data_7XL
# 
_chem_comp.id                                    7XL 
_chem_comp.name                                  "[[(2R,3S,4R,5R)-5-(4-azanyl-2-oxidanylidene-pyrimidin-1-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-(2-hydroxyethyl)phosphinic acid" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C11 H19 N3 O11 P2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-02-06 
_chem_comp.pdbx_modified_date                    2017-09-08 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        431.230 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     7XL 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5X3D 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
7XL O1  OAG O 0 1 N N N 0.241  25.933 14.550 -3.385 0.375  -1.598 O1  7XL 1  
7XL C1  CAC C 0 1 N N N -0.230 26.991 14.105 -3.997 1.082  -0.815 C1  7XL 2  
7XL N1  NAD N 0 1 N N N -0.688 27.912 14.974 -4.656 2.146  -1.270 N1  7XL 3  
7XL C2  CAE C 0 1 N N N -1.250 29.069 14.563 -5.331 2.931  -0.440 C2  7XL 4  
7XL N2  NAF N 0 1 N N N -1.685 29.940 15.480 -6.009 4.027  -0.921 N2  7XL 5  
7XL C3  CAA C 0 1 N N N -1.373 29.363 13.188 -5.349 2.635  0.939  C3  7XL 6  
7XL C4  CAB C 0 1 N N N -0.884 28.434 12.271 -4.674 1.550  1.386  C4  7XL 7  
7XL N3  NAH N 0 1 N N N -0.322 27.224 12.757 -4.000 0.770  0.495  N3  7XL 8  
7XL C5  C1* C 0 1 N N R 0.197  26.194 11.831 -3.265 -0.407 0.965  C5  7XL 9  
7XL O2  O4* O 0 1 N N N 1.080  26.839 10.928 -1.905 -0.377 0.481  O2  7XL 10 
7XL C6  C2* C 0 1 N N R -0.835 25.595 10.950 -3.872 -1.694 0.366  C6  7XL 11 
7XL O3  O2* O 0 1 N N N -1.501 24.517 11.638 -4.751 -2.317 1.304  O3  7XL 12 
7XL C7  C3* C 0 1 N N S 0.002  25.083 9.788  -2.646 -2.595 0.092  C7  7XL 13 
7XL O4  O3* O 0 1 N N N 0.545  23.778 10.042 -2.731 -3.801 0.853  O4  7XL 14 
7XL C8  C4* C 0 1 N N R 1.171  26.082 9.705  -1.442 -1.743 0.561  C8  7XL 15 
7XL C9  C5* C 0 1 N N N 1.026  27.075 8.562  -0.245 -1.956 -0.368 C9  7XL 16 
7XL O5  O5* O 0 1 N N N -0.267 27.649 8.662  0.888  -1.253 0.146  O5  7XL 17 
7XL P1  PAR P 0 1 N N N -0.956 28.319 7.303  2.325  -1.256 -0.580 P1  7XL 18 
7XL O6  OAS O 0 1 N N N 0.174  29.239 6.726  2.171  -0.803 -1.980 O6  7XL 19 
7XL O7  OAT O 0 1 N N N -2.236 28.876 7.719  2.932  -2.747 -0.562 O7  7XL 20 
7XL O8  OAU O 0 1 N N N -1.042 27.046 6.323  3.322  -0.262 0.200  O8  7XL 21 
7XL P2  PAV P 0 1 N N N -2.319 26.102 5.927  4.690  0.488  -0.197 P2  7XL 22 
7XL O9  OAX O 0 1 N N N -3.504 27.049 5.385  4.446  1.381  -1.351 O9  7XL 23 
7XL O10 OAY O 0 1 N N N -2.787 25.215 7.022  5.806  -0.604 -0.589 O10 7XL 24 
7XL C10 CAW C 0 1 N N N -1.494 25.202 4.574  5.276  1.474  1.221  C10 7XL 25 
7XL C11 CAZ C 0 1 N N N -2.320 24.100 3.990  6.506  2.284  0.805  C11 7XL 26 
7XL O11 OBA O 0 1 N N N -2.400 23.002 4.929  6.965  3.056  1.916  O11 7XL 27 
7XL H1  H1  H 0 1 N N N -1.592 29.730 16.453 -5.994 4.227  -1.870 H1  7XL 28 
7XL H2  H2  H 0 1 N N N -2.104 30.801 15.192 -6.501 4.599  -0.312 H2  7XL 29 
7XL H3  H3  H 0 1 N N N -1.833 30.282 12.856 -5.893 3.265  1.628  H3  7XL 30 
7XL H4  H4  H 0 1 N N N -0.932 28.631 11.210 -4.676 1.300  2.437  H4  7XL 31 
7XL H5  H5  H 0 1 N N N 0.716  25.405 12.395 -3.279 -0.451 2.054  H5  7XL 32 
7XL H6  H6  H 0 1 N N N -1.548 26.357 10.604 -4.399 -1.472 -0.562 H6  7XL 33 
7XL H7  H7  H 0 1 N N N -2.014 24.868 12.356 -5.160 -3.131 0.979  H7  7XL 34 
7XL H8  H8  H 0 1 N N N -0.582 25.105 8.856  -2.567 -2.820 -0.971 H8  7XL 35 
7XL H9  H9  H 0 1 N N N -0.162 23.146 10.097 -3.503 -4.345 0.643  H9  7XL 36 
7XL H10 H10 H 0 1 N N N 2.127  25.544 9.629  -1.176 -1.994 1.587  H10 7XL 37 
7XL H11 H11 H 0 1 N N N 1.134  26.557 7.598  -0.017 -3.020 -0.428 H11 7XL 38 
