data_HJL
#

_chem_comp.id                                   HJL
_chem_comp.name                                 "[(2~{R},3~{S},4~{S})-5-[[2,5-bis(azanyl)-6-oxidanylidene-1~{H}-pyrimidin-4-yl]amino]-2,3,4-tris(oxidanyl)pentyl] dihydrogen phosphate"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C9 H18 N5 O8 P"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-01-14
_chem_comp.pdbx_modified_date                   2021-07-09
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       355.242
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    HJL
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7DS1
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
HJL  C2     C1   C  0  1  N  N  N   -9.966  25.240  -5.390  -5.367  -1.681  -0.280  C2     HJL   1  
HJL  C4     C2   C  0  1  N  N  N   -9.299  23.102  -4.805  -6.306   0.387   0.157  C4     HJL   2  
HJL  C5     C3   C  0  1  N  N  N  -10.647  22.682  -4.822  -5.021   0.963   0.260  C5     HJL   3  
HJL  C6     C4   C  0  1  N  N  N  -11.624  23.604  -5.116  -3.926   0.163   0.084  C6     HJL   4  
HJL  N1     N1   N  0  1  N  N  N  -11.239  24.897  -5.392  -4.111  -1.169  -0.189  N1     HJL   5  
HJL  N2     N2   N  0  1  N  N  N   -9.603  26.630  -5.691  -5.531  -3.016  -0.546  N2     HJL   6  
HJL  N3     N3   N  0  1  N  N  N   -8.981  24.369  -5.085  -6.428  -0.922  -0.111  N3     HJL   7  
HJL  N5     N4   N  0  1  N  N  N  -10.998  21.341  -4.538  -4.870   2.337   0.541  N5     HJL   8  
HJL  O4     O1   O  0  1  N  N  N   -8.403  22.301  -4.535  -7.304   1.079   0.311  O4     HJL   9  
HJL  "C1'"  C5   C  0  1  N  N  N  -14.076  24.179  -4.662  -1.487  -0.177  -0.015  "C1'"  HJL  10  
HJL  "C2'"  C6   C  0  1  N  N  S  -15.464  23.519  -4.546  -0.207   0.648   0.139  "C2'"  HJL  11  
HJL  "C3'"  C7   C  0  1  N  N  S  -15.420  22.382  -3.492   1.010  -0.257  -0.060  "C3'"  HJL  12  
HJL  "C4'"  C8   C  0  1  N  N  R  -16.897  21.957  -3.175   2.289   0.569   0.094  "C4'"  HJL  13  
HJL  "C5'"  C9   C  0  1  N  N  N  -16.939  20.616  -2.394   3.507  -0.336  -0.106  "C5'"  HJL  14  
HJL  "N1'"  N5   N  0  1  N  N  N  -13.048  23.206  -5.128  -2.652   0.689   0.176  "N1'"  HJL  15  
HJL  O1P    O2   O  0  1  N  N  N  -14.058  20.137  -1.679   6.351  -0.823  -1.307  O1P    HJL  16  
HJL  "O2'"  O3   O  0  1  N  N  N  -16.408  24.463  -4.156  -0.192   1.690  -0.838  "O2'"  HJL  17  
HJL  O2P    O4   O  0  1  N  N  N  -14.685  20.485   0.796   6.350  -1.377   1.156  O2P    HJL  18  
HJL  "O3'"  O5   O  0  1  N  N  N  -14.684  21.317  -4.031   0.995  -1.299   0.917  "O3'"  HJL  19  
HJL  O3P    O6   O  0  1  N  N  N  -15.455  18.584  -0.743   7.276   0.918   0.268  O3P    HJL  20  
HJL  "O4'"  O7   O  0  1  N  N  N  -17.524  22.911  -2.404   2.305   1.611  -0.884  "O4'"  HJL  21  
HJL  "O5'"  O8   O  0  1  N  N  N  -16.346  20.879  -1.116   4.700   0.407   0.152  "O5'"  HJL  22  
HJL  PAN    P1   P  0  1  N  N  N  -15.090  19.996  -0.696   6.173  -0.232   0.038  PAN    HJL  23  
HJL  H1     H1   H  0  1  N  N  N   -8.644  26.913  -5.667  -6.423  -3.392  -0.609  H1     HJL  24  
HJL  H2     H2   H  0  1  N  N  N  -10.315  27.294  -5.920  -4.755  -3.585  -0.672  H2     HJL  25  
HJL  H4     H4   H  0  1  N  N  N  -10.171  20.813  -4.348  -5.653   2.896   0.665  H4     HJL  26  
HJL  H5     H5   H  0  1  N  N  N  -11.600  21.316  -3.740  -3.983   2.724   0.610  H5     HJL  27  
HJL  H6     H6   H  0  1  N  N  N  -13.781  24.567  -3.676  -1.519  -0.614  -1.013  H6     HJL  28  
HJL  H7     H7   H  0  1  N  N  N  -14.134  25.010  -5.380  -1.498  -0.972   0.731  H7     HJL  29  
HJL  H8     H8   H  0  1  N  N  N  -15.729  23.082  -5.520  -0.175   1.085   1.137  H8     HJL  30  
HJL  H9     H9   H  0  1  N  N  N  -14.954  22.762  -2.571   0.978  -0.694  -1.058  H9     HJL  31  
