data_E6L
#

_chem_comp.id                                   E6L
_chem_comp.name                                 
;4-[(3-chloranyl-4-methoxy-phenyl)methylamino]-2-[(2S)-2-(hydroxymethyl)pyrrolidin-1-yl]-N-(pyrimidin-2-ylmethyl)pyrimid
ine-5-carboxamide
;

_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C23 H26 Cl N7 O3"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        Avanafil
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-10-31
_chem_comp.pdbx_modified_date                   2020-08-28
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       483.951
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    E6L
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6L6E
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
E6L  C11  C1   C   0  1  Y  N  N   0.110  -28.871  -26.226   0.340  -0.881   0.198  C11  E6L   1  
E6L  C1   C2   C   0  1  N  N  N   0.306  -32.477  -32.805  -7.678   0.968   1.801  C1   E6L   2  
E6L  C3   C3   C   0  1  Y  N  N   0.147  -32.396  -30.449  -5.884   0.269   0.407  C3   E6L   3  
E6L  C4   C4   C   0  1  Y  N  N  -0.440  -32.781  -29.273  -5.267   0.131  -0.830  C4   E6L   4  
E6L  C5   C5   C   0  1  Y  N  N   0.063  -32.271  -28.007  -4.021  -0.460  -0.917  C5   E6L   5  
E6L  C6   C6   C   0  1  Y  N  N   1.112  -31.426  -27.994  -3.388  -0.912   0.226  C6   E6L   6  
E6L  C7   C7   C   0  1  Y  N  N   1.717  -31.034  -29.181  -4.000  -0.776   1.458  C7   E6L   7  
E6L  C8   C8   C   0  1  Y  N  N   1.227  -31.532  -30.436  -5.246  -0.186   1.551  C8   E6L   8  
E6L  C9   C9   C   0  1  N  N  N   1.657  -30.867  -26.595  -2.028  -1.555   0.129  C9   E6L   9  
E6L  C13  C10  C   0  1  Y  N  N  -2.042  -29.088  -25.445   1.976  -2.500   0.066  C13  E6L  10  
E6L  C15  C11  C   0  1  Y  N  N  -1.434  -26.956  -26.230   2.681  -0.306   0.138  C15  E6L  11  
E6L  C16  C12  C   0  1  Y  N  N  -0.171  -27.473  -26.509   1.347   0.109   0.205  C16  E6L  12  
E6L  C17  C13  C   0  1  N  N  N   0.860  -26.608  -27.090   1.002   1.538   0.281  C17  E6L  13  
E6L  C20  C14  C   0  1  N  N  N   1.599  -24.332  -27.948   1.625   3.893   0.246  C20  E6L  14  
E6L  C21  C15  C   0  1  Y  N  N   2.461  -23.496  -26.858   2.876   4.720   0.096  C21  E6L  15  
E6L  C23  C16  C   0  1  Y  N  N   3.882  -23.470  -25.032   4.348   5.823  -1.279  C23  E6L  16  
E6L  C24  C17  C   0  1  Y  N  N   3.909  -22.070  -25.070   5.095   6.189  -0.170  C24  E6L  17  
E6L  C25  C18  C   0  1  Y  N  N   3.177  -21.418  -26.048   4.661   5.779   1.081  C25  E6L  18  
E6L  C28  C19  C   0  1  N  N  N  -4.425  -29.385  -24.272   1.803  -4.575   1.181  C28  E6L  19  
E6L  C29  C20  C   0  1  N  N  N  -4.931  -30.438  -23.607   2.678  -5.853   1.202  C29  E6L  20  
E6L  C30  C21  C   0  1  N  N  N  -3.617  -31.224  -23.048   4.063  -5.332   0.755  C30  E6L  21  
E6L  C31  C22  C   0  1  N  N  S  -2.711  -31.172  -24.053   3.774  -4.022  -0.002  C31  E6L  22  
E6L  C32  C23  C   0  1  N  N  N  -2.836  -32.368  -25.055   4.295  -4.124  -1.437  C32  E6L  23  
E6L  N10  N1   N   0  1  N  N  N   1.458  -29.440  -26.528  -0.992  -0.528   0.256  N10  E6L  24  
E6L  N12  N2   N   0  1  Y  N  N  -0.857  -29.632  -25.692   0.698  -2.157   0.128  N12  E6L  25  
E6L  N14  N3   N   0  1  Y  N  N  -2.344  -27.764  -25.702   2.949  -1.597   0.071  N14  E6L  26  
E6L  N19  N4   N   0  1  N  N  N   0.563  -25.150  -27.351   1.968   2.471   0.171  N19  E6L  27  
