data_0KL
# 
_chem_comp.id                                    0KL 
_chem_comp.name                                  
;5-(5-aminopent-1-yn-1-yl)-2'-deoxyuridine 5'-(tetrahydrogen triphosphate)
;
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C14 H22 N3 O14 P3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2012-02-03 
_chem_comp.pdbx_modified_date                    2012-05-11 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        549.257 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     0KL 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4DFJ 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
0KL O3G   O3G O 0 1 N N N 18.038 -14.879 -14.403 7.022   -3.305 -2.106 O3G DTT 1  
0KL PG    PG  P 0 1 N N N 17.004 -13.997 -13.742 6.800   -2.842 -0.580 PG  DTT 2  
0KL O2G   O2G O 0 1 N N N 17.581 -12.744 -13.127 6.540   -4.137 0.341  O2G DTT 3  
0KL O1G   O1G O 0 1 N N N 15.750 -13.767 -14.550 8.006   -2.131 -0.101 O1G DTT 4  
0KL O3B   O3B O 0 1 N N N 16.484 -14.840 -12.469 5.528   -1.859 -0.496 O3B DTT 5  
0KL PB    PB  P 0 1 N N N 16.856 -16.390 -12.226 5.027   -0.768 0.576  PB  DTT 6  
0KL O1B   O1B O 0 1 N N N 15.701 -17.020 -11.487 4.417   -1.520 1.862  O1B DTT 7  
0KL O2B   O2B O 0 1 N N N 17.374 -17.028 -13.494 6.170   0.075  0.994  O2B DTT 8  
0KL O3A   O3A O 0 1 N N N 18.037 -16.242 -11.146 3.893   0.159  -0.092 O3A DTT 9  
0KL PA    PA  P 0 1 N N N 19.583 -16.534 -11.476 3.296   1.615  0.247  PA  DTT 10 
0KL O1A   O1A O 0 1 N N N 19.785 -16.634 -12.971 3.158   1.763  1.713  O1A DTT 11 
0KL O2A   O2A O 0 1 N N N 20.389 -15.543 -10.673 4.293   2.748  -0.315 O2A DTT 12 
0KL "O5'" O5* O 0 1 N N N 19.714 -17.977 -10.777 1.852   1.779  -0.447 O5* DTT 13 
0KL "C5'" C5* C 0 1 N N N 19.522 -19.183 -11.513 1.018   2.922  -0.248 C5* DTT 14 
0KL "C4'" C4* C 0 1 N N R 18.753 -20.165 -10.636 -0.275  2.755  -1.049 C4* DTT 15 
0KL "C3'" C3* C 0 1 N N S 17.426 -19.592 -10.163 -1.138  4.032  -0.950 C3* DTT 16 
0KL "O3'" O3* O 0 1 N N N 16.353 -19.796 -11.087 -0.954  4.852  -2.106 O3* DTT 17 
0KL "C2'" C2* C 0 1 N N N 17.171 -20.326 -8.861  -2.588  3.502  -0.886 C2* DTT 18 
0KL "O4'" O4* O 0 1 N N N 19.473 -20.461 -9.433  -1.092  1.712  -0.473 O4* DTT 19 
0KL "C1'" C1* C 0 1 N N R 18.558 -20.686 -8.353  -2.429  1.967  -0.955 C1* DTT 20 
0KL N1    N1  N 0 1 N N N 18.856 -19.771 -7.249  -3.416  1.313  -0.091 N1  DTT 21 
0KL C2    C2  C 0 1 N N N 18.531 -20.130 -5.919  -3.350  1.497  1.237  C2  DTT 22 
0KL O2    O2  O 0 1 N N N 18.010 -21.244 -5.683  -2.472  2.204  1.693  O2  DTT 23 
0KL N3    N3  N 0 1 N N N 18.779 -19.299 -4.897  -4.228  0.923  2.078  N3  DTT 24 
0KL C6    C6  C 0 1 N N N 19.401 -18.579 -7.523  -4.385  0.535  -0.654 C6  DTT 25 
0KL C5    C5  C 0 1 N N N 19.671 -17.699 -6.494  -5.306  -0.076 0.148  C5  DTT 26 
