data_AGL
#

_chem_comp.id                                   AGL
_chem_comp.name                                 "4-amino-4,6-dideoxy-alpha-D-glucopyranose"
_chem_comp.type                                 "D-saccharide, alpha linking"
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C6 H13 N O4"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        
;4,6-DIDEOXY-4-AMINO-ALPHA-D-GLUCOSE; 4-amino-4-deoxy-alpha-D-quinovopyranose; 4-amino-4,6-dideoxy-alpha-D-glucose;
4-amino-4,6-dideoxy-D-glucose; 4-amino-4,6-dideoxy-glucose
;

_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    1999-07-08
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       163.172
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    AGL
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1CPU
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  AGL  "4,6-DIDEOXY-4-AMINO-ALPHA-D-GLUCOSE"      PDB  ?  
2  AGL  4-amino-4-deoxy-alpha-D-quinovopyranose    PDB  ?  
3  AGL  "4-amino-4,6-dideoxy-alpha-D-glucose"      PDB  ?  
4  AGL  "4-amino-4,6-dideoxy-D-glucose"            PDB  ?  
5  AGL  "4-amino-4,6-dideoxy-glucose"              PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
AGL  C1    C1    C  0  1  N  N  S  6.532  14.893  42.040   1.449  -0.221  -0.706  C1    AGL   1  
AGL  C2    C2    C  0  1  N  N  R  6.858  14.615  43.538   0.098  -0.522  -1.360  C2    AGL   2  
AGL  C3    C3    C  0  1  N  N  S  7.374  15.866  44.284  -1.006   0.189  -0.572  C3    AGL   3  
AGL  C4    C4    C  0  1  N  N  S  8.495  16.520  43.441  -0.892  -0.211   0.902  C4    AGL   4  
AGL  C5    C5    C  0  1  N  N  R  7.884  16.889  42.062   0.532   0.066   1.386  C5    AGL   5  
AGL  C6    C6    C  0  1  N  N  N  8.903  17.657  41.210   0.647  -0.297   2.867  C6    AGL   6  
AGL  O1    O1    O  0  1  N  Y  N  5.291  15.546  41.910   1.666   1.190  -0.693  O1    AGL   7  
AGL  O2    O2    O  0  1  N  N  N  5.692  14.126  44.166   0.105  -0.051  -2.709  O2    AGL   8  
AGL  O3    O3    O  0  1  N  N  N  7.902  15.456  45.526  -2.284  -0.199  -1.080  O3    AGL   9  
AGL  N4    N4    N  0  1  N  N  N  8.999  17.748  44.102  -1.843   0.573   1.700  N4    AGL  10  
AGL  O5    O5    O  0  1  N  N  N  7.514  15.682  41.384   1.458  -0.714   0.632  O5    AGL  11  
AGL  H1    H1    H  0  1  N  N  N  6.508  13.889  41.554   2.243  -0.705  -1.275  H1    AGL  12  
AGL  H2    H2    H  0  1  N  N  N  7.680  13.862  43.577  -0.080  -1.597  -1.349  H2    AGL  13  
AGL  H3    H3    H  0  1  N  N  N  6.548  16.597  44.442  -0.888   1.268  -0.669  H3    AGL  14  
AGL  H4    H4    H  0  1  N  N  N  9.350  15.813  43.328  -1.114  -1.273   1.010  H4    AGL  15  
AGL  H5    H5    H  0  1  N  N  N  6.990  17.536  42.218   0.760   1.124   1.254  H5    AGL  16  
AGL  H61   H61   H  0  1  N  N  N  8.464  17.922  40.219   1.662  -0.097   3.213  H61   AGL  17  
AGL  H62   H62   H  0  1  N  N  N  9.295  18.554  41.742  -0.057   0.300   3.444  H62   AGL  18  
AGL  H63   H63   H  0  1  N  N  N  9.860  17.095  41.102   0.420  -1.355   3.000  H63   AGL  19  
AGL  HO1   HO1   H  0  1  N  Y  N  5.092  15.715  40.996   2.527   1.337  -0.279  HO1   AGL  20  
