data_AUL
# 
_chem_comp.id                                    AUL 
_chem_comp.name                                  
;2'-deoxy-5-{(1E)-5-[(10-hydroxydecanoyl)amino]pent-1-en-1-yl}uridine 5'-(tetrahydrogen triphosphate)
;
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C24 H42 N3 O16 P3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2016-03-17 
_chem_comp.pdbx_modified_date                    2016-12-02 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        721.522 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     AUL 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5E41 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
AUL O36   O1  O 0 1 N N N 22.615 -9.744  -4.092  8.778  -1.913 -1.192 O36   AUL 1  
AUL C35   C1  C 0 1 N N N 21.669 -10.041 -3.383  8.325  -1.231 -0.296 C35   AUL 2  
AUL C37   C2  C 0 1 N N N 21.213 -9.105  -2.277  9.179  -0.171 0.349  C37   AUL 3  
AUL C38   C3  C 0 1 N N N 20.863 -7.721  -2.820  10.563 -0.163 -0.305 C38   AUL 4  
AUL C39   C4  C 0 1 N N N 20.863 -6.669  -1.715  11.430 0.914  0.351  C39   AUL 5  
AUL C40   C5  C 0 1 N N N 19.649 -6.786  -0.797  12.813 0.922  -0.303 C40   AUL 6  
AUL C41   C6  C 0 1 N N N 19.989 -6.573  0.677   13.681 1.998  0.352  C41   AUL 7  
AUL C42   C7  C 0 1 N N N 19.230 -5.380  1.245   15.064 2.007  -0.302 C42   AUL 8  
AUL C43   C8  C 0 1 N N N 19.379 -5.313  2.761   15.932 3.083  0.354  C43   AUL 9  
AUL C44   C9  C 0 1 N N N 18.676 -4.084  3.326   17.315 3.091  -0.300 C44   AUL 10 
AUL C45   C10 C 0 1 N N N 19.594 -2.867  3.305   18.183 4.167  0.355  C45   AUL 11 
AUL O46   O2  O 0 1 N N N 18.824 -1.676  3.511   19.475 4.175  -0.255 O46   AUL 12 
AUL N34   N1  N 0 1 N N N 21.021 -11.200 -3.508  7.056  -1.418 0.117  N34   AUL 13 
AUL C33   C11 C 0 1 N N N 21.435 -12.232 -4.447  6.223  -2.444 -0.515 C33   AUL 14 
AUL C32   C12 C 0 1 N N N 20.526 -12.314 -5.669  4.838  -2.449 0.135  C32   AUL 15 
AUL C31   C13 C 0 1 N N N 20.875 -13.492 -6.577  3.968  -3.521 -0.524 C31   AUL 16 
AUL C30   C14 C 0 1 N N N 20.317 -14.780 -6.011  2.604  -3.525 0.116  C30   AUL 17 
AUL C29   C15 C 0 1 N N N 20.107 -15.807 -6.837  1.519  -3.385 -0.634 C29   AUL 18 
AUL C5    C16 C 0 1 N N N 19.548 -17.131 -6.430  0.179  -3.502 -0.023 C5    AUL 19 
AUL C6    C17 C 0 1 N N N 19.316 -18.088 -7.413  -0.947 -3.474 -0.794 C6    AUL 20 
AUL N1    N2  N 0 1 N N N 18.824 -19.296 -7.102  -2.171 -3.585 -0.200 N1    AUL 21 
AUL C2    C18 C 0 1 N N N 18.491 -19.612 -5.770  -2.292 -3.721 1.130  C2    AUL 22 
