data_6KL
#

_chem_comp.id                                   6KL
_chem_comp.name                                 "methyl 4,5-bisacetamido-3,4,5-trideoxy-D-glycero-alpha-D-galacto-non-2-ulopyranosidonic acid"
_chem_comp.type                                 D-saccharide
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C14 H24 N2 O9"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        
;methyl 4,5-bis(acetylamino)-3,4,5-trideoxy-D-glycero-alpha-D-galacto-non-2-ulopyranosidonic acid; methyl
4,5-bisacetamido-3,4,5-trideoxy-D-glycero-alpha-D-galacto-non-2-ulosidonic acid; methyl
4,5-bisacetamido-3,4,5-trideoxy-D-glycero-D-galacto-non-2-ulosidonic acid; methyl
4,5-bisacetamido-3,4,5-trideoxy-D-glycero-galacto-non-2-ulosidonic acid
;

_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2016-04-22
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       364.348
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    6KL
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5JIL
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  6KL  "methyl 4,5-bis(acetylamino)-3,4,5-trideoxy-D-glycero-alpha-D-galacto-non-2-ulopyranosidonic acid"  PDB  ?  
2  6KL  "methyl 4,5-bisacetamido-3,4,5-trideoxy-D-glycero-alpha-D-galacto-non-2-ulosidonic acid"            PDB  ?  
3  6KL  "methyl 4,5-bisacetamido-3,4,5-trideoxy-D-glycero-D-galacto-non-2-ulosidonic acid"                  PDB  ?  
4  6KL  "methyl 4,5-bisacetamido-3,4,5-trideoxy-D-glycero-galacto-non-2-ulosidonic acid"                    PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
6KL  C1    C1   C  0  1  N  N  N  -25.814  -25.348   2.528  -0.124   2.370   1.148  C1    6KL   1  
6KL  O1B   O1   O  0  1  N  N  N  -25.045  -26.293   2.810   0.259   1.443   2.041  O1B   6KL   2  
6KL  O2    O2   O  0  1  N  N  N  -25.144  -24.572   4.721  -0.499   3.203  -1.069  O2    6KL   3  
6KL  C2    C2   C  0  1  N  N  R  -25.740  -24.142   3.452  -0.149   2.036  -0.321  C2    6KL   4  
6KL  C3    C3   C  0  1  N  N  N  -24.809  -23.085   2.845   1.235   1.546  -0.757  C3    6KL   5  
6KL  C4    C4   C  0  1  N  N  S  -25.494  -22.018   1.993   1.577   0.263   0.006  C4    6KL   6  
6KL  O1A   O3   O  0  1  N  N  N  -26.617  -25.300   1.567  -0.454   3.470   1.524  O1A   6KL   7  
6KL  C11   C11  C  0  1  N  N  N  -28.621  -18.232   1.748   1.878  -4.169   0.849  C11   6KL   8  
6KL  C10   C10  C  0  1  N  N  N  -27.960  -19.276   2.656   1.592  -2.928   0.044  C10   6KL   9  
6KL  O10   O10  O  0  1  N  N  N  -27.985  -19.107   3.875   2.111  -2.777  -1.043  O10   6KL  10  
6KL  N5    N5   N  0  1  N  N  N  -27.403  -20.347   2.026   0.761  -1.985   0.530  N5    6KL  11  
6KL  C5    C5   C  0  1  N  N  R  -26.737  -21.455   2.749   0.483  -0.778  -0.253  C5    6KL  12  
6KL  N4    N4   N  0  1  N  N  N  -24.431  -21.018   1.787   2.866  -0.255  -0.459  N4    6KL  13  
6KL  CA4   CA4  C  0  1  N  N  N  -23.811  -20.757   0.608   4.011   0.206   0.081  CA4   6KL  14  
6KL  OA4   OA4  O  0  1  N  N  N  -24.114  -21.249  -0.480   3.975   1.050   0.952  OA4   6KL  15  
6KL  CM4   CM4  C  0  1  N  N  N  -22.684  -19.712   0.667   5.338  -0.326  -0.398  CM4   6KL  16  
6KL  CM2   CM2  C  0  1  N  N  N  -25.973  -25.332   5.625  -0.668   2.967  -2.468  CM2   6KL  17  
6KL  O6    O6   O  0  1  N  N  N  -27.079  -23.639   3.746  -1.114   1.010  -0.561  O6    6KL  18  
6KL  C6    C6   C  0  1  N  N  R  -27.700  -22.649   2.909  -0.871  -0.199   0.163  C6    6KL  19  