E6L  N22  N5   N   0  1  Y  N  N   3.134  -24.129  -25.961   3.256   5.096  -1.109  N22  E6L  28  
E6L  N26  N6   N   0  1  Y  N  N   2.471  -22.137  -26.922   3.558   5.053   1.174  N26  E6L  29  
E6L  N27  N7   N   0  1  N  N  N  -3.067  -29.910  -24.862   2.306  -3.838  -0.006  N27  E6L  30  
E6L  O2   O1   O   0  1  N  N  N  -0.365  -32.920  -31.702  -7.107   0.854   0.496  O2   E6L  31  
E6L  O18  O2   O   0  1  N  N  N   1.927  -27.048  -27.345  -0.155   1.877   0.442  O18  E6L  32  
E6L  O33  O3   O   0  1  N  N  N  -2.338  -33.572  -24.429   3.758  -5.295  -2.056  O33  E6L  33  
E6L  CL1  CL1  CL  0  0  N  N  N  -1.809  -33.882  -29.303  -6.062   0.698  -2.265  CL1  E6L  34  
E6L  H1   H1   H   0  1  N  N  N  -0.141  -32.918  -33.708  -7.797  -0.025   2.234  H1   E6L  35  
E6L  H2   H2   H   0  1  N  N  N   0.238  -31.380  -32.860  -7.021   1.564   2.434  H2   E6L  36  
E6L  H3   H3   H   0  1  N  N  N   1.362  -32.776  -32.736  -8.652   1.452   1.730  H3   E6L  37  
E6L  H4   H4   H   0  1  N  N  N  -0.403  -32.569  -27.080  -3.541  -0.568  -1.878  H4   E6L  38  
E6L  H5   H5   H   0  1  N  N  N   2.556  -30.354  -29.160  -3.503  -1.130   2.349  H5   E6L  39  
E6L  H6   H6   H   0  1  N  N  N   1.698  -31.234  -31.361  -5.724  -0.080   2.514  H6   E6L  40  
E6L  H7   H7   H   0  1  N  N  N   1.112  -31.351  -25.771  -1.915  -2.287   0.928  H7   E6L  41  
E6L  H8   H8   H   0  1  N  N  N   2.730  -31.091  -26.506  -1.930  -2.053  -0.836  H8   E6L  42  
E6L  H9   H9   H   0  1  N  N  N  -1.667  -25.922  -26.439   3.481   0.420   0.141  H9   E6L  43  
E6L  H10  H10  H   0  1  N  N  N   2.283  -24.987  -28.507   1.163   4.105   1.211  H10  E6L  44  
E6L  H11  H11  H   0  1  N  N  N   1.126  -23.620  -28.641   0.928   4.142  -0.553  H11  E6L  45  
E6L  H12  H12  H   0  1  N  N  N   4.440  -24.014  -24.285   4.654   6.128  -2.269  H12  E6L  46  
E6L  H13  H13  H   0  1  N  N  N   4.489  -21.510  -24.351   5.991   6.782  -0.277  H13  E6L  47  
E6L  H14  H14  H   0  1  N  N  N   3.178  -20.339  -26.103   5.217   6.045   1.968  H14  E6L  48  
E6L  H15  H15  H   0  1  N  N  N  -4.252  -28.540  -23.589   0.750  -4.831   1.056  H15  E6L  49  
E6L  H16  H16  H   0  1  N  N  N  -5.104  -29.071  -25.078   1.950  -3.992   2.090  H16  E6L  50  
E6L  H17  H17  H   0  1  N  N  N  -5.570  -30.105  -22.776   2.728  -6.269   2.208  H17  E6L  51  
E6L  H18  H18  H   0  1  N  N  N  -5.514  -31.082  -24.282   2.298  -6.592   0.497  H18  E6L  52  
E6L  H19  H19  H   0  1  N  N  N  -3.866  -32.268  -22.809   4.691  -5.135   1.624  H19  E6L  53  
E6L  H20  H20  H   0  1  N  N  N  -3.224  -30.726  -22.150   4.544  -6.054   0.096  H20  E6L  54  
E6L  H21  H21  H   0  1  N  N  N  -1.675  -31.103  -23.689   4.252  -3.185   0.507  H21  E6L  55  
E6L  H22  H22  H   0  1  N  N  N  -2.246  -32.153  -25.958   3.987  -3.243  -1.999  H22  E6L  56  
E6L  H23  H23  H   0  1  N  N  N  -3.892  -32.507  -25.331   5.383  -4.186  -1.425  H23  E6L  57  
E6L  H24  H24  H   0  1  N  N  N   2.077  -29.098  -25.821  -1.242   0.401   0.382  H24  E6L  58  
E6L  H25  H25  H   0  1  N  N  N  -0.327  -24.759  -27.117   2.891   2.201   0.042  H25  E6L  59  
E6L  H26  H26  H   0  1  N  N  N  -2.413  -34.299  -25.036   4.046  -5.424  -2.970  H26  E6L  60  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
E6L  C1   O2   SING  N  N   1  