AUL O2    O3  O 0 1 N N N 18.012 -20.745 -5.490  -3.403 -3.816 1.615  O2    AUL 23 
AUL N3    N3  N 0 1 N N N 18.694 -18.711 -4.813  -1.221 -3.755 1.942  N3    AUL 24 
AUL C4    C19 C 0 1 N N N 19.199 -17.505 -5.029  0.024  -3.657 1.431  C4    AUL 25 
AUL O4    O4  O 0 1 N N N 19.355 -16.736 -4.050  0.999  -3.692 2.159  O4    AUL 26 
AUL "C1'" C20 C 0 1 N N R 18.558 -20.297 -8.141  -3.377 -3.554 -1.031 "C1'" AUL 27 
AUL "O4'" O5  O 0 1 N N N 19.419 -20.141 -9.274  -4.307 -2.569 -0.530 "O4'" AUL 28 
AUL "C4'" C21 C 0 1 N N R 18.631 -19.817 -10.430 -5.592 -2.952 -1.067 "C4'" AUL 29 
AUL "C3'" C22 C 0 1 N N S 17.317 -19.270 -9.899  -5.624 -4.492 -0.956 "C3'" AUL 30 
AUL "O3'" O6  O 0 1 N N N 16.244 -19.498 -10.810 -6.279 -5.063 -2.090 "O3'" AUL 31 
AUL "C2'" C23 C 0 1 N N N 17.136 -20.038 -8.605  -4.131 -4.899 -0.933 "C2'" AUL 32 
AUL "C5'" C24 C 0 1 N N N 19.309 -18.824 -11.370 -6.720 -2.334 -0.237 "C5'" AUL 33 
AUL "O5'" O7  O 0 1 N N N 19.723 -17.650 -10.680 -6.745 -0.921 -0.446 "O5'" AUL 34 
AUL PA    P1  P 0 1 N N N 19.466 -16.181 -11.276 -7.808 0.052  0.273  PA    AUL 35 
AUL O1A   O8  O 0 1 N N N 20.190 -15.149 -10.458 -9.292 -0.299 -0.243 O1A   AUL 36 
AUL O2A   O9  O 0 1 N N N 19.693 -16.227 -12.772 -7.737 -0.137 1.739  O2A   AUL 37 
AUL O3A   O10 O 0 1 N N N 17.892 -15.952 -10.989 -7.463 1.583  -0.088 O3A   AUL 38 
AUL PB    P2  P 0 1 N N N 16.664 -16.134 -12.033 -7.832 3.000  0.581  PB    AUL 39 
AUL O1B   O11 O 0 1 N N N 17.075 -16.814 -13.318 -9.239 2.977  1.040  O1B   AUL 40 
AUL O2B   O12 O 0 1 N N N 15.503 -16.733 -11.262 -6.862 3.270  1.837  O2B   AUL 41 
AUL O3B   O13 O 0 1 N N N 16.277 -14.594 -12.302 -7.642 4.172  -0.506 O3B   AUL 42 
AUL PG    P3  P 0 1 N N N 16.821 -13.697 -13.538 -8.114 5.709  -0.587 PG    AUL 43 
AUL O1G   O14 O 0 1 N N N 17.914 -14.477 -14.248 -8.072 6.204  -2.119 O1G   AUL 44 
AUL O3G   O15 O 0 1 N N N 15.551 -13.500 -14.330 -9.495 5.830  -0.068 O3G   AUL 45 
AUL O2G   O16 O 0 1 N N N 17.306 -12.433 -12.859 -7.126 6.622  0.298  O2G   AUL 46 
AUL H1    H1  H 0 1 N N N 20.324 -9.533  -1.791  8.710  0.804  0.219  H1    AUL 47 
AUL H2    H2  H 0 1 N N N 22.022 -9.005  -1.538  9.282  -0.385 1.413  H2    AUL 48 
AUL H3    H3  H 0 1 N N N 21.604 -7.438  -3.582  11.032 -1.138 -0.174 H3    AUL 49 
AUL H4    H4  H 0 1 N N N 19.863 -7.759  -3.277  10.460 0.052  -1.369 H4    AUL 50 
AUL H6    H5  H 0 1 N N N 21.775 -6.791  -1.112  10.961 1.888  0.220  H6    AUL 51 
AUL H5    H6  H 0 1 N N N 20.860 -5.671  -2.178  11.533 0.699  1.415  H5    AUL 52 
