data_ZDK
# 
_chem_comp.id                                    ZDK 
_chem_comp.name                                  "1-{[3-(diphenylmethyl)-1,2,4-oxadiazol-5-yl]methyl}-4-(methoxymethyl)piperidine" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C23 H27 N3 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-03-08 
_chem_comp.pdbx_modified_date                    2023-09-29 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        377.479 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     ZDK 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8GEV 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
ZDK C01 C1  C 0 1 Y N N 15.874 -8.694 -14.349 6.248  -1.962 -0.381 C01 ZDK 1  
ZDK C02 C2  C 0 1 Y N N 14.541 -8.869 -13.968 5.348  -1.494 -1.321 C02 ZDK 2  
ZDK C03 C3  C 0 1 Y N N 13.562 -7.958 -14.340 4.204  -0.834 -0.914 C03 ZDK 3  
ZDK C04 C4  C 0 1 Y N N 13.903 -6.877 -15.116 3.958  -0.642 0.432  C04 ZDK 4  
ZDK C05 C5  C 0 1 Y N N 15.223 -6.689 -15.495 4.857  -1.111 1.372  C05 ZDK 5  
ZDK C06 C6  C 0 1 Y N N 16.186 -7.608 -15.135 5.999  -1.776 0.966  C06 ZDK 6  
ZDK C07 C7  C 0 1 N N N 12.796 -5.893 -15.496 2.711  0.078  0.876  C07 ZDK 7  
ZDK C08 C8  C 0 1 Y N N 12.499 -5.833 -17.028 2.786  1.521  0.448  C08 ZDK 8  
ZDK C09 C9  C 0 1 Y N N 11.822 -4.733 -17.559 2.906  2.518  1.399  C09 ZDK 9  
ZDK C10 C10 C 0 1 Y N N 11.601 -4.678 -18.927 2.974  3.842  1.007  C10 ZDK 10 
ZDK C11 C11 C 0 1 Y N N 12.043 -5.699 -19.738 2.921  4.169  -0.335 C11 ZDK 11 
ZDK C12 C12 C 0 1 Y N N 12.727 -6.782 -19.224 2.802  3.172  -1.286 C12 ZDK 12 
ZDK C13 C13 C 0 1 Y N N 12.945 -6.832 -17.856 2.740  1.848  -0.894 C13 ZDK 13 
ZDK C14 C14 C 0 1 Y N N 13.264 -4.425 -15.098 1.506  -0.571 0.246  C14 ZDK 14 
ZDK C15 C15 C 0 1 Y N N 14.415 -2.556 -15.050 -0.338 -1.571 -0.036 C15 ZDK 15 
ZDK C16 C16 C 0 1 N N N 15.539 -1.504 -15.279 -1.648 -2.285 0.176  C16 ZDK 16 
ZDK C17 C17 C 0 1 N N N 15.455 -0.518 -13.306 -2.912 -0.606 -1.025 C17 ZDK 17 
ZDK C18 C18 C 0 1 N N N 16.297 0.125  -12.177 -3.948 0.509  -0.864 C18 ZDK 18 
ZDK C19 C19 C 0 1 N N N 17.104 -0.944 -11.453 -5.276 -0.098 -0.403 C19 ZDK 19 
ZDK C20 C20 C 0 1 N N N 17.765 -1.802 -12.517 -5.054 -0.857 0.908  C20 ZDK 20 
ZDK C21 C21 C 0 1 N N N 16.785 -2.225 -13.624 -3.986 -1.931 0.696  C21 ZDK 21 
ZDK C22 C22 C 0 1 N N N 18.155 -0.262 -10.576 -6.299 1.018  -0.181 C22 ZDK 22 
ZDK C23 C23 C 0 1 N N N 19.267 -0.404 -8.468  -8.601 1.406  0.363  C23 ZDK 23 
ZDK N01 N1  N 0 1 Y N N 12.594 -3.624 -14.284 1.273  -0.688 -1.027 N01 ZDK 24 
ZDK N02 N2  N 0 1 Y N N 14.378 -3.826 -15.581 0.476  -1.140 0.898  N02 ZDK 25 
ZDK N03 N3  N 0 1 N N N 16.196 -1.178 -14.169 -2.735 -1.300 0.257  N03 ZDK 26 
ZDK O01 O1  O 0 1 Y N N 13.291 -2.415 -14.207 0.218  -1.258 -1.210 O01 ZDK 27 
