data_9XL
# 
_chem_comp.id                                    9XL 
_chem_comp.name                                  "(2S)-2-amino-4-([3-(3-carbamoylphenyl)prop-2-yn-1-yl]{[(1R,2R,3S,4R)-4-(4-chloro-7H-pyrrolo[2,3-d]pyrimidin-7-yl)-2,3-dihydroxycyclopentyl]methyl}amino)butanoic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C26 H29 Cl N6 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2021-11-01 
_chem_comp.pdbx_modified_date                    2022-10-28 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        540.999 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     9XL 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7SOK 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
9XL C13 C1  C  0 1 N N R 14.692 12.994 35.941 0.910  -0.569 -0.973 C13 9XL 1  
9XL C17 C2  C  0 1 N N N 15.833 8.509  35.742 -3.137 -1.122 -1.778 C17 9XL 2  
9XL C20 C3  C  0 1 Y N N 15.333 4.940  35.958 -6.171 -2.895 -1.582 C20 9XL 3  
9XL C21 C4  C  0 1 Y N N 15.038 3.703  36.490 -7.414 -3.294 -1.132 C21 9XL 4  
9XL C22 C5  C  0 1 Y N N 14.668 3.580  37.810 -7.984 -2.687 -0.031 C22 9XL 5  
9XL C24 C6  C  0 1 N N N 14.184 4.580  40.048 -7.918 -1.015 1.814  C24 9XL 6  
9XL C28 C7  C  0 1 N N N 14.389 10.998 33.789 -2.049 1.630  -1.633 C28 9XL 7  
9XL C02 C8  C  0 1 Y N N 13.253 18.237 40.246 8.005  -0.679 0.250  C02 9XL 8  
9XL C04 C9  C  0 1 Y N N 11.993 18.107 38.323 7.146  -2.816 0.184  C04 9XL 9  
9XL C06 C10 C  0 1 Y N N 13.832 16.699 38.500 5.630  -1.092 0.119  C06 9XL 10 
9XL C07 C11 C  0 1 Y N N 14.116 17.233 39.745 6.703  -0.180 0.183  C07 9XL 11 
9XL C08 C12 C  0 1 Y N N 15.275 16.557 40.206 6.104  1.154  0.160  C08 9XL 12 
9XL C09 C13 C  0 1 Y N N 15.628 15.656 39.199 4.775  0.982  0.087  C09 9XL 13 
9XL C11 C14 C  0 1 N N R 14.745 15.009 36.947 3.126  -0.915 -0.015 C11 9XL 14 
9XL C12 C15 C  0 1 N N N 14.142 13.832 37.121 2.411  -0.447 -1.307 C12 9XL 15 
9XL C14 C16 C  0 1 N N N 14.745 11.605 36.305 0.136  0.586  -1.613 C14 9XL 16 
9XL C16 C17 C  0 1 N N N 16.159 9.905  35.136 -1.813 -0.697 -2.260 C16 9XL 17 
9XL C18 C18 C  0 1 N N N 15.583 7.467  36.176 -4.194 -1.460 -1.394 C18 9XL 18 
9XL C19 C19 C  0 1 Y N N 15.253 6.050  36.753 -5.482 -1.873 -0.926 C19 9XL 19 
9XL C23 C20 C  0 1 Y N N 14.591 4.692  38.588 -7.306 -1.664 0.635  C23 9XL 20 
9XL C27 C21 C  0 1 Y N N 14.877 5.936  38.056 -6.051 -1.257 0.186  C27 9XL 21 
9XL C29 C22 C  0 1 N N N 13.198 10.140 33.507 -1.791 2.596  -0.476 C29 9XL 22 
9XL C30 C23 C  0 1 N N S 12.803 10.045 32.020 -2.676 3.834  -0.639 C30 9XL 23 
9XL C32 C24 C  0 1 N N N 12.616 8.581  31.679 -2.513 4.729  0.563  C32 9XL 24 