AUL H8    H7  H 0 1 N N N 18.908 -6.030  -1.098  13.283 -0.053 -0.172 H8    AUL 53 
AUL H7    H8  H 0 1 N N N 19.217 -7.791  -0.915  12.711 1.136  -1.367 H7    AUL 54 
AUL H10   H9  H 0 1 N N N 19.716 -7.476  1.243   13.212 2.973  0.222  H10   AUL 55 
AUL H9    H10 H 0 1 N N N 21.070 -6.392  0.774   13.784 1.784  1.416  H9    AUL 56 
AUL H12   H11 H 0 1 N N N 19.629 -4.455  0.803   15.534 1.032  -0.171 H12   AUL 57 
AUL H11   H12 H 0 1 N N N 18.164 -5.477  0.992   14.962 2.221  -1.366 H11   AUL 58 
AUL H13   H13 H 0 1 N N N 18.937 -6.217  3.206   15.462 4.058  0.223  H13   AUL 59 
AUL H14   H14 H 0 1 N N N 20.448 -5.264  3.015   16.034 2.869  1.418  H14   AUL 60 
AUL H16   H15 H 0 1 N N N 17.783 -3.871  2.720   17.785 2.116  -0.169 H16   AUL 61 
AUL H15   H16 H 0 1 N N N 18.374 -4.288  4.364   17.213 3.305  -1.364 H15   AUL 62 
AUL H18   H17 H 0 1 N N N 20.343 -2.961  4.105   17.713 5.142  0.225  H18   AUL 63 
AUL H17   H18 H 0 1 N N N 20.102 -2.810  2.331   18.285 3.953  1.419  H17   AUL 64 
AUL H19   H19 H 0 1 N N N 19.399 -0.920  3.497   20.079 4.835  0.111  H19   AUL 65 
AUL H20   H20 H 0 1 N N N 20.219 -11.366 -2.934  6.694  -0.873 0.833  H20   AUL 66 
AUL H22   H21 H 0 1 N N N 21.420 -13.204 -3.931  6.124  -2.228 -1.579 H22   AUL 67 
AUL H21   H22 H 0 1 N N N 22.459 -12.011 -4.784  6.689  -3.421 -0.384 H21   AUL 68 
AUL H23   H23 H 0 1 N N N 20.624 -11.382 -6.246  4.937  -2.665 1.199  H23   AUL 69 
AUL H24   H24 H 0 1 N N N 19.486 -12.426 -5.329  4.372  -1.472 0.005  H24   AUL 70 
AUL H25   H25 H 0 1 N N N 21.969 -13.576 -6.657  3.870  -3.304 -1.588 H25   AUL 71 
AUL H26   H26 H 0 1 N N N 20.446 -13.319 -7.575  4.434  -4.497 -0.394 H26   AUL 72 
AUL H37   H27 H 0 1 N N N 20.093 -14.866 -4.958  2.510  -3.642 1.186  H37   AUL 73 
AUL H5M   H28 H 0 1 N N N 20.360 -15.671 -7.878  1.615  -3.186 -1.691 H5M   AUL 74 
AUL H27   H29 H 0 1 N N N 19.536 -17.854 -8.444  -0.870 -3.365 -1.866 H27   AUL 75 
AUL H28   H30 H 0 1 N N N 18.451 -18.958 -3.875  -1.343 -3.855 2.899  H28   AUL 76 
AUL H29   H31 H 0 1 N N N 18.634 -21.312 -7.725  -3.118 -3.339 -2.067 H29   AUL 77 
AUL H30   H32 H 0 1 N N N 18.419 -20.736 -10.996 -5.676 -2.645 -2.110 H30   AUL 78 
AUL H31   H33 H 0 1 N N N 17.426 -18.197 -9.680  -6.118 -4.798 -0.034 H31   AUL 79 
AUL H32   H34 H 0 1 N N N 15.440 -19.145 -10.448 -6.327 -6.029 -2.072 H32   AUL 80 
AUL H34   H35 H 0 1 N N N 16.585 -19.438 -7.866  -3.896 -5.535 -1.787 H34   AUL 81 
