data_8YL
#

_chem_comp.id                                   8YL
_chem_comp.name                                 
;(2S,3R)-2-[(2S,3R)-1,3-bis(oxidanyl)-1-oxidanylidene-butan-2-yl]-4-[(3S,5S)-5-(dimethylcarbamoyl)pyrrolidin-3-yl]sulfan
yl-3-methyl-2,3-dihydro-1H-pyrrole-5-carboxylic acid
;

_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C17 H27 N3 O6 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "Meropenem, hydrolyzed form"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2017-11-08
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       401.478
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    8YL
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  Y
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       ?
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
8YL  CAA  C1   C  0  1  N  N  N  ?  ?  ?  -5.250   1.465  -2.396  CAA  8YL   1  
8YL  CAU  C2   C  0  1  N  N  R  ?  ?  ?  -5.277   0.830  -1.004  CAU  8YL   2  
8YL  OAJ  O1   O  0  1  N  N  N  ?  ?  ?  -5.317  -0.593  -1.130  OAJ  8YL   3  
8YL  CBA  C3   C  0  1  N  N  S  ?  ?  ?  -4.020   1.239  -0.233  CBA  8YL   4  
8YL  CAQ  C4   C  0  1  N  N  N  ?  ?  ?  -4.109   0.726   1.181  CAQ  8YL   5  
8YL  OAI  O2   O  0  1  N  N  N  ?  ?  ?  -4.941   1.312   2.057  OAI  8YL   6  
8YL  OAF  O3   O  0  1  N  N  N  ?  ?  ?  -3.432  -0.213   1.527  OAF  8YL   7  
8YL  CAZ  C5   C  0  1  N  N  S  ?  ?  ?  -2.787   0.643  -0.915  CAZ  8YL   8  
8YL  CAV  C6   C  0  1  N  N  R  ?  ?  ?  -1.501   1.178  -0.261  CAV  8YL   9  
8YL  CAB  C7   C  0  1  N  N  N  ?  ?  ?  -1.842   2.145   0.875  CAB  8YL  10  
8YL  NAN  N1   N  0  1  N  N  N  ?  ?  ?  -2.737  -0.810  -0.703  NAN  8YL  11  
8YL  CAS  C8   C  0  1  N  N  N  ?  ?  ?  -1.564  -1.135  -0.003  CAS  8YL  12  
8YL  CAP  C9   C  0  1  N  N  N  ?  ?  ?  -1.210  -2.455   0.363  CAP  8YL  13  
8YL  OAH  O4   O  0  1  N  N  N  ?  ?  ?  -0.226  -2.653   1.052  OAH  8YL  14  
8YL  OAE  O5   O  0  1  N  N  N  ?  ?  ?  -1.964  -3.496  -0.052  OAE  8YL  15  
8YL  CAT  C10  C  0  1  N  N  N  ?  ?  ?  -0.811  -0.052   0.283  CAT  8YL  16  
8YL  SAO  S1   S  0  1  N  N  N  ?  ?  ?   0.724  -0.069   1.148  SAO  8YL  17  
8YL  CG   C11  C  0  1  N  N  S  ?  ?  ?   1.834   0.487  -0.170  CG   8YL  18  
8YL  CB   C12  C  0  1  N  N  N  ?  ?  ?   3.244   0.810   0.390  CB   8YL  19  
8YL  CD   C13  C  0  1  N  N  N  ?  ?  ?   2.145  -0.665  -1.157  CD   8YL  20  
8YL  N    N2   N  0  1  N  N  N  ?  ?  ?   3.446  -0.306  -1.759  N    8YL  21  
8YL  CA   C14  C  0  1  N  N  S  ?  ?  ?   4.162   0.590  -0.831  CA   8YL  22  
8YL  C    C15  C  0  1  N  N  N  ?  ?  ?   5.453  -0.051  -0.392  C    8YL  23  
8YL  O    O6   O  0  1  N  N  N  ?  ?  ?   5.610  -1.247  -0.519  O    8YL  24  
8YL  NAY  N3   N  0  1  N  N  N  ?  ?  ?   6.434   0.704   0.141  NAY  8YL  25  
