data_YSK
# 
_chem_comp.id                                    YSK 
_chem_comp.name                                  "3-[3-fluoranyl-4-(methylsulfonylmethyl)phenyl]-7-[(1~{S})-1-(5-methyl-1,2,4-oxadiazol-3-yl)ethyl]-1~{H}-indole-2-carboxylic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C22 H20 F N3 O5 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-06-20 
_chem_comp.pdbx_modified_date                    2024-07-05 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        457.475 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YSK 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8PGB 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YSK C10  C1  C 0 1 Y N N N N N -21.657 -14.097 11.056 -1.256 1.853  -1.276 C10  YSK 1  
YSK C11  C2  C 0 1 Y N N N N N -21.945 -12.723 10.987 -1.134 0.512  -0.901 C11  YSK 2  
YSK C12  C3  C 0 1 Y N N N N N -22.491 -12.077 12.090 -2.283 -0.291 -0.780 C12  YSK 3  
YSK C14  C4  C 0 1 Y N N N N N -22.283 -10.587 10.521 -0.508 -1.594 -0.278 C14  YSK 4  
YSK C15  C5  C 0 1 N N N N N N -22.410 -9.251  9.837  0.274  -2.772 0.108  C15  YSK 5  
YSK C18  C6  C 0 1 Y N N N N N -21.814 -11.763 9.969  0.010  -0.346 -0.572 C18  YSK 6  
YSK C19  C7  C 0 1 Y N N N N N -21.254 -11.925 8.570  1.437  0.046  -0.559 C19  YSK 7  
YSK C20  C8  C 0 1 Y N N N N N -20.423 -10.940 8.062  2.330  -0.527 -1.466 C20  YSK 8  
YSK C21  C9  C 0 1 Y N N N N N -19.886 -11.071 6.799  3.659  -0.159 -1.449 C21  YSK 9  
YSK C22  C10 C 0 1 Y N N N N N -20.156 -12.178 6.021  4.109  0.779  -0.536 C22  YSK 10 
YSK C23  C11 C 0 1 N N N N N N -19.583 -12.313 4.605  5.564  1.172  -0.521 C23  YSK 11 
YSK C25  C12 C 0 1 N N N N N N -20.841 -9.764  3.784  8.165  0.721  0.465  C25  YSK 12 
YSK C01  C13 C 0 1 N N N N N N -28.098 -13.415 15.362 -7.600 0.124  3.164  C01  YSK 13 
YSK C02  C14 C 0 1 Y N N N N N -26.885 -12.691 14.779 -6.878 0.308  1.854  C02  YSK 14 
YSK C04  C15 C 0 1 Y N N N N N -24.851 -12.025 14.402 -5.688 0.026  0.127  C04  YSK 15 
YSK C05  C16 C 0 1 N N S N N N -23.333 -11.942 14.460 -4.777 -0.575 -0.913 C05  YSK 16 
YSK C06  C17 C 0 1 N N N N N N -22.748 -12.372 15.793 -5.499 -0.619 -2.260 C06  YSK 17 
YSK C07  C18 C 0 1 Y N N N N N -22.763 -12.756 13.276 -3.533 0.268  -1.037 C07  YSK 18 
YSK C08  C19 C 0 1 Y N N N N N -22.477 -14.114 13.330 -3.630 1.591  -1.405 C08  YSK 19 
YSK C09  C20 C 0 1 Y N N N N N -21.922 -14.785 12.236 -2.492 2.379  -1.522 C09  YSK 20 
YSK C28  C21 C 0 1 Y N N N N N -20.988 -13.157 6.547  3.229  1.353  0.367  C28  YSK 21 
YSK C30  C22 C 0 1 Y N N N N N -21.519 -13.043 7.821  1.894  0.995  0.356  C30  YSK 22 
YSK F29  F1  F 0 1 N N N N N N -21.269 -14.258 5.830  3.675  2.267  1.256  F29  YSK 23 
YSK N03  N1  N 0 1 Y N N N N N -25.621 -12.894 15.146 -6.111 -0.572 1.255  N03  YSK 24 
