L C4  H21 SING N N 54 
I6L C1  H22 SING N N 55 
I6L C2  H23 SING N N 56 
I6L C23 H24 SING N N 57 
I6L C23 H25 SING N N 58 
I6L C25 H26 SING N N 59 
I6L C25 H27 SING N N 60 
I6L C25 H28 SING N N 61 
I6L N11 H29 SING N N 62 
I6L N17 H30 SING N N 63 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
I6L InChI            InChI                1.03  "InChI=1S/C24H30N4O2/c1-5-6-9-17(22-26-15-10-7-8-11-16(15)27-22)28-23(30)21-14(2)20-18(25-21)12-24(3,4)13-19(20)29/h7-8,10-11,17,25H,5-6,9,12-13H2,1-4H3,(H,26,27)(H,28,30)/t17-/m0/s1" 
I6L InChIKey         InChI                1.03  MLILCMJFXVXZFP-KRWDZBQOSA-N                                                                                                                                                             
I6L SMILES_CANONICAL CACTVS               3.385 "CCCC[C@H](NC(=O)c1[nH]c2CC(C)(C)CC(=O)c2c1C)c3[nH]c4ccccc4n3"                                                                                                                          
I6L SMILES           CACTVS               3.385 "CCCC[CH](NC(=O)c1[nH]c2CC(C)(C)CC(=O)c2c1C)c3[nH]c4ccccc4n3"                                                                                                                           
I6L SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCC[C@@H](c1[nH]c2ccccc2n1)NC(=O)c3c(c4c([nH]3)CC(CC4=O)(C)C)C"                                                                                                                       
I6L SMILES           "OpenEye OEToolkits" 2.0.7 "CCCCC(c1[nH]c2ccccc2n1)NC(=O)c3c(c4c([nH]3)CC(CC4=O)(C)C)C"                                                                                                                            
# 
_pdbx_chem_comp_identifier.comp_id           I6L 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "~{N}-[(1~{S})-1-(1~{H}-benzimidazol-2-yl)pentyl]-3,6,6-trimethyl-4-oxidanylidene-5,7-dihydro-1~{H}-indole-2-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
I6L "Create component" 2022-06-10 PDBJ 
I6L "Initial release"  2023-03-29 RCSB 
# 