E6L  O2   C3   SING  N  N   2  
E6L  C3   C8   DOUB  Y  N   3  
E6L  C3   C4   SING  Y  N   4  
E6L  C8   C7   SING  Y  N   5  
E6L  CL1  C4   SING  N  N   6  
E6L  C4   C5   DOUB  Y  N   7  
E6L  C7   C6   DOUB  Y  N   8  
E6L  C5   C6   SING  Y  N   9  
E6L  C6   C9   SING  N  N  10  
E6L  C20  N19  SING  N  N  11  
E6L  C20  C21  SING  N  N  12  
E6L  N19  C17  SING  N  N  13  
E6L  O18  C17  DOUB  N  N  14  
E6L  C17  C16  SING  N  N  15  
E6L  N26  C21  DOUB  Y  N  16  
E6L  N26  C25  SING  Y  N  17  
E6L  C21  N22  SING  Y  N  18  
E6L  C9   N10  SING  N  N  19  
E6L  N10  C11  SING  N  N  20  
E6L  C16  C15  DOUB  Y  N  21  
E6L  C16  C11  SING  Y  N  22  
E6L  C15  N14  SING  Y  N  23  
E6L  C11  N12  DOUB  Y  N  24  
E6L  C25  C24  DOUB  Y  N  25  
E6L  N22  C23  DOUB  Y  N  26  
E6L  N14  C13  DOUB  Y  N  27  
E6L  N12  C13  SING  Y  N  28  
E6L  C13  N27  SING  N  N  29  
E6L  C24  C23  SING  Y  N  30  
E6L  C32  O33  SING  N  N  31  
E6L  C32  C31  SING  N  N  32  
E6L  N27  C28  SING  N  N  33  
E6L  N27  C31  SING  N  N  34  
E6L  C28  C29  SING  N  N  35  
E6L  C31  C30  SING  N  N  36  
E6L  C29  C30  SING  N  N  37  
E6L  C1   H1   SING  N  N  38  
E6L  C1   H2   SING  N  N  39  
E6L  C1   H3   SING  N  N  40  
E6L  C5   H4   SING  N  N  41  
E6L  C7   H5   SING  N  N  42  
E6L  C8   H6   SING  N  N  43  
E6L  C9   H7   SING  N  N  44  
E6L  C9   H8   SING  N  N  45  
E6L  C15  H9   SING  N  N  46  
E6L  C20  H10  SING  N  N  47  
E6L  C20  H11  SING  N  N  48  
E6L  C23  H12  SING  N  N  49  
E6L  C24  H13  SING  N  N  50  
E6L  C25  H14  SING  N  N  51  
E6L  C28  H15  SING  N  N  52  
E6L  C28  H16  SING  N  N  53  
E6L  C29  H17  SING  N  N  54  
E6L  C29  H18  SING  N  N  55  
E6L  C30  H19  SING  N  N  56  
E6L  C30  H20  SING  N  N  57  
E6L  C31  H21  SING  N  N  58  
E6L  C32  H22  SING  N  N  59  
E6L  C32  H23  SING  N  N  60  
E6L  N10  H24  SING  N  N  61  
E6L  N19  H25  SING  N  N  62  
E6L  O33  H26  SING  N  N  63  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
E6L  InChI             InChI                 1.03   "InChI=1S/C23H26ClN7O3/c1-34-19-6-5-15(10-18(19)24)11-27-21-17(22(33)28-13-20-25-7-3-8-26-20)12-29-23(30-21)31-9-2-4-16(31)14-32/h3,5-8,10,12,16,32H,2,4,9,11,13-14H2,1H3,(H,28,33)(H,27,29,30)/t16-/m0/s1"  
E6L  InChIKey          InChI                 1.03   WEAJZXNPAWBCOA-INIZCTEOSA-N  
E6L  SMILES_CANONICAL  CACTVS                3.385  "COc1ccc(CNc2nc(ncc2C(=O)NCc3ncccn3)N4CCC[C@H]4CO)cc1Cl"  
E6L  SMILES            CACTVS                3.385  "COc1ccc(CNc2nc(ncc2C(=O)NCc3ncccn3)N4CCC[CH]4CO)cc1Cl"  
E6L  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "COc1ccc(cc1Cl)CNc2c(cnc(n2)N3CCC[C@H]3CO)C(=O)NCc4ncccn4"  
E6L  SMILES            "OpenEye OEToolkits"  2.0.7  "COc1ccc(cc1Cl)CNc2c(cnc(n2)N3CCCC3CO)C(=O)NCc4ncccn4"  
#
_pdbx_chem_comp_identifier.comp_id          E6L
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "4-[(3-chloranyl-4-methoxy-phenyl)methylamino]-2-[(2~{S})-2-(hydroxymethyl)pyrrolidin-1-yl]-~{N}-(pyrimidin-2-ylmethyl)pyrimidine-5-carboxamide"
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     E6L
_pdbx_chem_comp_synonyms.name        Avanafil
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
E6L  "Create component"  2019-10-31  PDBJ  
E6L  "Modify synonyms"   2020-06-05  PDBE  
E6L  "Initial release"   2020-09-02  RCSB  
##