YSK N13  N2  N 0 1 Y N N N N N -22.655 -10.781 11.783 -1.882 -1.551 -0.404 N13  YSK 25 
YSK N31  N3  N 0 1 Y N N N N N -25.627 -11.286 13.571 -6.216 1.213  0.093  N31  YSK 26 
YSK O16  O1  O 0 1 N N N N N N -22.744 -9.261  8.613  1.485  -2.697 0.189  O16  YSK 27 
YSK O17  O2  O 0 1 N N N N N N -22.362 -8.180  10.496 -0.349 -3.939 0.372  O17  YSK 28 
YSK O26  O3  O 0 1 N N N N N N -22.028 -12.152 3.517  6.011  0.299  1.927  O26  YSK 29 
YSK O27  O4  O 0 1 N N N N N N -20.185 -11.648 2.046  6.448  -1.241 0.069  O27  YSK 30 
YSK O32  O5  O 0 1 Y N N N N N -26.878 -11.743 13.854 -6.900 1.395  1.078  O32  YSK 31 
YSK S24  S1  S 0 1 N N N N N N -20.714 -11.520 3.392  6.475  0.076  0.602  S24  YSK 32 
YSK H101 H1  H 0 0 N N N N N N -21.236 -14.612 10.205 -0.376 2.473  -1.365 H101 YSK 33 
YSK H201 H2  H 0 0 N N N N N N -20.195 -10.068 8.657  1.981  -1.260 -2.179 H201 YSK 34 
YSK H211 H3  H 0 0 N N N N N N -19.243 -10.294 6.412  4.350  -0.603 -2.150 H211 YSK 35 
YSK H231 H4  H 0 0 N N N N N N -19.472 -13.379 4.357  5.975  1.085  -1.526 H231 YSK 36 
YSK H232 H5  H 0 0 N N N N N N -18.600 -11.822 4.561  5.657  2.203  -0.178 H232 YSK 37 
YSK H252 H6  H 0 0 N N N N N N -21.241 -9.643  4.802  8.499  0.647  -0.569 H252 YSK 38 
YSK H253 H7  H 0 0 N N N N N N -19.844 -9.302  3.724  8.182  1.765  0.779  H253 YSK 39 
YSK H251 H8  H 0 0 N N N N N N -21.515 -9.276  3.065  8.828  0.139  1.104  H251 YSK 40 
YSK H012 H9  H 0 0 N N N N N N -29.016 -13.031 14.893 -6.958 0.450  3.982  H012 YSK 41 
YSK H013 H10 H 0 0 N N N N N N -28.010 -14.494 15.166 -8.514 0.718  3.161  H013 YSK 42 
YSK H011 H11 H 0 0 N N N N N N -28.141 -13.242 16.447 -7.851 -0.928 3.296  H011 YSK 43 
YSK H051 H12 H 0 0 N N N N N N -23.052 -10.891 14.298 -4.502 -1.586 -0.614 H051 YSK 44 
YSK H062 H13 H 0 0 N N N N N N -23.185 -11.764 16.599 -6.399 -1.228 -2.170 H062 YSK 45 
YSK H063 H14 H 0 0 N N N N N N -22.978 -13.433 15.969 -5.774 0.393  -2.559 H063 YSK 46 
YSK H061 H15 H 0 0 N N N N N N -21.657 -12.230 15.777 -4.840 -1.053 -3.012 H061 YSK 47 
YSK H081 H16 H 0 0 N N N N N N -22.688 -14.663 14.236 -4.600 2.021  -1.604 H081 YSK 48 
YSK H091 H17 H 0 0 N N N N N N -21.699 -15.839 12.307 -2.586 3.416  -1.808 H091 YSK 49 
YSK H301 H18 H 0 0 N N N N N N -22.139 -13.831 8.223  1.208  1.443  1.060  H301 YSK 50 
YSK H131 H19 H 0 0 N N N N N N -23.001 -10.076 12.402 -2.477 -2.301 -0.251 H131 YSK 51 
YSK H1   H20 H 0 1 N N N N N N -22.605 -7.452  9.936  0.250  -4.657 0.618  H1   YSK 52 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YSK O27 S24  DOUB N N 1  
YSK S24 O26  DOUB N N 2  
YSK S24 C25  SING N N 3  
YSK S24 C23  SING N N 4  
YSK C23 C22  SING N N 5  
YSK F29 C28  SING N N 6  
YSK C22 C28  DOUB Y N 7  
YSK C22 C21  SING Y N 8  
YSK C28 C30  SING Y N 9  
YSK C21 C20  DOUB Y N 10 
YSK C30 C19  DOUB Y N 11 
YSK C20 C19  SING Y N 12 
YSK C19 C18  SING N N 13 
