data_9JL
# 
_chem_comp.id                                    9JL 
_chem_comp.name                                  "(4S)-8-{4-[(dimethylamino)methyl]-2-methylphenyl}-5-{[(5-fluoro-2,3-dihydro-1-benzofuran-4-yl)methyl]amino}imidazo[1,2-c]pyrimidine-2-carbonitrile" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C26 H25 F N6 O" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         MRTX-2219 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2021-10-20 
_chem_comp.pdbx_modified_date                    2022-11-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        456.515 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     9JL 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7SI4 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
9JL C1  C1  C 0 1 Y N N -17.209 -23.889 26.790 -3.774 -1.293 -0.880 C1  9JL 1  
9JL C13 C2  C 0 1 Y N N -17.049 -25.282 28.787 -5.782 -1.175 0.420  C13 9JL 2  
9JL C14 C3  C 0 1 N N N -17.358 -25.565 30.258 -7.267 -1.397 0.543  C14 9JL 3  
9JL C15 C4  C 0 1 N N N -16.952 -24.895 32.543 -9.423 -0.442 -0.009 C15 9JL 4  
9JL C17 C5  C 0 1 Y N N -16.306 -26.211 28.060 -5.072 -0.654 1.487  C17 9JL 5  
9JL C19 C6  C 0 1 Y N N -16.455 -24.836 26.065 -3.053 -0.767 0.193  C19 9JL 6  
9JL N   N1  N 0 1 N N N -16.506 -24.724 31.150 -7.981 -0.188 0.111  N   9JL 7  
9JL C   C7  C 0 1 N N N -17.719 -22.612 26.142 -3.068 -1.646 -2.164 C   9JL 8  
9JL O   O1  O 0 1 N N N -10.075 -27.183 22.145 7.373  0.167  1.915  O   9JL 9  
9JL C12 C8  C 0 1 Y N N -17.499 -24.123 28.138 -5.133 -1.494 -0.760 C12 9JL 10 
9JL C16 C9  C 0 1 N N N -15.065 -25.060 31.083 -7.718 0.933  1.023  C16 9JL 11 
9JL C18 C10 C 0 1 Y N N -16.010 -25.989 26.724 -3.712 -0.448 1.380  C18 9JL 12 
9JL C1A C11 C 0 1 Y N N -16.082 -24.696 24.664 -1.593 -0.549 0.071  C1A 9JL 13 
9JL C1B C12 C 0 1 Y N N -14.749 -24.629 24.323 -0.705 -1.610 0.116  C1B 9JL 14 
9JL C1C C13 C 0 1 Y N N -15.206 -24.459 22.060 1.113  -0.192 -0.150 C1C 9JL 15 
9JL C1D C14 C 0 1 N N N -13.420 -24.249 20.389 3.338  -1.237 -0.187 C1D 9JL 16 
9JL C1E C15 C 0 1 Y N N -12.749 -25.606 20.383 4.779  -0.816 -0.323 C1E 9JL 17 
9JL C1F C16 C 0 1 Y N N -11.696 -25.873 21.258 5.514  -0.503 0.798  C1F 9JL 18 
9JL C1G C17 C 0 1 Y N N -11.067 -27.102 21.232 6.841  -0.108 0.692  C1G 9JL 19 
9JL C1H C18 C 0 1 Y N N -11.434 -28.124 20.360 7.424  -0.041 -0.571 C1H 9JL 20 
9JL C1I C19 C 0 1 Y N N -12.486 -27.879 19.476 6.688  -0.356 -1.695 C1I 9JL 21 
9JL C1K C20 C 0 1 N N N -11.085 -24.980 22.301 5.166  -0.497 2.274  C1K 9JL 22 
9JL C1L C21 C 0 1 N N N -10.005 -25.922 22.910 6.565  -0.447 2.932  C1L 9JL 23 
9JL C1M C22 C 0 1 Y N N -13.118 -26.631 19.502 5.364  -0.742 -1.577 C1M 9JL 24 
9JL C1N C23 C 0 1 Y N N -17.055 -24.649 23.610 -1.039 0.797  -0.106 C1N 9JL 25 
9JL C1O C24 C 0 1 Y N N -18.743 -24.597 22.300 -0.600 2.907  -0.356 C1O 9JL 26 
9JL C1P C25 C 0 1 N N N -20.108 -24.600 21.833 -0.786 4.321  -0.491 C1P 9JL 27 
9JL C1Q C26 C 0 1 Y N N -17.654 -24.493 21.496 0.597  2.253  -0.364 C1Q 9JL 28 
9JL F   F1  F 0 1 N N N -14.136 -26.435 18.635 4.646  -1.047 -2.680 F   9JL 29 
9JL N1  N2  N 0 1 Y N N -14.322 -24.511 23.019 0.604  -1.392 0.005  N1  9JL 30 
