data_DXL
#

_chem_comp.id                                   DXL
_chem_comp.name                                 "D-xylaric acid"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C5 H8 O7"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        m-Xylarate
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2010-09-27
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       180.113
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    DXL
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3OZM
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
DXL  OAA   OAA   O  0  1  N  N  N  -8.427  25.222  47.237  -2.744  -1.510   0.091  OAA   DXL   1  
DXL  OAB   OAB   O  0  1  N  N  N  -6.110  25.643  48.616  -1.249   1.816   0.281  OAB   DXL   2  
DXL  OAC   OAC   O  0  1  N  N  N  -4.935  22.943  45.403   1.249   1.816   0.281  OAC   DXL   3  
DXL  OAD   OAD   O  0  1  N  N  N  -5.065  26.116  43.734   2.744  -1.510   0.091  OAD   DXL   4  
DXL  OAE   OAE   O  0  1  N  N  N  -7.756  23.143  46.794  -3.228   0.472  -0.756  OAE   DXL   5  
DXL  CAF   CAF   C  0  1  N  N  N  -7.564  24.324  47.168  -2.480  -0.207  -0.095  CAF   DXL   6  
DXL  CAG   CAG   C  0  1  N  N  R  -6.124  24.662  47.565  -1.249   0.407   0.521  CAG   DXL   7  
DXL  CAH   CAH   C  0  1  N  N  N  -5.346  25.207  46.352  -0.000  -0.217  -0.104  CAH   DXL   8  
DXL  CAI   CAI   C  0  1  N  N  S  -5.486  24.248  45.154   1.249   0.407   0.521  CAI   DXL   9  
DXL  CAJ   CAJ   C  0  1  N  N  N  -4.969  24.879  43.843   2.480  -0.207  -0.095  CAJ   DXL  10  
DXL  OAK   OAK   O  0  1  N  N  N  -4.511  24.112  42.974   3.228   0.472  -0.756  OAK   DXL  11  
DXL  OAL   OAL   O  0  1  N  N  N  -3.980  25.373  46.757  -0.000  -1.626   0.136  OAL   DXL  12  
DXL  HOAA  HOAA  H  0  0  N  N  N  -9.267  24.876  46.960  -3.545  -1.859  -0.323  HOAA  DXL  13  
DXL  HOAB  HOAB  H  0  0  N  N  N  -5.212  25.843  48.852  -1.249   2.055  -0.656  HOAB  DXL  14  
DXL  HOAC  HOAC  H  0  0  N  N  N  -4.465  22.645  44.633   1.249   2.055  -0.656  HOAC  DXL  15  
DXL  HOAD  HOAD  H  0  0  N  N  N  -4.735  26.386  42.885   3.545  -1.859  -0.323  HOAD  DXL  16  
DXL  HAG   HAG   H  0  1  N  N  N  -5.643  23.740  47.922  -1.249   0.222   1.595  HAG   DXL  17  
DXL  HAH   HAH   H  0  1  N  N  N  -5.748  26.177  46.023  -0.000  -0.032  -1.178  HAH   DXL  18  
DXL  HAI   HAI   H  0  1  N  N  N  -6.565  24.083  45.019   1.249   0.222   1.595  HAI   DXL  19  
DXL  HOAL  HOAL  H  0  0  N  N  N  -3.472  25.709  46.028   0.000  -1.865   1.073  HOAL  DXL  20  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DXL  CAF  OAA   SING  N  N   1  
DXL  OAA  HOAA  SING  N  N   2  
DXL  CAG  OAB   SING  N  N   3  
DXL  OAB  HOAB  SING  N  N   4  
DXL  CAI  OAC   SING  N  N   5  
DXL  OAC  HOAC  SING  N  N   6  
DXL  OAD  CAJ   SING  N  N   7  
DXL  OAD  HOAD  SING  N  N   8  
DXL  OAE  CAF   DOUB  N  N   9  
DXL  CAF  CAG   SING  N  N  10  
DXL  CAH  CAG   SING  N  N  11  
DXL  CAG  HAG   SING  N  N  12  
DXL  CAI  CAH   SING  N  N  13  
DXL  CAH  OAL   SING  N  N  14  
DXL  CAH  HAH   SING  N  N  15  
DXL  CAJ  CAI   SING  N  N  16  
DXL  CAI  HAI   SING  N  N  17  
DXL  OAK  CAJ   DOUB  N  N  18  
DXL  OAL  HOAL  SING  N  N  19  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
DXL  SMILES            ACDLabs               12.01  "O=C(O)C(O)C(O)C(O)C(=O)O"  
DXL  SMILES_CANONICAL  CACTVS                3.370  "O[C@H]([C@@H](O)C(O)=O)[C@H](O)C(O)=O"  
DXL  SMILES            CACTVS                3.370  "O[CH]([CH](O)C(O)=O)[CH](O)C(O)=O"  
DXL  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.0  "[C@@H](C([C@@H](C(=O)O)O)O)(C(=O)O)O"  
DXL  SMILES            "OpenEye OEToolkits"  1.7.0  "C(C(C(=O)O)O)(C(C(=O)O)O)O"  
DXL  InChI             InChI                 1.03   "InChI=1S/C5H8O7/c6-1(2(7)4(9)10)3(8)5(11)12/h1-3,6-8H,(H,9,10)(H,11,12)/t1-,2-,3+"  
DXL  InChIKey          InChI                 1.03   NPTTZSYLTYJCPR-FFEAPLRNSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
DXL  "SYSTEMATIC NAME"  ACDLabs               12.01  "D-xylaric acid"  
DXL  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.0  "(2R,4S)-2,3,4-trihydroxypentanedioic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
DXL  "Create component"   2010-09-27  RCSB  
DXL  "Modify descriptor"  2011-06-04  RCSB  
DXL  "Modify synonyms"    2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     DXL
_pdbx_chem_comp_synonyms.name        m-Xylarate
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
