data_H6L
# 
_chem_comp.id                                    H6L 
_chem_comp.name                                  "~{N}-[(2~{S})-3-methyl-1-[[(2~{S})-4-methyl-1-oxidanylidene-1-[[(2~{S})-1-oxidanylidene-3-[(3~{S})-2-oxidanylidenepiperidin-3-yl]propan-2-yl]amino]pentan-2-yl]amino]-1-oxidanylidene-butan-2-yl]-4-nitro-benzamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C26 H37 N5 O7" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2020-11-19 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        531.601 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     H6L 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7DGI 
_chem_comp.pdbx_subcomponent_list                "4NB VAL LEU ELF" 
_chem_comp.pdbx_processing_site                  PDBJ 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
H6L C26 C9  C 0  1 N N N N N N -7.642  16.648 39.782 4.247  -0.658 1.153  C     4NB 1  
H6L O36 O5  O 0  1 N N N N N N -7.792  17.271 40.781 4.360  -1.333 2.158  O2    4NB 2  
H6L C27 C22 C 0  1 Y N N N N N -6.334  16.893 38.935 5.453  -0.140 0.472  C1    4NB 3  
H6L C28 C10 C 0  1 Y N N N N N -5.378  15.963 38.462 6.721  -0.426 0.979  C2    4NB 4  
H6L C29 C23 C 0  1 Y N N N N N -4.281  16.462 37.702 7.842  0.060  0.337  C3    4NB 5  
H6L C30 C24 C 0  1 Y N N N N N -4.171  17.841 37.417 7.711  0.828  -0.806 C4    4NB 6  
H6L C34 C25 C 0  1 Y N N N N N -5.139  18.734 37.891 6.456  1.115  -1.313 C5    4NB 7  
H6L C35 C26 C 0  1 Y N N N N N -6.206  18.250 38.637 5.327  0.631  -0.685 C6    4NB 8  
H6L N31 N5  N 1  1 N N N N N N -3.093  18.476 36.644 8.917  1.346  -1.489 N     4NB 9  
H6L O32 O3  O -1 1 N N N N N N -2.184  17.730 35.869 8.805  2.023  -2.495 "O1'" 4NB 10 
H6L O33 O4  O 0  1 N N N N N N -2.995  19.655 36.675 10.023 1.096  -1.044 "O2'" 4NB 11 
H6L N25 N4  N 0  1 N N N N N N -8.755  15.774 39.362 3.024  -0.386 0.658  N     VAL 12 
H6L C21 C6  C 0  1 N N S N N N -9.877  15.819 40.285 1.829  -0.904 1.331  CA    VAL 13 
H6L C20 C5  C 0  1 N N N N N N -10.289 14.481 40.846 0.702  -1.014 0.337  C     VAL 14 
H6L O37 O6  O 0  1 N N N N N N -10.532 13.562 40.137 0.878  -0.692 -0.819 O     VAL 15 
H6L C22 C7  C 0  1 N N N N N N -11.101 16.436 39.541 1.425  0.049  2.457  CB    VAL 16 
H6L C24 C8  C 0  1 N N N N N N -10.702 17.581 38.571 2.569  0.162  3.466  CG1   VAL 17 
H6L C23 C21 C 0  1 N N N N N N -12.216 16.885 40.512 1.122  1.431  1.873  CG2   VAL 18 
H6L N19 N3  N 0  1 N N N N N N -10.396 14.418 42.316 -0.503 -1.471 0.733  N     LEU 19 
H6L C14 C18 C 0  1 N N S N N N -10.805 13.224 43.000 -1.629 -1.475 -0.205 CA    LEU 20 
H6L C13 C2  C 0  1 N N N N N N -12.316 13.129 42.742 -2.920 -1.336 0.560  C     LEU 21 
H6L O38 O7  O 0  1 N N N N N N -13.042 14.043 42.953 -2.954 -1.595 1.745  O     LEU 22 
H6L C15 C3  C 0  1 N N N N N N -10.509 13.406 44.491 -1.638 -2.791 -0.985 CB    LEU 23 
H6L C16 C19 C 0  1 N N N N N N -8.947  13.498 44.772 -2.727 -2.740 -2.059 CG    LEU 24 