9XL C35 C25 C  0 1 N N R 16.149 13.599 35.690 0.793  -0.496 0.559  C35 9XL 25 
9XL C37 C26 C  0 1 N N S 16.276 14.610 36.518 2.227  -0.334 1.104  C37 9XL 26 
9XL N03 N1  N  0 1 Y N N 12.220 18.633 39.506 8.177  -1.992 0.245  N03 9XL 27 
9XL N05 N2  N  0 1 Y N N 12.773 17.151 37.813 5.902  -2.394 0.125  N05 9XL 28 
9XL N10 N3  N  0 1 Y N N 14.751 15.776 38.207 4.478  -0.356 0.062  N10 9XL 29 
9XL N15 N4  N  0 1 N N N 14.876 10.633 35.145 -1.304 0.384  -1.405 N15 9XL 30 
9XL N25 N5  N  0 1 N N N 13.295 5.572  40.627 -9.132 -1.409 2.247  N25 9XL 31 
9XL N31 N6  N  0 1 N N N 11.566 10.704 31.780 -2.279 4.564  -1.850 N31 9XL 32 
9XL O26 O1  O  0 1 N N N 14.586 3.691  40.702 -7.326 -0.124 2.393  O26 9XL 33 
9XL O33 O2  O  0 1 N N N 13.621 7.881  31.396 -1.792 5.697  0.502  O33 9XL 34 
9XL O34 O3  O  0 1 N N N 11.476 8.081  31.693 -3.169 4.452  1.700  O34 9XL 35 
9XL O36 O4  O  0 1 N N N 16.187 14.018 34.312 0.212  -1.701 1.063  O36 9XL 36 
9XL O38 O5  O  0 1 N N N 16.901 15.725 35.902 2.390  -1.077 2.313  O38 9XL 37 
9XL CL1 CL1 CL 0 0 N N N 13.539 18.971 41.874 9.366  0.395  0.331  CL1 9XL 38 
9XL H1  H1  H  0 1 N N N 14.073 13.154 35.046 0.524  -1.522 -1.334 H1  9XL 39 
9XL H2  H2  H  0 1 N N N 15.625 5.032  34.922 -5.729 -3.377 -2.442 H2  9XL 40 
9XL H3  H3  H  0 1 N N N 15.098 2.823  35.866 -7.943 -4.085 -1.644 H3  9XL 41 
9XL H4  H4  H  0 1 N N N 14.441 2.609  38.224 -8.957 -3.003 0.316  H4  9XL 42 
9XL H5  H5  H  0 1 N N N 15.175 10.811 33.042 -3.115 1.410  -1.693 H5  9XL 43 
9XL H6  H6  H  0 1 N N N 14.104 12.060 33.763 -1.719 2.085  -2.567 H6  9XL 44 
9XL H7  H7  H  0 1 N N N 11.150 18.459 37.746 7.333  -3.880 0.182  H7  9XL 45 
9XL H8  H8  H  0 1 N N N 15.783 16.709 41.147 6.630  2.097  0.195  H8  9XL 46 
9XL H9  H9  H  0 1 N N N 16.469 14.978 39.222 4.047  1.779  0.054  H9  9XL 47 
9XL H10 H10 H  0 1 N N N 14.299 15.602 36.135 3.157  -2.004 0.036  H10 9XL 48 
9XL H11 H11 H  0 1 N N N 13.048 13.933 37.061 2.670  -1.096 -2.143 H11 9XL 49 
9XL H12 H12 H  0 1 N N N 14.416 13.384 38.088 2.670  0.588  -1.532 H12 9XL 50 
9XL H13 H13 H  0 1 N N N 13.821 11.361 36.850 0.441  1.526  -1.154 H13 9XL 51 
9XL H14 H14 H  0 1 N N N 15.610 11.461 36.968 0.348  0.618  -2.682 H14 9XL 52 
9XL H15 H15 H  0 1 N N N 16.538 9.802  34.109 -1.125 -1.542 -2.225 H15 9XL 53 
9XL H16 H16 H  0 1 N N N 16.905 10.429 35.751 -1.897 -0.340 -3.287 H16 9XL 54 
9XL H17 H17 H  0 1 N N N 14.802 6.818  38.675 -5.523 -0.466 0.697  H17 9XL 55 
9XL H18 H18 H  0 1 N N N 12.342 10.551 34.062 -2.025 2.104  0.468  H18 9XL 56 
9XL H19 H19 H  0 1 N N N 13.416 9.124  33.868 -0.743 2.896  -0.479 H19 9XL 57 
9XL H20 H20 H  0 1 N N N 13.606 10.472 31.401 -3.718 3.527  -0.725 H20 9XL 58 