ZDK O02 O2  O 0 1 N N N 18.408 -1.037 -9.415  -7.569 0.444  0.135  O02 ZDK 28 
ZDK H01 H1  H 0 1 N N N 16.637 -9.391 -14.036 7.142  -2.477 -0.699 H01 ZDK 29 
ZDK H02 H2  H 0 1 N N N 14.268 -9.728 -13.374 5.541  -1.644 -2.373 H02 ZDK 30 
ZDK H05 H3  H 0 1 N N N 12.540 -8.098 -14.022 3.502  -0.468 -1.649 H05 ZDK 31 
ZDK H03 H4  H 0 1 N N N 15.498 -5.820 -16.074 4.663  -0.965 2.425  H03 ZDK 32 
ZDK H04 H5  H 0 1 N N N 17.202 -7.473 -15.475 6.701  -2.142 1.700  H04 ZDK 33 
ZDK H11 H6  H 0 1 N N N 11.872 -6.138 -14.951 2.627  0.024  1.961  H11 ZDK 34 
ZDK H07 H7  H 0 1 N N N 11.476 -3.938 -16.915 2.946  2.262  2.447  H07 ZDK 35 
ZDK H08 H8  H 0 1 N N N 11.082 -3.834 -19.356 3.067  4.621  1.749  H08 ZDK 36 
ZDK H09 H9  H 0 1 N N N 11.850 -5.651 -20.800 2.970  5.203  -0.641 H09 ZDK 37 
ZDK H10 H10 H 0 1 N N N 13.083 -7.570 -19.871 2.761  3.428  -2.334 H10 ZDK 38 
ZDK H06 H11 H 0 1 N N N 13.476 -7.673 -17.434 2.646  1.069  -1.636 H06 ZDK 39 
ZDK H13 H12 H 0 1 N N N 16.259 -1.916 -16.001 -1.832 -2.962 -0.659 H13 ZDK 40 
ZDK H12 H13 H 0 1 N N N 15.084 -0.593 -15.694 -1.605 -2.856 1.103  H12 ZDK 41 
ZDK H15 H14 H 0 1 N N N 14.914 0.277  -13.840 -3.256 -1.315 -1.778 H15 ZDK 42 
ZDK H14 H15 H 0 1 N N N 14.732 -1.214 -12.855 -1.961 -0.175 -1.339 H14 ZDK 43 
ZDK H16 H16 H 0 1 N N N 16.983 0.867  -12.612 -3.599 1.226  -0.121 H16 ZDK 44 
ZDK H17 H17 H 0 1 N N N 15.626 0.622  -11.461 -4.091 1.014  -1.819 H17 ZDK 45 
ZDK H   H18 H 0 1 N N N 16.439 -1.560 -10.830 -5.646 -0.785 -1.164 H   ZDK 46 
ZDK H19 H19 H 0 1 N N N 18.170 -2.707 -12.040 -4.722 -0.161 1.679  H19 ZDK 47 
ZDK H18 H20 H 0 1 N N N 18.586 -1.229 -12.973 -5.987 -1.326 1.220  H18 ZDK 48 
ZDK H21 H21 H 0 1 N N N 16.017 -2.883 -13.191 -3.815 -2.464 1.631  H21 ZDK 49 
ZDK H20 H22 H 0 1 N N N 17.338 -2.771 -14.403 -4.324 -2.634 -0.065 H20 ZDK 50 
ZDK H23 H23 H 0 1 N N N 19.088 -0.151 -11.148 -5.971 1.653  0.642  H23 ZDK 51 
ZDK H22 H24 H 0 1 N N N 17.788 0.731  -10.276 -6.386 1.616  -1.088 H22 ZDK 52 
ZDK H25 H25 H 0 1 N N N 19.411 -1.067 -7.602  -8.321 2.049  1.197  H25 ZDK 53 
ZDK H26 H26 H 0 1 N N N 20.240 -0.196 -8.937  -8.736 2.012  -0.533 H26 ZDK 54 
ZDK H24 H27 H 0 1 N N N 18.812 0.540  -8.134  -9.532 0.891  0.597  H24 ZDK 55 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
ZDK C11 C12 DOUB Y N 1  
ZDK C11 C10 SING Y N 2  
ZDK C12 C13 SING Y N 3  
ZDK C10 C09 DOUB Y N 4  
ZDK C13 C08 DOUB Y N 5  
ZDK C09 C08 SING Y N 6  
ZDK C08 C07 SING N N 7  
ZDK N02 C14 SING Y N 8  
ZDK N02 C15 DOUB Y N 9  
ZDK C07 C04 SING N N 10 
ZDK C07 C14 SING N N 11 
ZDK C05 C06 DOUB Y N 12 
ZDK C05 C04 SING Y N 13 
ZDK C16 C15 SING N N 14 
ZDK C16 N03 SING N N 15 
ZDK C06 C01 SING Y N 16 
ZDK C04 C03 DOUB Y N 17 
ZDK C14 N01 DOUB Y N 18 
ZDK C15 O01 SING Y N 19 
ZDK C01 C02 DOUB Y N 20 