0KL C4    C4  C 0 1 N N N 19.335 -18.102 -5.112  -5.214  0.134  1.600  C4  DTT 27 
0KL O4    O4  O 0 1 N N N 19.572 -17.319 -4.167  -6.011  -0.389 2.356  O4  DTT 28 
0KL C29   C29 C 0 1 N N N 20.209 -16.558 -6.724  -6.336  -0.899 -0.411 C29 DTT 29 
0KL C30   C30 C 0 1 N N N 20.691 -15.498 -6.901  -7.181  -1.574 -0.869 C30 DTT 30 
0KL C31   C31 C 0 1 N N N 21.306 -14.194 -7.177  -8.240  -2.420 -1.443 C31 DTT 31 
0KL C32   C32 C 0 1 N N N 21.098 -13.267 -5.991  -9.120  -2.969 -0.319 C32 DTT 32 
0KL C33   C33 C 0 1 N N N 21.728 -13.835 -4.723  -10.221 -3.848 -0.916 C33 DTT 33 
0KL N34   N34 N 0 1 N N N 20.765 -14.640 -3.991  -11.066 -4.376 0.164  N34 DTT 34 
0KL H1    H1  H 0 1 N N N 17.903 -15.781 -14.136 7.773   -3.901 -2.232 H1  DTT 35 
0KL H2    H2  H 0 1 N N N 17.040 -11.998 -13.360 5.764   -4.653 0.084  H2  DTT 36 
0KL H3    H3  H 0 1 N N N 15.419 -17.802 -11.947 3.662   -2.091 1.662  H3  DTT 37 
0KL H4    H4  H 0 1 N N N 20.971 -15.065 -11.252 4.430   2.712  -1.271 H4  DTT 38 
0KL H5    H5  H 0 1 N N N 18.948 -18.973 -12.427 0.780   3.017  0.811  H5  DTT 39 
0KL H6    H6  H 0 1 N N N 20.498 -19.612 -11.784 1.541   3.816  -0.585 H6  DTT 40 
0KL H7    H7  H 0 1 N N N 18.565 -21.087 -11.207 -0.049  2.530  -2.091 H7  DTT 41 
0KL H8    H8  H 0 1 N N N 17.552 -18.519 -9.954  -0.895  4.588  -0.044 H8  DTT 42 
0KL H9    H9  H 0 1 N N N 15.556 -19.417 -10.736 -1.473  5.668  -2.096 H9  DTT 43 
0KL H10   H10 H 0 1 N N N 16.650 -19.676 -8.143  -3.061  3.796  0.050  H10 DTT 44 
0KL H11   H11 H 0 1 N N N 16.573 -21.232 -9.036  -3.164  3.865  -1.737 H11 DTT 45 
0KL H12   H12 H 0 1 N N N 18.580 -21.733 -8.016  -2.535  1.620  -1.983 H12 DTT 46 
0KL H13   H13 H 0 1 N N N 18.546 -19.577 -3.965  -4.153  1.076  3.033  H13 DTT 47 
0KL H14   H14 H 0 1 N N N 19.628 -18.307 -8.543  -4.424  0.403  -1.726 H14 DTT 48 
0KL H15   H15 H 0 1 N N N 22.384 -14.328 -7.352  -8.849  -1.826 -2.125 H15 DTT 49 
0KL H16   H16 H 0 1 N N N 20.842 -13.753 -8.071  -7.787  -3.248 -1.988 H16 DTT 50 
0KL H17   H17 H 0 1 N N N 21.558 -12.293 -6.213  -8.510  -3.563 0.363  H17 DTT 51 
0KL H18   H18 H 0 1 N N N 20.019 -13.134 -5.826  -9.572  -2.141 0.226  H18 DTT 52 
0KL H19   H19 H 0 1 N N N 22.590 -14.462 -4.997  -10.830 -3.255 -1.597 H19 DTT 53 
0KL H20   H20 H 0 1 N N N 22.066 -13.006 -4.084  -9.768  -4.677 -1.461 H20 DTT 54 
0KL H21   H21 H 0 1 N N N 21.194 -15.004 -3.164  -11.801 -4.960 -0.205 H21 DTT 55 
0KL H22   H22 H 0 1 N N N 19.981 -14.073 -3.738  -10.513 -4.876 0.844  H22 DTT 56 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
0KL O1G   PG    DOUB N N 1  
0KL O3G   PG    SING N N 2  
0KL PG    O2G   SING N N 3  
0KL PG    O3B   SING N N 4  
0KL O2B   PB    DOUB N N 5  
0KL O1A   PA    DOUB N N 6  
0KL O3B   PB    SING N N 7  
0KL PB    O1B   SING N N 8  
0KL PB    O3A   SING N N 9  
0KL "C5'" "O5'" SING N N 10 
0KL "C5'" "C4'" SING N N 11 