9JL N12 N3  N 0 1 N N N -14.830 -24.352 20.749 2.475  -0.054 -0.252 N12 9JL 31 
9JL N13 N4  N 0 1 Y N N -16.587 -24.525 22.331 0.327  0.923  -0.212 N13 9JL 32 
9JL N14 N5  N 0 1 Y N N -18.371 -24.692 23.611 -1.579 1.992  -0.194 N14 9JL 33 
9JL N15 N6  N 0 1 N N N -21.183 -24.602 21.459 -0.933 5.442  -0.597 N15 9JL 34 
9JL H1  H1  H 0 1 N N N -18.417 -25.340 30.454 -7.562 -2.238 -0.085 H1  9JL 35 
9JL H2  H2  H 0 1 N N N -17.163 -26.627 30.470 -7.517 -1.614 1.582  H2  9JL 36 
9JL H3  H3  H 0 1 N N N -16.328 -24.278 33.207 -9.818 -0.754 0.957  H3  9JL 37 
9JL H4  H4  H 0 1 N N N -18.003 -24.583 32.632 -9.927 0.469  -0.331 H4  9JL 38 
9JL H5  H5  H 0 1 N N N -16.858 -25.953 32.831 -9.593 -1.230 -0.743 H5  9JL 39 
9JL H6  H6  H 0 1 N N N -15.958 -27.112 28.542 -5.584 -0.406 2.405  H6  9JL 40 
9JL H8  H8  H 0 1 N N N -18.716 -22.791 25.713 -3.069 -0.783 -2.828 H8  9JL 41 
9JL H9  H9  H 0 1 N N N -17.783 -21.817 26.899 -2.040 -1.935 -1.945 H9  9JL 42 
9JL H10 H10 H 0 1 N N N -17.027 -22.304 25.345 -3.584 -2.477 -2.645 H10 9JL 43 
9JL H11 H11 H 0 1 N N N -18.080 -23.398 28.689 -5.693 -1.900 -1.590 H11 9JL 44 
9JL H12 H12 H 0 1 N N N -14.503 -24.403 31.763 -6.649 1.145  1.039  H12 9JL 45 
9JL H13 H13 H 0 1 N N N -14.919 -26.108 31.382 -8.258 1.815  0.679  H13 9JL 46 
9JL H14 H14 H 0 1 N N N -14.703 -24.918 30.054 -8.052 0.671  2.027  H14 9JL 47 
9JL H15 H15 H 0 1 N N N -15.426 -26.718 26.182 -3.159 -0.040 2.213  H15 9JL 48 
9JL H16 H16 H 0 1 N N N -14.010 -24.671 25.109 -1.075 -2.617 0.242  H16 9JL 49 
9JL H17 H17 H 0 1 N N N -12.911 -23.602 21.118 3.081  -1.919 -0.998 H17 9JL 50 
9JL H18 H18 H 0 1 N N N -13.339 -23.805 19.386 3.195  -1.739 0.769  H18 9JL 51 
9JL H19 H19 H 0 1 N N N -10.922 -29.075 20.368 8.457  0.259  -0.671 H19 9JL 52 
9JL H20 H20 H 0 1 N N N -12.807 -28.642 18.782 7.148  -0.301 -2.671 H20 9JL 53 
9JL H21 H21 H 0 1 N N N -10.631 -24.085 21.850 4.581  0.385  2.534  H21 9JL 54 
9JL H22 H22 H 0 1 N N N -10.218 -26.109 23.973 6.923  -1.452 3.156  H22 9JL 55 
9JL H23 H23 H 0 1 N N N -17.641 -24.404 20.420 1.573  2.701  -0.477 H23 9JL 56 
9JL H24 H24 H 0 1 N N N -15.278 -23.534 20.388 2.867  0.826  -0.367 H24 9JL 57 
9JL H7  H7  H 0 1 N N N -11.826 -24.675 23.055 4.637  -1.409 2.553  H7  9JL 58 
9JL H25 H25 H 0 1 N N N -9.007  -25.471 22.810 6.546  0.167  3.833  H25 9JL 59 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
9JL F   C1M SING N N 1  
9JL C1I C1M DOUB Y N 2  
9JL C1I C1H SING Y N 3  
9JL C1M C1E SING Y N 4  
9JL C1H C1G DOUB Y N 5  
9JL C1E C1D SING N N 6  
9JL C1E C1F DOUB Y N 7  
9JL C1D N12 SING N N 8  
9JL N12 C1C SING N N 9  
9JL C1G C1F SING Y N 10 
9JL C1G O   SING N N 11 
9JL C1F C1K SING N N 12 
9JL N15 C1P TRIP N N 13 
9JL C1Q C1O DOUB Y N 14 
9JL C1Q N13 SING Y N 15 
9JL C1P C1O SING N N 16 
9JL C1C N13 SING Y N 17 
9JL C1C N1  DOUB Y N 18 
9JL O   C1L SING N N 19 
9JL C1O N14 SING Y N 20 
9JL C1K C1L SING N N 21 
9JL N13 C1N SING Y N 22 
9JL N1  C1B SING Y N 23 
9JL C1N N14 DOUB Y N 24 
9JL C1N C1A SING Y N 25 
9JL C1B C1A DOUB Y N 26 
9JL C1A C19 SING N N 27 
9JL C19 C18 DOUB Y N 28 
9JL C19 C1  SING Y N 29 
9JL C   C1  SING N N 30 
9JL C18 C17 SING Y N 31 
9JL C1  C12 DOUB Y N 32 
9JL C17 C13 DOUB Y N 33 
