data_A1L
# 
_chem_comp.id                                    A1L 
_chem_comp.name                                  "[2-[[(2S)-1-[bis(phenylmethyl)amino]-5-[[N-(methylcarbamoyl)carbamimidoyl]amino]-1-oxidanylidene-pentan-2-yl]amino]-2-oxidanylidene-ethyl]-diazonio-azanide" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C24 H31 N9 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2013-06-25 
_chem_comp.pdbx_modified_date                    2013-09-13 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        493.561 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     A1L 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3WD2 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
A1L C9  C9  C 0  1 N N N -20.583 -7.054 -31.305 9.951  0.432  0.775  C9  A1L 1  
A1L N6  N6  N 0  1 N N N -21.011 -6.155 -30.203 8.615  0.142  1.302  N6  A1L 2  
A1L C8  C8  C 0  1 N N N -20.336 -5.019 -29.960 7.538  0.239  0.498  C8  A1L 3  
A1L O3  O3  O 0  1 N N N -19.341 -4.634 -30.596 7.675  0.567  -0.664 O3  A1L 4  
A1L N4  N4  N 0  1 N N N -20.801 -4.296 -28.912 6.309  -0.027 0.983  N4  A1L 5  
A1L C7  C7  C 0  1 N N N -20.321 -3.121 -28.465 5.206  0.072  0.159  C7  A1L 6  
A1L N5  N5  N 0  1 N N N -19.258 -2.496 -29.032 5.352  0.423  -1.086 N5  A1L 7  
A1L N3  N3  N 0  1 N N N -20.951 -2.627 -27.387 3.952  -0.200 0.653  N3  A1L 8  
A1L C6  C6  C 0  1 N N N -20.568 -1.404 -26.661 2.781  -0.094 -0.221 C6  A1L 9  
A1L C5  C5  C 0  1 N N N -20.797 -0.226 -27.560 1.520  -0.447 0.571  C5  A1L 10 
A1L C4  C4  C 0  1 N N N -21.624 0.874  -26.910 0.287  -0.218 -0.306 C4  A1L 11 
A1L C2  C2  C 0  1 N N S -21.865 1.875  -28.035 -0.978 -0.451 0.523  C2  A1L 12 
A1L N2  N2  N 0  1 N N N -20.933 1.430  -29.111 -1.054 -1.862 0.910  N2  A1L 13 
A1L C3  C3  C 0  1 N N N -20.781 1.963  -30.319 -1.104 -2.819 -0.038 C3  A1L 14 
A1L O1  O1  O 0  1 N N N -21.387 2.963  -30.693 -1.086 -2.513 -1.211 O1  A1L 15 
A1L C10 C10 C 0  1 N N N -19.751 1.229  -31.231 -1.183 -4.270 0.361  C10 A1L 16 
A1L N7  N7  N -1 1 N N N -19.475 2.053  -32.426 -1.226 -5.105 -0.842 N7  A1L 17 
A1L N8  N8  N 1  1 N N N -19.249 1.514  -33.415 -1.294 -6.349 -0.738 N8  A1L 18 
A1L N9  N9  N 0  1 N N N -18.922 1.175  -34.468 -1.349 -7.378 -0.651 N9  A1L 19 
A1L C1  C1  C 0  1 N N N -21.579 3.295  -27.546 -2.189 -0.089 -0.297 C1  A1L 20 
A1L O2  O2  O 0  1 N N N -20.470 3.792  -27.746 -2.627 -0.874 -1.111 O2  A1L 21 
A1L N1  N1  N 0  1 N N N -22.581 3.946  -26.928 -2.785 1.108  -0.126 N1  A1L 22 
A1L C12 C12 C 0  1 N N N -22.373 5.346  -26.453 -2.197 2.096  0.781  C12 A1L 23 
A1L C13 C13 C 0  1 Y N N -21.752 6.211  -27.589 -1.344 3.056  -0.006 C13 A1L 24 
A1L C20 C20 C 0  1 Y N N -21.012 7.360  -27.297 -1.926 4.139  -0.640 C20 A1L 25 
A1L C21 C21 C 0  1 Y N N -20.446 8.103  -28.349 -1.143 5.019  -1.363 C21 A1L 26 
A1L C22 C22 C 0  1 Y N N -20.615 7.732  -29.687 0.222  4.817  -1.453 C22 A1L 27 
A1L C23 C23 C 0  1 Y N N -21.355 6.592  -29.990 0.804  3.735  -0.820 C23 A1L 28 
A1L C24 C24 C 0  1 Y N N -21.912 5.847  -28.938 0.022  2.858  -0.091 C24 A1L 29 
A1L C11 C11 C 0  1 N N N -23.898 3.313  -26.677 -4.022 1.420  -0.847 C11 A1L 30 
A1L C14 C14 C 0  1 Y N N -24.934 3.476  -27.827 -5.207 1.108  0.029  C14 A1L 31 
A1L C15 C15 C 0  1 Y N N -24.547 3.542  -29.172 -5.712 -0.178 0.078  C15 A1L 32 
A1L C16 C16 C 0  1 Y N N -25.507 3.677  -30.184 -6.796 -0.465 0.886  C16 A1L 33 
A1L C17 C17 C 0  1 Y N N -26.863 3.741  -29.863 -7.375 0.533  1.646  C17 A1L 34 