8YL  CAD  C16  C  0  1  N  N  N  ?  ?  ?   7.689   0.081   0.568  CAD  8YL  26  
8YL  CAC  C17  C  0  1  N  N  N  ?  ?  ?   6.244   2.149   0.294  CAC  8YL  27  
8YL  H1   H1   H  0  1  N  N  N  ?  ?  ?  -6.146   1.174  -2.945  H1   8YL  28  
8YL  H2   H2   H  0  1  N  N  N  ?  ?  ?  -5.220   2.550  -2.299  H2   8YL  29  
8YL  H3   H3   H  0  1  N  N  N  ?  ?  ?  -4.366   1.123  -2.934  H3   8YL  30  
8YL  H4   H4   H  0  1  N  N  N  ?  ?  ?  -6.161   1.172  -0.465  H4   8YL  31  
8YL  H5   H5   H  0  1  N  N  N  ?  ?  ?  -4.694  -0.948  -1.779  H5   8YL  32  
8YL  H6   H6   H  0  1  N  N  N  ?  ?  ?  -3.939   2.326  -0.221  H6   8YL  33  
8YL  H7   H7   H  0  1  N  N  N  ?  ?  ?  -4.964   0.948   2.952  H7   8YL  34  
8YL  H8   H8   H  0  1  N  N  N  ?  ?  ?  -2.795   0.871  -1.980  H8   8YL  35  
8YL  H9   H9   H  0  1  N  N  N  ?  ?  ?  -0.873   1.671  -1.004  H9   8YL  36  
8YL  H10  H10  H  0  1  N  N  N  ?  ?  ?  -2.311   1.596   1.691  H10  8YL  37  
8YL  H11  H11  H  0  1  N  N  N  ?  ?  ?  -0.929   2.621   1.234  H11  8YL  38  
8YL  H12  H12  H  0  1  N  N  N  ?  ?  ?  -2.529   2.908   0.508  H12  8YL  39  
8YL  H13  H13  H  0  1  N  N  N  ?  ?  ?  -3.408  -1.445  -1.000  H13  8YL  40  
8YL  H14  H14  H  0  1  N  N  N  ?  ?  ?  -1.644  -4.358   0.247  H14  8YL  41  
8YL  H15  H15  H  0  1  N  N  N  ?  ?  ?   1.415   1.347  -0.693  H15  8YL  42  
8YL  H16  H16  H  0  1  N  N  N  ?  ?  ?   3.296   1.845   0.730  H16  8YL  43  
8YL  H17  H17  H  0  1  N  N  N  ?  ?  ?   3.503   0.127   1.199  H17  8YL  44  
8YL  H18  H18  H  0  1  N  N  N  ?  ?  ?   2.222  -1.612  -0.623  H18  8YL  45  
8YL  H19  H19  H  0  1  N  N  N  ?  ?  ?   1.373  -0.726  -1.925  H19  8YL  46  
8YL  H20  H20  H  0  1  N  N  N  ?  ?  ?   3.320   0.132  -2.659  H20  8YL  47  
8YL  H22  H22  H  0  1  N  N  N  ?  ?  ?   4.365   1.543  -1.318  H22  8YL  48  
8YL  H23  H23  H  0  1  N  N  N  ?  ?  ?   8.394   0.077  -0.264  H23  8YL  49  
8YL  H24  H24  H  0  1  N  N  N  ?  ?  ?   8.111   0.645   1.399  H24  8YL  50  
8YL  H25  H25  H  0  1  N  N  N  ?  ?  ?   7.496  -0.944   0.885  H25  8YL  51  
8YL  H26  H26  H  0  1  N  N  N  ?  ?  ?   5.257   2.427  -0.075  H26  8YL  52  
8YL  H27  H27  H  0  1  N  N  N  ?  ?  ?   6.326   2.416   1.348  H27  8YL  53  
8YL  H28  H28  H  0  1  N  N  N  ?  ?  ?   7.008   2.678  -0.275  H28  8YL  54  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
8YL  CAC  NAY  SING  N  N   1  
8YL  CAD  NAY  SING  N  N   2  
8YL  NAY  C    SING  N  N   3  
8YL  C    CA   SING  N  N   4  
8YL  C    O    DOUB  N  N   5  
8YL  CA   N    SING  N  N   6  
8YL  CA   CB   SING  N  N   7  
8YL  N    CD   SING  N  N   8  
8YL  CD   CG   SING  N  N   9  
8YL  CB   CG   SING  N  N  10  
8YL  CG   SAO  SING  N  N  11  
8YL  OAH  CAP  DOUB  N  N  12  
8YL  SAO  CAT  SING  N  N  13  
8YL  OAE  CAP  SING  N  N  14  
8YL  CAP  CAS  SING  N  N  15  