6KL  C7    C7   C  0  1  N  N  R  -29.048  -22.286   3.566  -1.977  -1.210  -0.148  C7    6KL  20  
6KL  O7    O7   O  0  1  N  N  N  -28.792  -21.741   4.863  -1.913  -1.576  -1.528  O7    6KL  21  
6KL  C8    C8   C  0  1  N  N  R  -29.942  -23.541   3.700  -3.340  -0.584   0.152  C8    6KL  22  
6KL  O8    O8   O  0  1  N  N  N  -30.051  -24.198   2.438  -3.403  -0.219   1.531  O8    6KL  23  
6KL  C9    C9   C  0  1  N  N  N  -31.351  -23.210   4.123  -4.445  -1.595  -0.160  C9    6KL  24  
6KL  O9    O9   O  0  1  N  N  N  -31.220  -22.750   5.464  -5.721  -0.974   0.009  O9    6KL  25  
6KL  HO1B  H1   H  0  0  N  N  N  -25.156  -26.992   2.176   0.258   1.704   2.972  HO1B  6KL  26  
6KL  H32   H2   H  0  1  N  N  N  -24.074  -23.604   2.212   1.229   1.344  -1.828  H32   6KL  27  
6KL  H31   H3   H  0  1  N  N  N  -24.289  -22.577   3.670   1.978   2.312  -0.535  H31   6KL  28  
6KL  H4    H4   H  0  1  N  N  N  -25.812  -22.451   1.033   1.631   0.476   1.073  H4    6KL  29  
6KL  H111  H5   H  0  0  N  N  N  -29.051  -17.429   2.364   2.566  -4.809   0.298  H111  6KL  30  
6KL  H113  H6   H  0  0  N  N  N  -27.868  -17.809   1.067   2.327  -3.888   1.802  H113  6KL  31  
6KL  H112  H7   H  0  0  N  N  N  -29.419  -18.710   1.160   0.947  -4.707   1.030  H112  6KL  32  
6KL  HN5   H8   H  0  1  N  N  N  -27.446  -20.387   1.028   0.346  -2.105   1.399  HN5   6KL  33  
6KL  H5    H9   H  0  1  N  N  N  -26.421  -21.113   3.746   0.463  -1.029  -1.314  H5    6KL  34  
6KL  H10   H10  H  0  1  N  N  N  -24.142  -20.487   2.583   2.895  -0.929  -1.156  H10   6KL  35  
6KL  H11   H11  H  0  1  N  N  N  -22.285  -19.545  -0.344   5.171  -1.070  -1.176  H11   6KL  36  
6KL  H12   H12  H  0  1  N  N  N  -23.081  -18.767   1.065   5.934   0.493  -0.799  H12   6KL  37  
6KL  H13   H13  H  0  1  N  N  N  -21.880  -20.077   1.323   5.867  -0.786   0.437  H13   6KL  38  
6KL  H14   H14  H  0  1  N  N  N  -25.397  -25.583   6.528  -1.391   2.166  -2.617  H14   6KL  39  
6KL  H15   H15  H  0  1  N  N  N  -26.853  -24.734   5.906  -1.029   3.876  -2.949  H15   6KL  40  
6KL  H16   H16  H  0  1  N  N  N  -26.301  -26.258   5.130   0.288   2.680  -2.906  H16   6KL  41  
6KL  H6    H17  H  0  1  N  N  N  -27.900  -23.072   1.913  -0.863   0.013   1.232  H6    6KL  42  
6KL  H7    H18  H  0  1  N  N  N  -29.564  -21.548   2.935  -1.841  -2.098   0.469  H7    6KL  43  
6KL  HO7   H19  H  0  1  N  Y  N  -28.501  -20.841   4.777  -2.026  -0.833  -2.137  HO7   6KL  44  
6KL  H8    H20  H  0  1  N  N  N  -29.492  -24.216   4.443  -3.476   0.304  -0.466  H8    6KL  45  
6KL  HO8   H21  H  0  1  N  Y  N  -30.601  -24.967   2.527  -3.290  -0.961   2.141  HO8   6KL  46  
6KL  H92   H22  H  0  1  N  N  N  -31.775  -22.424   3.482  -4.342  -1.941  -1.188  H92   6KL  47  
6KL  H91   H23  H  0  1  N  N  N  -31.991  -24.104   4.079  -4.362  -2.444   0.519  H91   6KL  48  
6KL  HO9   H24  H  0  1  N  Y  N  -32.076  -22.519   5.805  -6.470  -1.558  -0.172  HO9   6KL  49  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
6KL  OA4  CA4   DOUB  N  N   1  
6KL  CA4  CM4   SING  N  N   2  
6KL  CA4  N4    SING  N  N   3  
6KL  O1A  C1    DOUB  N  N   4  
6KL  C11  C10   SING  N  N   5  
6KL  N4   C4    SING  N  N   6  
6KL  C4   C5    SING  N  N   7  
6KL  C4   C3    SING  N  N   8  
6KL  N5   C10   SING  N  N   9  
6KL  N5   C5    SING  N  N  10  
6KL  O8   C8    SING  N  N  11  
6KL  C1   O1B   SING  N  N  12  