HJL  H10    H10  H  0  1  N  N  N  -17.426  21.818  -4.130   2.322   1.006   1.092  H10    HJL  32  
HJL  H11    H11  H  0  1  N  N  N  -17.979  20.279  -2.270   3.449  -1.180   0.581  H11    HJL  33  
HJL  H12    H12  H  0  1  N  N  N  -16.365  19.845  -2.929   3.523  -0.703  -1.132  H12    HJL  34  
HJL  H13    H13  H  0  1  N  N  N  -13.277  22.967  -6.072  -2.530   1.632   0.368  H13    HJL  35  
HJL  H14    H14  H  0  1  N  N  N  -17.260  24.049  -4.087  -0.219   1.373  -1.751  H14    HJL  36  
HJL  H15    H15  H  0  1  N  N  N  -13.790  20.804   0.793   6.247  -1.060   2.063  H15    HJL  37  
HJL  H16    H16  H  0  1  N  N  N  -14.365  20.764  -3.328   1.022  -0.982   1.830  H16    HJL  38  
HJL  H17    H17  H  0  1  N  N  N  -14.926  18.141  -1.396   8.189   0.604   0.213  H17    HJL  39  
HJL  H18    H18  H  0  1  N  N  N  -18.415  22.637  -2.223   2.278   1.294  -1.797  H18    HJL  40  
HJL  H3     H3   H  0  1  N  N  N  -11.935  25.585  -5.597  -3.343  -1.747  -0.317  H3     HJL  41  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
HJL  N2     C2     SING  N  N   1  
HJL  N1     C2     SING  N  N   2  
HJL  N1     C6     SING  N  N   3  
HJL  C2     N3     DOUB  N  N   4  
HJL  "N1'"  C6     SING  N  N   5  
HJL  "N1'"  "C1'"  SING  N  N   6  
HJL  C6     C5     DOUB  N  N   7  
HJL  N3     C4     SING  N  N   8  
HJL  C5     C4     SING  N  N   9  
HJL  C5     N5     SING  N  N  10  
HJL  C4     O4     DOUB  N  N  11  
HJL  "C1'"  "C2'"  SING  N  N  12  
HJL  "C2'"  "O2'"  SING  N  N  13  
HJL  "C2'"  "C3'"  SING  N  N  14  
HJL  "O3'"  "C3'"  SING  N  N  15  
HJL  "C3'"  "C4'"  SING  N  N  16  
HJL  "C4'"  "O4'"  SING  N  N  17  
HJL  "C4'"  "C5'"  SING  N  N  18  
HJL  "C5'"  "O5'"  SING  N  N  19  
HJL  O1P    PAN    DOUB  N  N  20  
HJL  "O5'"  PAN    SING  N  N  21  
HJL  O3P    PAN    SING  N  N  22  
HJL  PAN    O2P    SING  N  N  23  
HJL  N2     H1     SING  N  N  24  
HJL  N2     H2     SING  N  N  25  
HJL  N5     H4     SING  N  N  26  
HJL  N5     H5     SING  N  N  27  
HJL  "C1'"  H6     SING  N  N  28  
HJL  "C1'"  H7     SING  N  N  29  
HJL  "C2'"  H8     SING  N  N  30  
HJL  "C3'"  H9     SING  N  N  31  
HJL  "C4'"  H10    SING  N  N  32  
HJL  "C5'"  H11    SING  N  N  33  
HJL  "C5'"  H12    SING  N  N  34  
HJL  "N1'"  H13    SING  N  N  35  
HJL  "O2'"  H14    SING  N  N  36  
HJL  O2P    H15    SING  N  N  37  
HJL  "O3'"  H16    SING  N  N  38  
HJL  O3P    H17    SING  N  N  39  
HJL  "O4'"  H18    SING  N  N  40  
HJL  N1     H3     SING  N  N  41  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
HJL  InChI             InChI                 1.03   "InChI=1S/C9H18N5O8P/c10-5-7(13-9(11)14-8(5)18)12-1-3(15)6(17)4(16)2-22-23(19,20)21/h3-4,6,15-17H,1-2,10H2,(H2,19,20,21)(H4,11,12,13,14,18)/t3-,4+,6-/m0/s1"  
HJL  InChIKey          InChI                 1.03   ACIVVGBVOVHFPQ-RPDRRWSUSA-N  
HJL  SMILES_CANONICAL  CACTVS                3.385  "NC1=NC(=O)C(=C(NC[C@H](O)[C@H](O)[C@H](O)CO[P](O)(O)=O)N1)N"  
HJL  SMILES            CACTVS                3.385  "NC1=NC(=O)C(=C(NC[CH](O)[CH](O)[CH](O)CO[P](O)(O)=O)N1)N"  
HJL  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "C([C@@H]([C@@H]([C@@H](COP(=O)(O)O)O)O)O)NC1=C(C(=O)N=C(N1)N)N"  
HJL  SMILES            "OpenEye OEToolkits"  2.0.7  "C(C(C(C(COP(=O)(O)O)O)O)O)NC1=C(C(=O)N=C(N1)N)N"  
#
_pdbx_chem_comp_identifier.comp_id          HJL
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "[(2~{R},3~{S},4~{S})-5-[[2,5-bis(azanyl)-4-oxidanylidene-1~{H}-pyrimidin-6-yl]amino]-2,3,4-tris(oxidanyl)pentyl] dihydrogen phosphate"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
HJL  "Create component"  2021-01-14  PDBJ  
HJL  "Initial release"   2021-07-14  RCSB  
##