AGL  HO2   HO2   H  0  1  N  Y  N  5.890  13.956  45.079   0.818  -0.519  -3.165  HO2   AGL  21  
AGL  HO3   HO3   H  0  1  N  Y  N  8.219  16.225  45.984  -2.305   0.060  -2.011  HO3   AGL  22  
AGL  HN41  HN41  H  0  0  N  N  N  9.737  18.179  43.546  -1.732   0.276   2.658  HN41  AGL  23  
AGL  HN42  HN42  H  0  0  N  N  N  9.302  17.565  45.058  -1.536   1.533   1.657  HN42  AGL  24  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
AGL  C1  C2    SING  N  N   1  
AGL  C1  O1    SING  N  N   2  
AGL  C1  O5    SING  N  N   3  
AGL  C1  H1    SING  N  N   4  
AGL  C2  C3    SING  N  N   5  
AGL  C2  O2    SING  N  N   6  
AGL  C2  H2    SING  N  N   7  
AGL  C3  C4    SING  N  N   8  
AGL  C3  O3    SING  N  N   9  
AGL  C3  H3    SING  N  N  10  
AGL  C4  C5    SING  N  N  11  
AGL  C4  N4    SING  N  N  12  
AGL  C4  H4    SING  N  N  13  
AGL  C5  C6    SING  N  N  14  
AGL  C5  O5    SING  N  N  15  
AGL  C5  H5    SING  N  N  16  
AGL  C6  H61   SING  N  N  17  
AGL  C6  H62   SING  N  N  18  
AGL  C6  H63   SING  N  N  19  
AGL  O1  HO1   SING  N  N  20  
AGL  O2  HO2   SING  N  N  21  
AGL  O3  HO3   SING  N  N  22  
AGL  N4  HN41  SING  N  N  23  
AGL  N4  HN42  SING  N  N  24  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
AGL  SMILES            ACDLabs               10.04  "OC1C(N)C(OC(O)C1O)C"  
AGL  SMILES_CANONICAL  CACTVS                3.341  "C[C@H]1O[C@H](O)[C@H](O)[C@@H](O)[C@@H]1N"  
AGL  SMILES            CACTVS                3.341  "C[CH]1O[CH](O)[CH](O)[CH](O)[CH]1N"  
AGL  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "C[C@@H]1[C@H]([C@@H]([C@H]([C@H](O1)O)O)O)N"  
AGL  SMILES            "OpenEye OEToolkits"  1.5.0  "CC1C(C(C(C(O1)O)O)O)N"  
AGL  InChI             InChI                 1.03   "InChI=1S/C6H13NO4/c1-2-3(7)4(8)5(9)6(10)11-2/h2-6,8-10H,7H2,1H3/t2-,3-,4+,5-,6+/m1/s1"  
AGL  InChIKey          InChI                 1.03   RJKBJEZZABBYBA-DVKNGEFBSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
AGL  "SYSTEMATIC NAME"                      ACDLabs               10.04  "4-amino-4,6-dideoxy-alpha-D-glucopyranose"  
AGL  "SYSTEMATIC NAME"                      "OpenEye OEToolkits"  1.5.0  "(2S,3R,4S,5S,6R)-5-amino-6-methyl-oxane-2,3,4-triol"  
AGL  "CONDENSED IUPAC CARBOHYDRATE SYMBOL"  GMML                  1.0    DQuip[4N]a  
AGL  "IUPAC CARBOHYDRATE SYMBOL"            PDB-CARE              1.0    a-D-6-deoxy-Glcp4N  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
AGL  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
AGL  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
AGL  "CARBOHYDRATE ANOMER"                  alpha     PDB  ?  
AGL  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
AGL  "Create component"          1999-07-08  PDBJ  
AGL  "Modify descriptor"         2011-06-04  RCSB  
AGL  "Other modification"        2020-07-03  RCSB  
AGL  "Modify name"               2020-07-17  RCSB  
AGL  "Modify synonyms"           2020-07-17  RCSB  
AGL  "Modify linking type"       2020-07-17  RCSB  
AGL  "Modify leaving atom flag"  2020-07-17  RCSB  
##