H6L C17 C4  C 0  1 N N N N N N -8.186  12.316 44.127 -2.354 -1.696 -3.113 CD1   LEU 25 
H6L C18 C20 C 0  1 N N N N N N -8.650  13.589 46.271 -2.853 -4.112 -2.723 CD2   LEU 26 
H6L C07 C16 C 0  1 N N N N N N -14.365 14.640 38.518 -4.900 3.724  0.943  C6    ELF 27 
H6L C03 C12 C 0  1 N N S N N N -14.287 11.782 41.947 -5.264 -0.687 0.691  C11   ELF 28 
H6L C06 C15 C 0  1 N N N N N N -14.565 13.737 39.645 -5.330 2.264  1.137  C13   ELF 29 
H6L C10 C1  C 0  1 N N N N N N -14.100 11.843 37.988 -6.323 2.504  -1.126 C15   ELF 30 
H6L C04 C13 C 0  1 N N N N N N -14.510 11.412 40.478 -6.176 0.261  -0.092 C17   ELF 31 
H6L C02 C11 C 0  1 N N N N N N -14.818 10.712 42.860 -5.976 -1.996 0.917  C24   ELF 32 
H6L C05 C14 C 0  1 N N S N N N -13.925 12.470 39.440 -5.490 1.620  -0.243 C25   ELF 33 
H6L C08 C17 C 0  1 N N N N N N -15.091 14.145 37.322 -6.056 4.495  0.306  C27   ELF 34 
H6L N12 N1  N 0  1 N N N N N N -12.846 11.885 42.197 -4.036 -0.923 -0.072 N3    ELF 35 
H6L N09 N2  N 0  1 N N N N N N -14.707 12.726 36.896 -6.548 3.794  -0.874 N4    ELF 36 
H6L O01 O1  O 0  1 N N N N N N -15.988 10.540 42.868 -5.505 -3.021 0.485  O3    ELF 37 
H6L O11 O2  O 0  1 N N N N N N -13.769 10.732 37.760 -6.817 2.019  -2.121 O4    ELF 38 
H6L H12 H12 H 0  1 N N N N N N -5.477  14.908 38.671 6.826  -1.025 1.871  H2    4NB 39 
H6L H32 H32 H 0  1 N N N N N N -3.526  15.779 37.340 8.825  -0.159 0.729  H3    4NB 40 
H6L H33 H33 H 0  1 N N N N N N -5.057  19.790 37.679 6.360  1.716  -2.206 H5    4NB 41 
H6L H34 H34 H 0  1 N N N N N N -6.955  18.941 38.995 4.348  0.855  -1.082 H6    4NB 42 
H6L H37 H37 H 0  1 N N N N N N -8.739  15.213 38.534 2.934  0.153  -0.143 H     VAL 43 
H6L H7  H7  H 0  1 N N N N N N -9.625  16.484 41.124 2.045  -1.888 1.747  HA    VAL 44 
H6L H8  H8  H 0  1 N N N N N N -11.527 15.633 38.921 0.536  -0.336 2.957  HB    VAL 45 
H6L H9  H9  H 0  1 N N N N N N -11.603 17.975 38.078 2.281  0.840  4.269  HG11  VAL 46 
H6L H10 H10 H 0  1 N N N N N N -10.212 18.387 39.137 2.785  -0.822 3.882  HG12  VAL 47 
H6L H11 H11 H 0  1 N N N N N N -10.008 17.192 37.811 3.458  0.547  2.966  HG13  VAL 48 
H6L H29 H29 H 0  1 N N N N N N -12.475 16.053 41.184 0.307  1.351  1.154  HG21  VAL 49 
H6L H30 H30 H 0  1 N N N N N N -11.862 17.740 41.107 0.834  2.109  2.675  HG22  VAL 50 
H6L H31 H31 H 0  1 N N N N N N -13.105 17.182 39.937 2.011  1.816  1.373  HG23  VAL 51 
H6L H36 H36 H 0  1 N N N N N N -10.177 15.233 42.853 -0.624 -1.797 1.638  H2    LEU 52 
H6L H24 H24 H 0  1 N N N N N N -10.292 12.332 42.611 -1.526 -0.641 -0.899 HA    LEU 53 
H6L H2  H2  H 0  1 N N N N N N -10.989 14.332 44.840 -0.667 -2.940 -1.459 HB2   LEU 54 
H6L H3  H3  H 0  1 N N N N N N -10.921 12.549 45.044 -1.839 -3.617 -0.303 HB3   LEU 55 
H6L H25 H25 H 0  1 N N N N N N -8.586  14.424 44.300 -3.677 -2.469 -1.599 HG    LEU 56 
H6L H4  H4  H 0  1 N N N N N N -7.111  12.411 44.341 -1.441 -2.003 -3.623 HD11  LEU 57 