9XL H21 H21 H  0 1 N N N 16.890 12.807 35.873 0.185  0.361  0.847  H21 9XL 59 
9XL H22 H22 H  0 1 N N N 16.814 14.328 37.435 2.455  0.720  1.268  H22 9XL 60 
9XL H24 H24 H  0 1 N N N 13.023 5.500  41.586 -9.533 -0.983 3.020  H24 9XL 61 
9XL H25 H25 H  0 1 N N N 12.955 6.327  40.066 -9.604 -2.120 1.785  H25 9XL 62 
9XL H26 H26 H  0 1 N N N 11.658 11.676 31.997 -1.316 4.859  -1.795 H26 9XL 63 
9XL H27 H27 H  0 1 N N N 11.314 10.600 30.818 -2.439 4.007  -2.676 H27 9XL 64 
9XL H29 H29 H  0 1 N N N 11.531 7.160  31.468 -3.033 5.055  2.444  H29 9XL 65 
9XL H30 H30 H  0 1 N N N 17.040 14.387 34.116 0.112  -1.717 2.025  H30 9XL 66 
9XL H31 H31 H  0 1 N N N 16.975 16.434 36.530 1.808  -0.792 3.031  H31 9XL 67 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
9XL O33 C32 DOUB N N 1  
9XL C32 O34 SING N N 2  
9XL C32 C30 SING N N 3  
9XL N31 C30 SING N N 4  
9XL C30 C29 SING N N 5  
9XL C29 C28 SING N N 6  
9XL C28 N15 SING N N 7  
9XL O36 C35 SING N N 8  
9XL C16 N15 SING N N 9  
9XL C16 C17 SING N N 10 
9XL N15 C14 SING N N 11 
9XL C35 C13 SING N N 12 
9XL C35 C37 SING N N 13 
9XL C17 C18 TRIP N N 14 
9XL O38 C37 SING N N 15 
9XL C13 C14 SING N N 16 
9XL C13 C12 SING N N 17 
9XL C20 C21 DOUB Y N 18 
9XL C20 C19 SING Y N 19 
9XL C18 C19 SING N N 20 
9XL C21 C22 SING Y N 21 
9XL C37 C11 SING N N 22 
9XL C19 C27 DOUB Y N 23 
9XL C11 C12 SING N N 24 
9XL C11 N10 SING N N 25 
9XL C22 C23 DOUB Y N 26 
9XL N05 C04 DOUB Y N 27 
9XL N05 C06 SING Y N 28 
9XL C27 C23 SING Y N 29 
9XL N10 C06 SING Y N 30 
9XL N10 C09 SING Y N 31 
9XL C04 N03 SING Y N 32 
9XL C06 C07 DOUB Y N 33 
9XL C23 C24 SING N N 34 
9XL C09 C08 DOUB Y N 35 
9XL N03 C02 DOUB Y N 36 
9XL C07 C08 SING Y N 37 
9XL C07 C02 SING Y N 38 
9XL C24 N25 SING N N 39 
9XL C24 O26 DOUB N N 40 
9XL C02 CL1 SING N N 41 
9XL C13 H1  SING N N 42 
9XL C20 H2  SING N N 43 
9XL C21 H3  SING N N 44 
9XL C22 H4  SING N N 45 
9XL C28 H5  SING N N 46 
9XL C28 H6  SING N N 47 
9XL C04 H7  SING N N 48 
9XL C08 H8  SING N N 49 
9XL C09 H9  SING N N 50 
9XL C11 H10 SING N N 51 
9XL C12 H11 SING N N 52 
9XL C12 H12 SING N N 53 
9XL C14 H13 SING N N 54 
9XL C14 H14 SING N N 55 
9XL C16 H15 SING N N 56 
9XL C16 H16 SING N N 57 
9XL C27 H17 SING N N 58 
9XL C29 H18 SING N N 59 
9XL C29 H19 SING N N 60 
9XL C30 H20 SING N N 61 
9XL C35 H21 SING N N 62 
9XL C37 H22 SING N N 63 
9XL N25 H24 SING N N 64 
9XL N25 H25 SING N N 65 
9XL N31 H26 SING N N 66 
9XL N31 H27 SING N N 67 
9XL O34 H29 SING N N 68 
9XL O36 H30 SING N N 69 
9XL O38 H31 SING N N 70 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