6KL  C1   C2    SING  N  N  13  
6KL  C10  O10   DOUB  N  N  14  
6KL  C5   C6    SING  N  N  15  
6KL  C3   C2    SING  N  N  16  
6KL  C6   C7    SING  N  N  17  
6KL  C6   O6    SING  N  N  18  
6KL  C2   O6    SING  N  N  19  
6KL  C2   O2    SING  N  N  20  
6KL  C7   C8    SING  N  N  21  
6KL  C7   O7    SING  N  N  22  
6KL  C8   C9    SING  N  N  23  
6KL  C9   O9    SING  N  N  24  
6KL  O2   CM2   SING  N  N  25  
6KL  O1B  HO1B  SING  N  N  26  
6KL  C3   H32   SING  N  N  27  
6KL  C3   H31   SING  N  N  28  
6KL  C4   H4    SING  N  N  29  
6KL  C11  H111  SING  N  N  30  
6KL  C11  H113  SING  N  N  31  
6KL  C11  H112  SING  N  N  32  
6KL  N5   HN5   SING  N  N  33  
6KL  C5   H5    SING  N  N  34  
6KL  N4   H10   SING  N  N  35  
6KL  CM4  H11   SING  N  N  36  
6KL  CM4  H12   SING  N  N  37  
6KL  CM4  H13   SING  N  N  38  
6KL  CM2  H14   SING  N  N  39  
6KL  CM2  H15   SING  N  N  40  
6KL  CM2  H16   SING  N  N  41  
6KL  C6   H6    SING  N  N  42  
6KL  C7   H7    SING  N  N  43  
6KL  O7   HO7   SING  N  N  44  
6KL  C8   H8    SING  N  N  45  
6KL  O8   HO8   SING  N  N  46  
6KL  C9   H92   SING  N  N  47  
6KL  C9   H91   SING  N  N  48  
6KL  O9   HO9   SING  N  N  49  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
6KL  SMILES            ACDLabs               12.01  "C(O)(C1(OC)OC(C(C(C1)NC(C)=O)NC(C)=O)C(C(CO)O)O)=O"  
6KL  InChI             InChI                 1.03   "InChI=1S/C14H24N2O9/c1-6(18)15-8-4-14(24-3,13(22)23)25-12(10(8)16-7(2)19)11(21)9(20)5-17/h8-12,17,20-21H,4-5H2,1-3H3,(H,15,18)(H,16,19)(H,22,23)/t8-,9+,10+,11+,12+,14+/m0/s1"  
6KL  InChIKey          InChI                 1.03   YEXCUFMMPWRNRI-KXEMTNKZSA-N  
6KL  SMILES_CANONICAL  CACTVS                3.385  "CO[C@@]1(C[C@H](NC(C)=O)[C@@H](NC(C)=O)[C@@H](O1)[C@H](O)[C@H](O)CO)C(O)=O"  
6KL  SMILES            CACTVS                3.385  "CO[C]1(C[CH](NC(C)=O)[CH](NC(C)=O)[CH](O1)[CH](O)[CH](O)CO)C(O)=O"  
6KL  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.4  "CC(=O)N[C@H]1C[C@@](O[C@H]([C@@H]1NC(=O)C)[C@@H]([C@@H](CO)O)O)(C(=O)O)OC"  
6KL  SMILES            "OpenEye OEToolkits"  2.0.4  "CC(=O)NC1CC(OC(C1NC(=O)C)C(C(CO)O)O)(C(=O)O)OC"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
6KL  "SYSTEMATIC NAME"  ACDLabs               12.01  "methyl 4,5-bis(acetylamino)-3,4,5-trideoxy-D-glycero-alpha-D-galacto-non-2-ulopyranosidonic acid"  
6KL  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.4  
;(2~{R},4~{S},5~{R},6~{R})-4,5-diacetamido-2-methoxy-6-[(1~{R},2~{R})-1,2,3-tris(oxidanyl)propyl]oxane-2-carboxylic
acid
;
  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
6KL  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
6KL  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
6KL  "CARBOHYDRATE ANOMER"                  alpha     PDB  ?  
6KL  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  ketose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
6KL  "Create component"          2016-04-22  EBI   
6KL  "Initial release"           2016-05-11  RCSB  
6KL  "Other modification"        2020-07-03  RCSB  
6KL  "Modify name"               2020-07-17  RCSB  
6KL  "Modify synonyms"           2020-07-17  RCSB  
6KL  "Modify internal type"      2020-07-17  RCSB  
6KL  "Modify linking type"       2020-07-17  RCSB  
6KL  "Modify atom id"            2020-07-17  RCSB  
6KL  "Modify component atom id"  2020-07-17  RCSB  
6KL  "Modify leaving atom flag"  2020-07-17  RCSB  
##