H6L H5  H5  H 0  1 N N N N N N -8.560  11.369 44.543 -3.163 -1.607 -3.839 HD12  LEU 58 
H6L H6  H6  H 0  1 N N N N N N -8.346  12.327 43.039 -2.193 -0.732 -2.629 HD13  LEU 59 
H6L H26 H26 H 0  1 N N N N N N -9.202  14.436 46.704 -3.118 -4.856 -1.972 HD21  LEU 60 
H6L H27 H27 H 0  1 N N N N N N -8.963  12.657 46.764 -3.629 -4.076 -3.488 HD22  LEU 61 
H6L H28 H28 H 0  1 N N N N N N -7.571  13.739 46.422 -1.902 -4.383 -3.182 HD23  LEU 62 
H6L H20 H20 H 0  1 N N N N N N -13.291 14.702 38.290 -4.655 4.164  1.909  H1    ELF 63 
H6L H21 H21 H 0  1 N N N N N N -14.742 15.639 38.783 -4.027 3.764  0.291  H2    ELF 64 
H6L H14 H14 H 0  1 N N N N N N -14.783 12.739 42.164 -5.014 -0.238 1.653  H3    ELF 65 
H6L H18 H18 H 0  1 N N N N N N -14.149 14.202 40.551 -4.568 1.730  1.705  H4    ELF 66 
H6L H19 H19 H 0  1 N N N N N N -15.644 13.572 39.780 -6.279 2.229  1.671  H5    ELF 67 
H6L H15 H15 H 0  1 N N N N N N -15.593 11.323 40.306 -6.374 -0.158 -1.079 H6    ELF 68 
H6L H16 H16 H 0  1 N N N N N N -14.027 10.442 40.290 -7.116 0.386  0.445  H7    ELF 69 
H6L H13 H13 H 0  1 N N N N N N -14.159 10.125 43.482 -6.906 -2.017 1.464  H8    ELF 70 
H6L H17 H17 H 0  1 N N N N N N -12.846 12.565 39.634 -4.508 1.480  -0.693 H9    ELF 71 
H6L H22 H22 H 0  1 N N N N N N -14.879 14.826 36.484 -6.866 4.593  1.030  H10   ELF 72 
H6L H23 H23 H 0  1 N N N N N N -16.169 14.159 37.543 -5.711 5.486  0.015  H11   ELF 73 
H6L H1  H1  H 0  1 N N N N N N -12.238 11.116 41.997 -4.027 -0.783 -1.031 H12   ELF 74 
H6L H35 H35 H 0  1 N N N N N N -14.844 12.396 35.962 -7.072 4.298  -1.516 H15   ELF 75 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
H6L O32 N31 SING N N 1  
H6L N31 O33 DOUB N N 2  
H6L N31 C30 SING N N 3  
H6L N09 C08 SING N N 4  
H6L N09 C10 SING N N 5  
H6L C08 C07 SING N N 6  
H6L C30 C29 DOUB Y N 7  
H6L C30 C34 SING Y N 8  
H6L C29 C28 SING Y N 9  
H6L O11 C10 DOUB N N 10 
H6L C34 C35 DOUB Y N 11 
H6L C10 C05 SING N N 12 
H6L C28 C27 DOUB Y N 13 
H6L C07 C06 SING N N 14 
H6L C24 C22 SING N N 15 
H6L C35 C27 SING Y N 16 
H6L C27 C26 SING N N 17 
H6L N25 C26 SING N N 18 
H6L N25 C21 SING N N 19 
H6L C05 C06 SING N N 20 
H6L C05 C04 SING N N 21 
H6L C22 C21 SING N N 22 
H6L C22 C23 SING N N 23 
H6L C26 O36 DOUB N N 24 
H6L O37 C20 DOUB N N 25 
H6L C21 C20 SING N N 26 
H6L C04 C03 SING N N 27 
H6L C20 N19 SING N N 28 
H6L C03 N12 SING N N 29 
H6L C03 C02 SING N N 30 
H6L N12 C13 SING N N 31 
H6L N19 C14 SING N N 32 
H6L C13 O38 DOUB N N 33 
H6L C13 C14 SING N N 34 
H6L C02 O01 DOUB N N 35 
H6L C14 C15 SING N N 36 
H6L C17 C16 SING N N 37 
H6L C15 C16 SING N N 38 
H6L C16 C18 SING N N 39 
H6L N12 H1  SING N N 40 
H6L C15 H2  SING N N 41 
H6L C15 H3  SING N N 42 
H6L C17 H4  SING N N 43 
H6L C17 H5  SING N N 44 
H6L C17 H6  SING N N 45 
H6L C21 H7  SING N N 46 
H6L C22 H8  SING N N 47 
H6L C24 H9  SING N N 48 
H6L C24 H10 SING N N 49 
H6L C24 H11 SING N N 50 
H6L C28 H12 SING N N 51 
H6L C02 H13 SING N N 52 
H6L C03 H14 SING N N 53 
H6L C04 H15 SING N N 54 