A1L C18 C18 C 0  1 Y N N -27.262 3.671  -28.529 -6.870 1.819  1.598  C18 A1L 35 
A1L C19 C19 C 0  1 Y N N -26.301 3.537  -27.520 -5.786 2.107  0.790  C19 A1L 36 
A1L H1  H1  H 0  1 N N N -21.252 -7.926 -31.349 9.984  1.459  0.414  H1  A1L 37 
A1L H2  H2  H 0  1 N N N -20.627 -6.510 -32.260 10.690 0.301  1.566  H2  A1L 38 
A1L H3  H3  H 0  1 N N N -19.552 -7.392 -31.123 10.174 -0.250 -0.046 H3  A1L 39 
A1L H4  H4  H 0  1 N N N -21.803 -6.395 -29.641 8.506  -0.119 2.230  H4  A1L 40 
A1L H5  H5  H 0  1 N N N -21.584 -4.676 -28.419 6.200  -0.289 1.911  H5  A1L 41 
A1L H6  H6  H 0  1 N N N -19.021 -1.651 -28.553 4.577  0.493  -1.665 H6  A1L 42 
A1L H7  H7  H 0  1 N N N -21.746 -3.131 -27.049 3.843  -0.461 1.581  H7  A1L 43 
A1L H8  H8  H 0  1 N N N -19.506 -1.456 -26.381 2.700  0.925  -0.599 H8  A1L 44 
A1L H9  H9  H 0  1 N N N -21.182 -1.303 -25.754 2.890  -0.784 -1.058 H9  A1L 45 
A1L H10 H10 H 0  1 N N N -21.323 -0.572 -28.462 1.562  -1.493 0.873  H10 A1L 46 
A1L H11 H11 H 0  1 N N N -19.820 0.193  -27.843 1.459  0.186  1.456  H11 A1L 47 
A1L H12 H12 H 0  1 N N N -21.070 1.342  -26.083 0.293  0.806  -0.680 H12 A1L 48 
A1L H13 H13 H 0  1 N N N -22.577 0.474  -26.533 0.305  -0.912 -1.146 H13 A1L 49 
A1L H14 H14 H 0  1 N N N -22.907 1.804  -28.380 -0.945 0.170  1.418  H14 A1L 50 
A1L H15 H15 H 0  1 N N N -20.357 0.641  -28.899 -1.069 -2.107 1.848  H15 A1L 51 
A1L H16 H16 H 0  1 N N N -20.164 0.258  -31.543 -0.307 -4.533 0.954  H16 A1L 52 
A1L H17 H17 H 0  1 N N N -18.817 1.068  -30.673 -2.085 -4.437 0.951  H17 A1L 53 
A1L H19 H19 H 0  1 N N N -21.693 5.339  -25.588 -2.992 2.646  1.285  H19 A1L 54 
A1L H20 H20 H 0  1 N N N -23.341 5.777  -26.156 -1.581 1.587  1.523  H20 A1L 55 
A1L H21 H21 H 0  1 N N N -20.876 7.675  -26.273 -2.992 4.296  -0.570 H21 A1L 56 
A1L H22 H22 H 0  1 N N N -19.865 8.984  -28.117 -1.598 5.864  -1.858 H22 A1L 57 
A1L H23 H23 H 0  1 N N N -20.176 8.324  -30.477 0.833  5.505  -2.018 H23 A1L 58 
A1L H24 H24 H 0  1 N N N -21.498 6.286  -31.016 1.870  3.578  -0.890 H24 A1L 59 
A1L H25 H25 H 0  1 N N N -22.484 4.962  -29.174 0.477  2.013  0.404  H25 A1L 60 
A1L H26 H26 H 0  1 N N N -24.324 3.761  -25.767 -4.032 2.478  -1.109 H26 A1L 61 
A1L H27 H27 H 0  1 N N N -23.735 2.237  -26.514 -4.074 0.820  -1.756 H27 A1L 62 
A1L H28 H28 H 0  1 N N N -23.500 3.488  -29.431 -5.259 -0.958 -0.516 H28 A1L 63 
A1L H29 H29 H 0  1 N N N -25.196 3.732  -31.217 -7.190 -1.470 0.923  H29 A1L 64 
A1L H30 H30 H 0  1 N N N -27.601 3.844  -30.645 -8.222 0.309  2.277  H30 A1L 65 
A1L H31 H31 H 0  1 N N N -28.310 3.720  -28.275 -7.322 2.599  2.192  H31 A1L 66 
A1L H32 H32 H 0  1 N N N -26.617 3.480  -26.489 -5.389 3.110  0.756  H32 A1L 67 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A1L N9  N8  TRIP N N 1  
A1L N8  N7  SING N N 2  
A1L N7  C10 SING N N 3  
A1L C9  N6  SING N N 4  
A1L C10 C3  SING N N 5  
A1L O1  C3  DOUB N N 6  
A1L O3  C8  DOUB N N 7  
A1L C3  N2  SING N N 8  
A1L N6  C8  SING N N 9  
A1L C16 C17 DOUB Y N 10 
A1L C16 C15 SING Y N 11 
A1L C23 C22 DOUB Y N 12 
A1L C23 C24 SING Y N 13 
A1L C8  N4  SING N N 14 
A1L C17 C18 SING Y N 15 
A1L C22 C21 SING Y N 16 
A1L C15 C14 DOUB Y N 17 
A1L N2  C2  SING N N 18 
A1L N5  C7  DOUB N N 19 
A1L C24 C13 DOUB Y N 20 
A1L N4  C7  SING N N 21 
A1L C18 C19 DOUB Y N 22 
A1L C7  N3  SING N N 23 
A1L C21 C20 DOUB Y N 24 
A1L C2  C1  SING N N 25 
A1L C2  C4  SING N N 26 
A1L C14 C19 SING Y N 27 