9XL SMILES           ACDLabs              12.01 "NC(=O)c1cccc(c1)C#CCN(CCC(N)C(=O)O)CC1CC(C(O)C1O)n1ccc2c1ncnc2Cl"                                                                                                                                                                            
9XL InChI            InChI                1.03  "InChI=1S/C26H29ClN6O5/c27-23-18-6-10-33(25(18)31-14-30-23)20-12-17(21(34)22(20)35)13-32(9-7-19(28)26(37)38)8-2-4-15-3-1-5-16(11-15)24(29)36/h1,3,5-6,10-11,14,17,19-22,34-35H,7-9,12-13,28H2,(H2,29,36)(H,37,38)/t17-,19+,20-,21-,22+/m1/s1" 
9XL InChIKey         InChI                1.03  JIYDUPLVTSNGNC-BLCKVISQSA-N                                                                                                                                                                                                                   
9XL SMILES_CANONICAL CACTVS               3.385 "N[C@@H](CCN(CC#Cc1cccc(c1)C(N)=O)C[C@H]2C[C@H]([C@H](O)[C@@H]2O)n3ccc4c(Cl)ncnc34)C(O)=O"                                                                                                                                                    
9XL SMILES           CACTVS               3.385 "N[CH](CCN(CC#Cc1cccc(c1)C(N)=O)C[CH]2C[CH]([CH](O)[CH]2O)n3ccc4c(Cl)ncnc34)C(O)=O"                                                                                                                                                           
9XL SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(cc(c1)C(=O)N)C#CCN(CC[C@@H](C(=O)O)N)C[C@H]2C[C@H]([C@@H]([C@@H]2O)O)n3ccc4c3ncnc4Cl"                                                                                                                                                   
9XL SMILES           "OpenEye OEToolkits" 2.0.7 "c1cc(cc(c1)C(=O)N)C#CCN(CCC(C(=O)O)N)CC2CC(C(C2O)O)n3ccc4c3ncnc4Cl"                                                                                                                                                                          
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
9XL "SYSTEMATIC NAME" ACDLabs              12.01 "(2S)-2-amino-4-([3-(3-carbamoylphenyl)prop-2-yn-1-yl]{[(1R,2R,3S,4R)-4-(4-chloro-7H-pyrrolo[2,3-d]pyrimidin-7-yl)-2,3-dihydroxycyclopentyl]methyl}amino)butanoic acid"                     
9XL "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S})-4-[3-(3-aminocarbonylphenyl)prop-2-ynyl-[[(1~{R},2~{R},3~{S},4~{R})-4-(4-chloranylpyrrolo[2,3-d]pyrimidin-7-yl)-2,3-bis(oxidanyl)cyclopentyl]methyl]amino]-2-azanyl-butanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
9XL "Create component" 2021-11-01 RCSB 
9XL "Initial release"  2022-11-02 RCSB 
# 