H6L C04 H16 SING N N 55 
H6L C05 H17 SING N N 56 
H6L C06 H18 SING N N 57 
H6L C06 H19 SING N N 58 
H6L C07 H20 SING N N 59 
H6L C07 H21 SING N N 60 
H6L C08 H22 SING N N 61 
H6L C08 H23 SING N N 62 
H6L C14 H24 SING N N 63 
H6L C16 H25 SING N N 64 
H6L C18 H26 SING N N 65 
H6L C18 H27 SING N N 66 
H6L C18 H28 SING N N 67 
H6L C23 H29 SING N N 68 
H6L C23 H30 SING N N 69 
H6L C23 H31 SING N N 70 
H6L C29 H32 SING N N 71 
H6L C34 H33 SING N N 72 
H6L C35 H34 SING N N 73 
H6L N09 H35 SING N N 74 
H6L N19 H36 SING N N 75 
H6L N25 H37 SING N N 76 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
H6L InChI            InChI                1.03  "InChI=1S/C26H37N5O7/c1-15(2)12-21(25(35)28-19(14-32)13-18-6-5-11-27-23(18)33)29-26(36)22(16(3)4)30-24(34)17-7-9-20(10-8-17)31(37)38/h7-10,14-16,18-19,21-22H,5-6,11-13H2,1-4H3,(H,27,33)(H,28,35)(H,29,36)(H,30,34)/t18-,19-,21-,22-/m0/s1" 
H6L InChIKey         InChI                1.03  UUOJCIYWLMPKQE-LGGPRVQUSA-N                                                                                                                                                                                                                  
H6L SMILES_CANONICAL CACTVS               3.385 "CC(C)C[C@H](NC(=O)[C@@H](NC(=O)c1ccc(cc1)[N+]([O-])=O)C(C)C)C(=O)N[C@@H](C[C@@H]2CCCNC2=O)C=O"                                                                                                                                              
H6L SMILES           CACTVS               3.385 "CC(C)C[CH](NC(=O)[CH](NC(=O)c1ccc(cc1)[N+]([O-])=O)C(C)C)C(=O)N[CH](C[CH]2CCCNC2=O)C=O"                                                                                                                                                     
H6L SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCCNC1=O)C=O)NC(=O)[C@H](C(C)C)NC(=O)c2ccc(cc2)[N+](=O)[O-]"                                                                                                                                              
H6L SMILES           "OpenEye OEToolkits" 2.0.7 "CC(C)CC(C(=O)NC(CC1CCCNC1=O)C=O)NC(=O)C(C(C)C)NC(=O)c2ccc(cc2)[N+](=O)[O-]"                                                                                                                                                                 
# 
_pdbx_chem_comp_identifier.comp_id           H6L 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "~{N}-[(2~{S})-3-methyl-1-[[(2~{S})-4-methyl-1-oxidanylidene-1-[[(2~{S})-1-oxidanylidene-3-[(3~{S})-2-oxidanylidenepiperidin-3-yl]propan-2-yl]amino]pentan-2-yl]amino]-1-oxidanylidene-butan-2-yl]-4-nitro-benzamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
H6L "Create component" 2020-11-19 PDBJ 
H6L "Initial release"  2021-11-24 RCSB 
H6L "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            H6L 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C02 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