YSK O16 C15  DOUB N N 14 
YSK C15 O17  SING N N 15 
YSK C15 C14  SING N N 16 
YSK C18 C14  DOUB Y N 17 
YSK C18 C11  SING Y N 18 
YSK C14 N13  SING Y N 19 
YSK C11 C10  DOUB Y N 20 
YSK C11 C12  SING Y N 21 
YSK C10 C09  SING Y N 22 
YSK N13 C12  SING Y N 23 
YSK C12 C07  DOUB Y N 24 
YSK C09 C08  DOUB Y N 25 
YSK C07 C08  SING Y N 26 
YSK C07 C05  SING N N 27 
YSK N31 O32  SING Y N 28 
YSK N31 C04  DOUB Y N 29 
YSK O32 C02  SING Y N 30 
YSK C04 C05  SING N N 31 
YSK C04 N03  SING Y N 32 
YSK C05 C06  SING N N 33 
YSK C02 N03  DOUB Y N 34 
YSK C02 C01  SING N N 35 
YSK C10 H101 SING N N 36 
YSK C20 H201 SING N N 37 
YSK C21 H211 SING N N 38 
YSK C23 H231 SING N N 39 
YSK C23 H232 SING N N 40 
YSK C25 H252 SING N N 41 
YSK C25 H253 SING N N 42 
YSK C25 H251 SING N N 43 
YSK C01 H012 SING N N 44 
YSK C01 H013 SING N N 45 
YSK C01 H011 SING N N 46 
YSK C05 H051 SING N N 47 
YSK C06 H062 SING N N 48 
YSK C06 H063 SING N N 49 
YSK C06 H061 SING N N 50 
YSK C08 H081 SING N N 51 
YSK C09 H091 SING N N 52 
YSK C30 H301 SING N N 53 
YSK N13 H131 SING N N 54 
YSK O17 H1   SING N N 55 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YSK InChI            InChI                1.06  "InChI=1S/C22H20FN3O5S/c1-11(21-24-12(2)31-26-21)15-5-4-6-16-18(20(22(27)28)25-19(15)16)13-7-8-14(17(23)9-13)10-32(3,29)30/h4-9,11,25H,10H2,1-3H3,(H,27,28)/t11-/m0/s1" 
YSK InChIKey         InChI                1.06  KIPYOJMZYNOVAG-NSHDSACASA-N                                                                                                                                             
YSK SMILES_CANONICAL CACTVS               3.385 "C[C@H](c1noc(C)n1)c2cccc3c2[nH]c(C(O)=O)c3c4ccc(C[S](C)(=O)=O)c(F)c4"                                                                                                  
YSK SMILES           CACTVS               3.385 "C[CH](c1noc(C)n1)c2cccc3c2[nH]c(C(O)=O)c3c4ccc(C[S](C)(=O)=O)c(F)c4"                                                                                                   
YSK SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1nc(no1)[C@@H](C)c2cccc3c2[nH]c(c3c4ccc(c(c4)F)CS(=O)(=O)C)C(=O)O"                                                                                                   
YSK SMILES           "OpenEye OEToolkits" 2.0.7 "Cc1nc(no1)C(C)c2cccc3c2[nH]c(c3c4ccc(c(c4)F)CS(=O)(=O)C)C(=O)O"                                                                                                        
# 
_pdbx_chem_comp_identifier.comp_id           YSK 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "3-[3-fluoranyl-4-(methylsulfonylmethyl)phenyl]-7-[(1~{S})-1-(5-methyl-1,2,4-oxadiazol-3-yl)ethyl]-1~{H}-indole-2-carboxylic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YSK "Create component" 2023-06-20 PDBE 
YSK "Initial release"  2024-07-10 RCSB 
# 