AUL H33   H36 H 0 1 N N N 16.602 -20.983 -8.781  -3.888 -5.405 0.000  H33   AUL 82 
AUL H35   H37 H 0 1 N N N 18.600 -18.541 -12.163 -7.673 -2.764 -0.544 H35   AUL 83 
AUL H36   H38 H 0 1 N N N 20.191 -19.303 -11.820 -6.549 -2.543 0.819  H36   AUL 84 
AUL H38   H39 H 0 1 N N N 20.737 -14.620 -11.027 -9.411 -0.197 -1.197 H38   AUL 85 
AUL H39   H40 H 0 1 N N N 15.177 -17.497 -11.722 -5.923 3.298  1.609  H39   AUL 86 
AUL H40   H41 H 0 1 N N N 17.613 -14.728 -15.114 -8.344 7.123  -2.243 H40   AUL 87 
AUL H41   H42 H 0 1 N N N 16.711 -11.719 -13.055 -6.202 6.591  0.014  H41   AUL 88 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
AUL O3G   PG    DOUB N N 1  
AUL O1G   PG    SING N N 2  
AUL PG    O2G   SING N N 3  
AUL PG    O3B   SING N N 4  
AUL O1B   PB    DOUB N N 5  
AUL O2A   PA    DOUB N N 6  
AUL O3B   PB    SING N N 7  
AUL PB    O2B   SING N N 8  
AUL PB    O3A   SING N N 9  
AUL "C5'" "O5'" SING N N 10 
AUL "C5'" "C4'" SING N N 11 
AUL PA    O3A   SING N N 12 
AUL PA    "O5'" SING N N 13 
AUL PA    O1A   SING N N 14 
AUL "O3'" "C3'" SING N N 15 
AUL "C4'" "C3'" SING N N 16 
AUL "C4'" "O4'" SING N N 17 
AUL "C3'" "C2'" SING N N 18 
AUL "O4'" "C1'" SING N N 19 
AUL "C2'" "C1'" SING N N 20 
AUL "C1'" N1    SING N N 21 
AUL C6    N1    SING N N 22 
AUL C6    C5    DOUB N N 23 
AUL N1    C2    SING N N 24 
AUL C29   C5    SING N N 25 
AUL C29   C30   DOUB N E 26 
AUL C31   C30   SING N N 27 
AUL C31   C32   SING N N 28 
AUL C5    C4    SING N N 29 
AUL C2    O2    DOUB N N 30 
AUL C2    N3    SING N N 31 
AUL C32   C33   SING N N 32 
AUL C4    N3    SING N N 33 
AUL C4    O4    DOUB N N 34 
AUL C33   N34   SING N N 35 
AUL O36   C35   DOUB N N 36 
AUL N34   C35   SING N N 37 
AUL C35   C37   SING N N 38 
AUL C38   C37   SING N N 39 
AUL C38   C39   SING N N 40 
AUL C39   C40   SING N N 41 
AUL C40   C41   SING N N 42 
AUL C41   C42   SING N N 43 
AUL C42   C43   SING N N 44 
AUL C43   C44   SING N N 45 
AUL C45   C44   SING N N 46 
AUL C45   O46   SING N N 47 
AUL C37   H1    SING N N 48 
AUL C37   H2    SING N N 49 
AUL C38   H3    SING N N 50 
AUL C38   H4    SING N N 51 
AUL C39   H6    SING N N 52 
AUL C39   H5    SING N N 53 
AUL C40   H8    SING N N 54 
AUL C40   H7    SING N N 55 
AUL C41   H10   SING N N 56 
AUL C41   H9    SING N N 57 
AUL C42   H12   SING N N 58 
AUL C42   H11   SING N N 59 
AUL C43   H13   SING N N 60 
AUL C43   H14   SING N N 61 
AUL C44   H16   SING N N 62 
AUL C44   H15   SING N N 63 
AUL C45   H18   SING N N 64 
AUL C45   H17   SING N N 65 