A1L C14 C11 SING N N 28 
A1L O2  C1  DOUB N N 29 
A1L C13 C20 SING Y N 30 
A1L C13 C12 SING N N 31 
A1L C5  C4  SING N N 32 
A1L C5  C6  SING N N 33 
A1L C1  N1  SING N N 34 
A1L N3  C6  SING N N 35 
A1L N1  C11 SING N N 36 
A1L N1  C12 SING N N 37 
A1L C9  H1  SING N N 38 
A1L C9  H2  SING N N 39 
A1L C9  H3  SING N N 40 
A1L N6  H4  SING N N 41 
A1L N4  H5  SING N N 42 
A1L N5  H6  SING N N 43 
A1L N3  H7  SING N N 44 
A1L C6  H8  SING N N 45 
A1L C6  H9  SING N N 46 
A1L C5  H10 SING N N 47 
A1L C5  H11 SING N N 48 
A1L C4  H12 SING N N 49 
A1L C4  H13 SING N N 50 
A1L C2  H14 SING N N 51 
A1L N2  H15 SING N N 52 
A1L C10 H16 SING N N 53 
A1L C10 H17 SING N N 54 
A1L C12 H19 SING N N 55 
A1L C12 H20 SING N N 56 
A1L C20 H21 SING N N 57 
A1L C21 H22 SING N N 58 
A1L C22 H23 SING N N 59 
A1L C23 H24 SING N N 60 
A1L C24 H25 SING N N 61 
A1L C11 H26 SING N N 62 
A1L C11 H27 SING N N 63 
A1L C15 H28 SING N N 64 
A1L C16 H29 SING N N 65 
A1L C17 H30 SING N N 66 
A1L C18 H31 SING N N 67 
A1L C19 H32 SING N N 68 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
A1L SMILES           ACDLabs              12.01 "N#[N+][N-]CC(=O)NC(C(=O)N(Cc1ccccc1)Cc2ccccc2)CCCNC(=[N@H])NC(=O)NC"                                                                                                                               
A1L InChI            InChI                1.03  "InChI=1S/C24H31N9O3/c1-27-24(36)31-23(25)28-14-8-13-20(30-21(34)15-29-32-26)22(35)33(16-18-9-4-2-5-10-18)17-19-11-6-3-7-12-19/h2-7,9-12,20H,8,13-17H2,1H3,(H,30,34)(H4,25,27,28,31,36)/t20-/m0/s1" 
A1L InChIKey         InChI                1.03  WCLXSHAWFUUDKF-FQEVSTJZSA-N                                                                                                                                                                         
A1L SMILES_CANONICAL CACTVS               3.385 "CNC(=O)NC(=N)NCCC[C@H](NC(=O)C[N-][N+]#N)C(=O)N(Cc1ccccc1)Cc2ccccc2"                                                                                                                               
A1L SMILES           CACTVS               3.385 "CNC(=O)NC(=N)NCCC[CH](NC(=O)C[N-][N+]#N)C(=O)N(Cc1ccccc1)Cc2ccccc2"                                                                                                                                
A1L SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "[H]/N=C(\NCCC[C@@H](C(=O)N(Cc1ccccc1)Cc2ccccc2)NC(=O)C[N-][N+]#N)/NC(=O)NC"                                                                                                                        
A1L SMILES           "OpenEye OEToolkits" 1.7.6 "CNC(=O)NC(=N)NCCCC(C(=O)N(Cc1ccccc1)Cc2ccccc2)NC(=O)C[N-][N+]#N"                                                                                                                                   
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
A1L "SYSTEMATIC NAME" ACDLabs              12.01 "N~2~-(azidoacetyl)-N,N-dibenzyl-N~5~-[N-(methylcarbamoyl)carbamimidoyl]-L-ornithinamide"                                                                     
A1L "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[2-[[(2S)-1-[bis(phenylmethyl)amino]-5-[[N-(methylcarbamoyl)carbamimidoyl]amino]-1-oxidanylidene-pentan-2-yl]amino]-2-oxidanylidene-ethyl]-diazonio-azanide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
A1L "Create component" 2013-06-25 PDBJ 
A1L "Initial release"  2013-09-18 RCSB 
# 