0KL PA    O3A   SING N N 12 
0KL PA    "O5'" SING N N 13 
0KL PA    O2A   SING N N 14 
0KL "O3'" "C3'" SING N N 15 
0KL "C4'" "C3'" SING N N 16 
0KL "C4'" "O4'" SING N N 17 
0KL "C3'" "C2'" SING N N 18 
0KL "O4'" "C1'" SING N N 19 
0KL "C2'" "C1'" SING N N 20 
0KL "C1'" N1    SING N N 21 
0KL C6    N1    SING N N 22 
0KL C6    C5    DOUB N N 23 
0KL N1    C2    SING N N 24 
0KL C31   C30   SING N N 25 
0KL C31   C32   SING N N 26 
0KL C30   C29   TRIP N N 27 
0KL C29   C5    SING N N 28 
0KL C5    C4    SING N N 29 
0KL C32   C33   SING N N 30 
0KL C2    O2    DOUB N N 31 
0KL C2    N3    SING N N 32 
0KL C4    N3    SING N N 33 
0KL C4    O4    DOUB N N 34 
0KL C33   N34   SING N N 35 
0KL O3G   H1    SING N N 36 
0KL O2G   H2    SING N N 37 
0KL O1B   H3    SING N N 38 
0KL O2A   H4    SING N N 39 
0KL "C5'" H5    SING N N 40 
0KL "C5'" H6    SING N N 41 
0KL "C4'" H7    SING N N 42 
0KL "C3'" H8    SING N N 43 
0KL "O3'" H9    SING N N 44 
0KL "C2'" H10   SING N N 45 
0KL "C2'" H11   SING N N 46 
0KL "C1'" H12   SING N N 47 
0KL N3    H13   SING N N 48 
0KL C6    H14   SING N N 49 
0KL C31   H15   SING N N 50 
0KL C31   H16   SING N N 51 
0KL C32   H17   SING N N 52 
0KL C32   H18   SING N N 53 
0KL C33   H19   SING N N 54 
0KL C33   H20   SING N N 55 
0KL N34   H21   SING N N 56 
0KL N34   H22   SING N N 57 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
0KL SMILES           ACDLabs              12.01 "O=P(O)(O)OP(=O)(O)OP(=O)(O)OCC2OC(N1C(=O)NC(=O)C(C#CCCCN)=C1)CC2O" 
0KL InChI            InChI                1.03  
"InChI=1S/C14H22N3O14P3/c15-5-3-1-2-4-9-7-17(14(20)16-13(9)19)12-6-10(18)11(29-12)8-28-33(24,25)31-34(26,27)30-32(21,22)23/h7,10-12,18H,1,3,5-6,8,15H2,(H,24,25)(H,26,27)(H,16,19,20)(H2,21,22,23)/t10-,11+,12+/m0/s1" 
0KL InChIKey         InChI                1.03  WENDCSLWIXFOST-QJPTWQEYSA-N 
0KL SMILES_CANONICAL CACTVS               3.370 "NCCCC#CC1=CN([C@H]2C[C@H](O)[C@@H](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)O2)C(=O)NC1=O" 
0KL SMILES           CACTVS               3.370 "NCCCC#CC1=CN([CH]2C[CH](O)[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)O2)C(=O)NC1=O" 
0KL SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C1[C@@H]([C@H](O[C@H]1N2C=C(C(=O)NC2=O)C#CCCCN)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O" 
0KL SMILES           "OpenEye OEToolkits" 1.7.6 "C1C(C(OC1N2C=C(C(=O)NC2=O)C#CCCCN)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
0KL "SYSTEMATIC NAME" ACDLabs              12.01 
;5-(5-aminopent-1-yn-1-yl)-2'-deoxyuridine 5'-(tetrahydrogen triphosphate)
;
0KL "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[[(2R,3S,5R)-5-[5-(5-azanylpent-1-ynyl)-2,4-bis(oxidanylidene)pyrimidin-1-yl]-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
0KL "Create component" 2012-02-03 RCSB 
# 