8YL  CAT  CAS  DOUB  N  N  16  
8YL  CAT  CAV  SING  N  N  17  
8YL  CAS  NAN  SING  N  N  18  
8YL  CAV  CAB  SING  N  N  19  
8YL  CAV  CAZ  SING  N  N  20  
8YL  NAN  CAZ  SING  N  N  21  
8YL  CAZ  CBA  SING  N  N  22  
8YL  OAF  CAQ  DOUB  N  N  23  
8YL  CAQ  OAI  SING  N  N  24  
8YL  CAQ  CBA  SING  N  N  25  
8YL  CBA  CAU  SING  N  N  26  
8YL  CAU  OAJ  SING  N  N  27  
8YL  CAU  CAA  SING  N  N  28  
8YL  CAA  H1   SING  N  N  29  
8YL  CAA  H2   SING  N  N  30  
8YL  CAA  H3   SING  N  N  31  
8YL  CAU  H4   SING  N  N  32  
8YL  OAJ  H5   SING  N  N  33  
8YL  CBA  H6   SING  N  N  34  
8YL  OAI  H7   SING  N  N  35  
8YL  CAZ  H8   SING  N  N  36  
8YL  CAV  H9   SING  N  N  37  
8YL  CAB  H10  SING  N  N  38  
8YL  CAB  H11  SING  N  N  39  
8YL  CAB  H12  SING  N  N  40  
8YL  NAN  H13  SING  N  N  41  
8YL  OAE  H14  SING  N  N  42  
8YL  CG   H15  SING  N  N  43  
8YL  CB   H16  SING  N  N  44  
8YL  CB   H17  SING  N  N  45  
8YL  CD   H18  SING  N  N  46  
8YL  CD   H19  SING  N  N  47  
8YL  N    H20  SING  N  N  48  
8YL  CA   H22  SING  N  N  49  
8YL  CAD  H23  SING  N  N  50  
8YL  CAD  H24  SING  N  N  51  
8YL  CAD  H25  SING  N  N  52  
8YL  CAC  H26  SING  N  N  53  
8YL  CAC  H27  SING  N  N  54  
8YL  CAC  H28  SING  N  N  55  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
8YL  InChI             InChI                 1.03   "InChI=1S/C17H27N3O6S/c1-7-12(11(8(2)21)16(23)24)19-13(17(25)26)14(7)27-9-5-10(18-6-9)15(22)20(3)4/h7-12,18-19,21H,5-6H2,1-4H3,(H,23,24)(H,25,26)/t7-,8-,9+,10+,11-,12-/m1/s1"  
8YL  InChIKey          InChI                 1.03   ILVWWUFTACAPIZ-PQTSNVLCSA-N  
8YL  SMILES_CANONICAL  CACTVS                3.385  "C[C@@H](O)[C@H]([C@@H]1NC(=C(S[C@@H]2CN[C@@H](C2)C(=O)N(C)C)[C@@H]1C)C(O)=O)C(O)=O"  
8YL  SMILES            CACTVS                3.385  "C[CH](O)[CH]([CH]1NC(=C(S[CH]2CN[CH](C2)C(=O)N(C)C)[CH]1C)C(O)=O)C(O)=O"  
8YL  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "C[C@@H]1[C@@H](NC(=C1S[C@H]2C[C@H](NC2)C(=O)N(C)C)C(=O)O)[C@@H]([C@@H](C)O)C(=O)O"  
8YL  SMILES            "OpenEye OEToolkits"  2.0.6  "CC1C(NC(=C1SC2CC(NC2)C(=O)N(C)C)C(=O)O)C(C(C)O)C(=O)O"  
#
_pdbx_chem_comp_identifier.comp_id          8YL
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.6
_pdbx_chem_comp_identifier.identifier       "(2~{S},3~{R})-2-[(2~{S},3~{R})-1,3-bis(oxidanyl)-1-oxidanylidene-butan-2-yl]-4-[(3~{S},5~{S})-5-(dimethylcarbamoyl)pyrrolidin-3-yl]sulfanyl-3-methyl-2,3-dihydro-1~{H}-pyrrole-5-carboxylic acid"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
8YL  "Create component"  2017-11-08  PDBJ  
8YL  "Initial release"   2017-12-13  RCSB  
8YL  "Modify synonyms"   2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     8YL
_pdbx_chem_comp_synonyms.name        "Meropenem, hydrolyzed form"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