ZDK C03 C02 SING Y N 21 
ZDK N01 O01 SING Y N 22 
ZDK N03 C21 SING N N 23 
ZDK N03 C17 SING N N 24 
ZDK C21 C20 SING N N 25 
ZDK C17 C18 SING N N 26 
ZDK C20 C19 SING N N 27 
ZDK C18 C19 SING N N 28 
ZDK C19 C22 SING N N 29 
ZDK C22 O02 SING N N 30 
ZDK O02 C23 SING N N 31 
ZDK C01 H01 SING N N 32 
ZDK C02 H02 SING N N 33 
ZDK C03 H05 SING N N 34 
ZDK C05 H03 SING N N 35 
ZDK C06 H04 SING N N 36 
ZDK C07 H11 SING N N 37 
ZDK C09 H07 SING N N 38 
ZDK C10 H08 SING N N 39 
ZDK C11 H09 SING N N 40 
ZDK C12 H10 SING N N 41 
ZDK C13 H06 SING N N 42 
ZDK C16 H13 SING N N 43 
ZDK C16 H12 SING N N 44 
ZDK C17 H15 SING N N 45 
ZDK C17 H14 SING N N 46 
ZDK C18 H16 SING N N 47 
ZDK C18 H17 SING N N 48 
ZDK C19 H   SING N N 49 
ZDK C20 H19 SING N N 50 
ZDK C20 H18 SING N N 51 
ZDK C21 H21 SING N N 52 
ZDK C21 H20 SING N N 53 
ZDK C22 H23 SING N N 54 
ZDK C22 H22 SING N N 55 
ZDK C23 H25 SING N N 56 
ZDK C23 H26 SING N N 57 
ZDK C23 H24 SING N N 58 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
ZDK SMILES           ACDLabs              12.01 "COCC1CCN(CC1)Cc1nc(no1)C(c1ccccc1)c1ccccc1"                                                                                           
ZDK InChI            InChI                1.06  "InChI=1S/C23H27N3O2/c1-27-17-18-12-14-26(15-13-18)16-21-24-23(25-28-21)22(19-8-4-2-5-9-19)20-10-6-3-7-11-20/h2-11,18,22H,12-17H2,1H3" 
ZDK InChIKey         InChI                1.06  XYPQCOBQQQTCFN-UHFFFAOYSA-N                                                                                                            
ZDK SMILES_CANONICAL CACTVS               3.385 "COCC1CCN(CC1)Cc2onc(n2)C(c3ccccc3)c4ccccc4"                                                                                           
ZDK SMILES           CACTVS               3.385 "COCC1CCN(CC1)Cc2onc(n2)C(c3ccccc3)c4ccccc4"                                                                                           
ZDK SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "COCC1CCN(CC1)Cc2nc(no2)C(c3ccccc3)c4ccccc4"                                                                                           
ZDK SMILES           "OpenEye OEToolkits" 2.0.7 "COCC1CCN(CC1)Cc2nc(no2)C(c3ccccc3)c4ccccc4"                                                                                           
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
ZDK "SYSTEMATIC NAME" ACDLabs              12.01 "1-{[3-(diphenylmethyl)-1,2,4-oxadiazol-5-yl]methyl}-4-(methoxymethyl)piperidine" 
ZDK "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "3-(diphenylmethyl)-5-[[4-(methoxymethyl)piperidin-1-yl]methyl]-1,2,4-oxadiazole" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
ZDK "Create component" 2023-03-08 RCSB 
ZDK "Initial release"  2023-10-04 RCSB 
# 