7XL H12 H12 H 0 1 N N N 1.793  27.859 8.645  -0.486 -1.579 -1.363 H12 7XL 39 
7XL H13 H13 H 0 1 N N N -2.234 29.816 7.579  3.059  -3.110 0.325  H13 7XL 40 
7XL H14 H14 H 0 1 N N N -3.707 25.380 7.193  6.017  -1.224 0.123  H14 7XL 41 
7XL H15 H15 H 0 1 N N N -0.562 24.767 4.964  4.486  2.153  1.543  H15 7XL 42 
7XL H16 H16 H 0 1 N N N -1.257 25.919 3.774  5.540  0.808  2.042  H16 7XL 43 
7XL H17 H17 H 0 1 N N N -3.332 24.475 3.778  7.296  1.605  0.483  H17 7XL 44 
7XL H18 H18 H 0 1 N N N -1.855 23.750 3.056  6.242  2.950  -0.016 H18 7XL 45 
7XL H19 H19 H 0 1 N N N -2.925 22.303 4.556  7.744  3.596  1.724  H19 7XL 46 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
7XL C11 C10 SING N N 1  
7XL C11 O11 SING N N 2  
7XL C10 P2  SING N N 3  
7XL O9  P2  DOUB N N 4  
7XL P2  O8  SING N N 5  
7XL P2  O10 SING N N 6  
7XL O8  P1  SING N N 7  
7XL O6  P1  DOUB N N 8  
7XL P1  O7  SING N N 9  
7XL P1  O5  SING N N 10 
7XL C9  O5  SING N N 11 
7XL C9  C8  SING N N 12 
7XL C8  C7  SING N N 13 
7XL C8  O2  SING N N 14 
7XL C7  O4  SING N N 15 
7XL C7  C6  SING N N 16 
7XL O2  C5  SING N N 17 
7XL C6  O3  SING N N 18 
7XL C6  C5  SING N N 19 
7XL C5  N3  SING N N 20 
7XL C4  N3  SING N N 21 
7XL C4  C3  DOUB N N 22 
7XL N3  C1  SING N N 23 
7XL C3  C2  SING N N 24 
7XL C1  O1  DOUB N N 25 
7XL C1  N1  SING N N 26 
7XL C2  N1  DOUB N N 27 
7XL C2  N2  SING N N 28 
7XL N2  H1  SING N N 29 
7XL N2  H2  SING N N 30 
7XL C3  H3  SING N N 31 
7XL C4  H4  SING N N 32 
7XL C5  H5  SING N N 33 
7XL C6  H6  SING N N 34 
7XL O3  H7  SING N N 35 
7XL C7  H8  SING N N 36 
7XL O4  H9  SING N N 37 
7XL C8  H10 SING N N 38 
7XL C9  H11 SING N N 39 
7XL C9  H12 SING N N 40 
7XL O7  H13 SING N N 41 
7XL O10 H14 SING N N 42 
7XL C10 H15 SING N N 43 
7XL C10 H16 SING N N 44 
7XL C11 H17 SING N N 45 
7XL C11 H18 SING N N 46 
7XL O11 H19 SING N N 47 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
7XL InChI            InChI                1.03  "InChI=1S/C11H19N3O11P2/c12-7-1-2-14(11(18)13-7)10-9(17)8(16)6(24-10)5-23-27(21,22)25-26(19,20)4-3-15/h1-2,6,8-10,15-17H,3-5H2,(H,19,20)(H,21,22)(H2,12,13,18)/t6-,8-,9-,10-/m1/s1" 
7XL InChIKey         InChI                1.03  ODFOOQGQRDVSPW-PEBGCTIMSA-N                                                                                                                                                         
7XL SMILES_CANONICAL CACTVS               3.385 "NC1=NC(=O)N(C=C1)[C@@H]2O[C@H](CO[P](O)(=O)O[P](O)(=O)CCO)[C@@H](O)[C@H]2O"                                                                                                        
7XL SMILES           CACTVS               3.385 "NC1=NC(=O)N(C=C1)[CH]2O[CH](CO[P](O)(=O)O[P](O)(=O)CCO)[CH](O)[CH]2O"                                                                                                              
7XL SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "C1=CN(C(=O)N=C1N)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)OP(=O)(CCO)O)O)O"                                                                                                          
7XL SMILES           "OpenEye OEToolkits" 2.0.6 "C1=CN(C(=O)N=C1N)C2C(C(C(O2)COP(=O)(O)OP(=O)(CCO)O)O)O"                                                                                                                            
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
7XL "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "[[(2~{R},3~{S},4~{R},5~{R})-5-(4-azanyl-2-oxidanylidene-pyrimidin-1-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-(2-hydroxyethyl)phosphinic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
7XL "Create component" 2017-02-06 PDBJ 
7XL "Initial release"  2017-09-13 RCSB 
# 