9JL C12 C13 SING Y N 34 
9JL C13 C14 SING N N 35 
9JL C14 N   SING N N 36 
9JL C16 N   SING N N 37 
9JL N   C15 SING N N 38 
9JL C14 H1  SING N N 39 
9JL C14 H2  SING N N 40 
9JL C15 H3  SING N N 41 
9JL C15 H4  SING N N 42 
9JL C15 H5  SING N N 43 
9JL C17 H6  SING N N 44 
9JL C   H8  SING N N 45 
9JL C   H9  SING N N 46 
9JL C   H10 SING N N 47 
9JL C12 H11 SING N N 48 
9JL C16 H12 SING N N 49 
9JL C16 H13 SING N N 50 
9JL C16 H14 SING N N 51 
9JL C18 H15 SING N N 52 
9JL C1B H16 SING N N 53 
9JL C1D H17 SING N N 54 
9JL C1D H18 SING N N 55 
9JL C1H H19 SING N N 56 
9JL C1I H20 SING N N 57 
9JL C1K H21 SING N N 58 
9JL C1L H22 SING N N 59 
9JL C1Q H23 SING N N 60 
9JL N12 H24 SING N N 61 
9JL C1K H7  SING N N 62 
9JL C1L H25 SING N N 63 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
9JL SMILES           ACDLabs              12.01 "CN(C)Cc1ccc(c(C)c1)c1cnc(NCc2c(F)ccc3OCCc23)n2cc(C#N)nc12"                                                                                                                   
9JL InChI            InChI                1.03  "InChI=1S/C26H25FN6O/c1-16-10-17(14-32(2)3)4-5-19(16)22-13-30-26(33-15-18(11-28)31-25(22)33)29-12-21-20-8-9-34-24(20)7-6-23(21)27/h4-7,10,13,15H,8-9,12,14H2,1-3H3,(H,29,30)" 
9JL InChIKey         InChI                1.03  FLCIOLFIDGTRCI-UHFFFAOYSA-N                                                                                                                                                   
9JL SMILES_CANONICAL CACTVS               3.385 "CN(C)Cc1ccc(c(C)c1)c2cnc(NCc3c(F)ccc4OCCc34)n5cc(nc25)C#N"                                                                                                                   
9JL SMILES           CACTVS               3.385 "CN(C)Cc1ccc(c(C)c1)c2cnc(NCc3c(F)ccc4OCCc34)n5cc(nc25)C#N"                                                                                                                   
9JL SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1cc(ccc1c2cnc(n3c2nc(c3)C#N)NCc4c(ccc5c4CCO5)F)CN(C)C"                                                                                                                     
9JL SMILES           "OpenEye OEToolkits" 2.0.7 "Cc1cc(ccc1c2cnc(n3c2nc(c3)C#N)NCc4c(ccc5c4CCO5)F)CN(C)C"                                                                                                                     
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
9JL "SYSTEMATIC NAME" ACDLabs              12.01 "(4S)-8-{4-[(dimethylamino)methyl]-2-methylphenyl}-5-{[(5-fluoro-2,3-dihydro-1-benzofuran-4-yl)methyl]amino}imidazo[1,2-c]pyrimidine-2-carbonitrile" 
9JL "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "8-[4-[(dimethylamino)methyl]-2-methyl-phenyl]-5-[(5-fluoranyl-2,3-dihydro-1-benzofuran-4-yl)methylamino]imidazo[1,2-c]pyrimidine-2-carbonitrile"    
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
9JL "Create component" 2021-10-20 RCSB 
9JL "Initial release"  2022-11-09 RCSB 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      9JL 
_pdbx_chem_comp_synonyms.name         MRTX-2219 
_pdbx_chem_comp_synonyms.provenance   AUTHOR 
_pdbx_chem_comp_synonyms.type         "compound number" 
# 