AUL O46   H19   SING N N 66 
AUL N34   H20   SING N N 67 
AUL C33   H22   SING N N 68 
AUL C33   H21   SING N N 69 
AUL C32   H23   SING N N 70 
AUL C32   H24   SING N N 71 
AUL C31   H25   SING N N 72 
AUL C31   H26   SING N N 73 
AUL C30   H37   SING N N 74 
AUL C29   H5M   SING N N 75 
AUL C6    H27   SING N N 76 
AUL N3    H28   SING N N 77 
AUL "C1'" H29   SING N N 78 
AUL "C4'" H30   SING N N 79 
AUL "C3'" H31   SING N N 80 
AUL "O3'" H32   SING N N 81 
AUL "C2'" H34   SING N N 82 
AUL "C2'" H33   SING N N 83 
AUL "C5'" H35   SING N N 84 
AUL "C5'" H36   SING N N 85 
AUL O1A   H38   SING N N 86 
AUL O2B   H39   SING N N 87 
AUL O1G   H40   SING N N 88 
AUL O2G   H41   SING N N 89 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
AUL SMILES           ACDLabs              12.01 "O=C(CCCCCCCCCO)NCCC[C@H]=CC=1C(NC(N(C=1)C2OC(C(C2)O)COP(OP(O)(=O)OP(O)(O)=O)(O)=O)=O)=O" 
AUL InChI            InChI                1.03  
;InChI=1S/C24H42N3O16P3/c28-14-10-5-3-1-2-4-8-12-21(30)25-13-9-6-7-11-18-16-27(24(32)26-23(18)31)22-15-19(29)20(41-22)17-40-45(36,37)43-46(38,39)42-44(33,34)35/h7,11,16,19-20,22,28-29H,1-6,8-10,12-15,17H2,(H,25,30)(H,36,37)(H,38,39)(H,26,31,32)(H2,33,34,35)/b11-7+/t19-,20+,22+/m0/s1
;
AUL InChIKey         InChI                1.03  YHNZXWUFXLSXJT-GJAYGDSISA-N 
AUL SMILES_CANONICAL CACTVS               3.385 "OCCCCCCCCCC(=O)NCCC/C=C/C1=CN([C@H]2C[C@H](O)[C@@H](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)O2)C(=O)NC1=O" 
AUL SMILES           CACTVS               3.385 "OCCCCCCCCCC(=O)NCCCC=CC1=CN([CH]2C[CH](O)[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)O2)C(=O)NC1=O" 
AUL SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 "C1[C@@H]([C@H](O[C@H]1N2C=C(C(=O)NC2=O)/C=C/CCCNC(=O)CCCCCCCCCO)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O" 
AUL SMILES           "OpenEye OEToolkits" 2.0.4 "C1C(C(OC1N2C=C(C(=O)NC2=O)C=CCCCNC(=O)CCCCCCCCCO)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
AUL "SYSTEMATIC NAME" ACDLabs              12.01 
;2'-deoxy-5-{(1E)-5-[(10-hydroxydecanoyl)amino]pent-1-en-1-yl}uridine 5'-(tetrahydrogen triphosphate)
;
AUL "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.4 "[(2~{R},3~{S},5~{R})-3-oxidanyl-5-[5-[(~{E})-5-(10-oxidanyldecanoylamino)pent-1-enyl]-2,4-bis(oxidanylidene)pyrimidin-1-yl]oxolan-2-yl]methyl [oxidanyl(phosphonooxy)phosphoryl] hydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
AUL "Create component" 2016-03-17 EBI  
AUL "Initial release"  2016-12-07 RCSB 
# 
