data_YQK
# 
_chem_comp.id                                    YQK 
_chem_comp.name                                  "(2~{E})-2-[(~{Z})-[2-methyl-3-oxidanyl-5-[[oxidanyl-bis(oxidanylidene)-$l^{6}-phosphanyl]oxymethyl]-1~{H}-pyridin-4-ylidene]methyl]imino-3-[(3~{S})-3-oxidanyl-2-oxidanylidene-1~{H}-indol-3-yl]propanoic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C19 H20 N3 O9 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-12-11 
_chem_comp.pdbx_modified_date                    2023-12-15 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        465.351 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YQK 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8V9P 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YQK C10  C1  C 0 1 N N N N N N 16.956 36.492 25.119 3.886  -0.123 0.803  C10  YQK 1  
YQK C01  C2  C 0 1 N N N N N N 14.930 34.878 21.102 -2.448 0.572  -0.183 C01  YQK 2  
YQK C02  C3  C 0 1 N N N N N N 13.744 35.772 21.348 -2.660 -0.904 0.038  C02  YQK 3  
YQK C03  C4  C 0 1 N N N N N N 13.322 36.005 22.665 -1.571 -1.802 -0.044 C03  YQK 4  
YQK C04  C5  C 0 1 N N N N N N 14.018 35.389 23.803 -0.272 -1.333 -0.332 C04  YQK 5  
YQK C05  C6  C 0 1 N N N N N N 14.315 35.340 26.123 1.932  -1.760 -0.790 C05  YQK 6  
YQK C06  C7  C 0 1 N N N N N N 15.619 34.566 26.088 2.176  -0.290 -1.015 C06  YQK 7  
YQK C07  C8  C 0 1 N N S N N N 16.885 35.441 26.197 2.543  0.375  0.313  C07  YQK 8  
YQK C08  C9  C 0 1 Y N N N N N 16.938 36.218 27.491 2.748  1.860  0.123  C08  YQK 9  
YQK C09  C10 C 0 1 Y N N N N N 17.043 37.558 27.131 4.067  2.121  0.476  C09  YQK 10 
YQK C11  C11 C 0 1 Y N N N N N 17.120 38.527 28.131 4.540  3.429  0.396  C11  YQK 11 
YQK C12  C12 C 0 1 Y N N N N N 17.093 38.152 29.460 3.706  4.443  -0.028 C12  YQK 12 
YQK C13  C13 C 0 1 Y N N N N N 16.988 36.816 29.809 2.396  4.171  -0.376 C13  YQK 13 
YQK C14  C14 C 0 1 Y N N N N N 16.914 35.847 28.818 1.918  2.873  -0.300 C14  YQK 14 
YQK C15  C15 C 0 1 N N N N N N 13.767 35.751 27.323 2.965  -2.678 -0.985 C15  YQK 15 
YQK C16  C16 C 0 1 N N N N N N 12.209 36.853 22.861 -1.812 -3.182 0.170  C16  YQK 16 
YQK C17  C17 C 0 1 N N N N N N 11.588 37.418 21.757 -3.074 -3.599 0.446  C17  YQK 17 
YQK C18  C18 C 0 1 N N N N N N 10.400 38.325 21.951 -3.343 -5.064 0.676  C18  YQK 18 
YQK C19  C19 C 0 1 N N N N N N 13.068 36.379 20.309 -3.894 -1.382 0.322  C19  YQK 19 
YQK N20  N1  N 0 1 N N N N N N 13.744 35.824 25.010 0.733  -2.182 -0.405 N20  YQK 20 
YQK N21  N2  N 0 1 N N N N N N 17.059 37.680 25.740 4.701  0.943  0.873  N21  YQK 21 
YQK N22  N3  N 0 1 N N N N N N 12.026 37.165 20.535 -4.096 -2.708 0.516  N22  YQK 22 
YQK O23  O1  O 0 1 N N N N N N 14.758 30.931 21.514 -3.304 3.260  -1.529 O23  YQK 23 
YQK O24  O2  O 0 1 N N N N N N 16.726 32.370 20.853 -5.394 3.262  -0.113 O24  YQK 24 
YQK O25  O3  O 0 1 N N N N N N 14.522 33.513 21.161 -3.693 1.258  -0.041 O25  YQK 25 
YQK O26  O4  O 0 1 N N N N N N 16.952 36.296 23.919 4.172  -1.267 1.084  O26  YQK 26 
YQK O27  O5  O 0 1 N N N N N N 13.081 36.757 27.357 4.038  -2.303 -1.428 O27  YQK 27 
YQK O28  O6  O 0 1 N N N N N N 13.980 35.054 28.460 2.777  -3.983 -0.684 O28  YQK 28 
YQK O29  O7  O 0 1 N N N N N N 11.767 37.102 24.116 -0.791 -4.078 0.100  O29  YQK 29 
YQK O30  O8  O 0 1 N N N N N N 15.886 32.607 23.210 -3.015 3.595  0.956  O30  YQK 30 
YQK O32  O9  O 0 1 N N N N N N 18.060 34.644 26.071 1.531  0.128  1.292  O32  YQK 31 
YQK P31  P1  P 0 1 N N N N N N 15.492 32.346 21.671 -3.840 2.853  -0.211 P31  YQK 32 
YQK H011 H1  H 0 0 N N N N N N 15.695 35.065 21.870 -1.738 0.951  0.552  H011 YQK 33 
YQK H012 H2  H 0 0 N N N N N N 15.349 35.092 20.108 -2.055 0.736  -1.186 H012 YQK 34 
YQK H041 H3  H 0 0 N N N N N N 14.737 34.598 23.650 -0.101 -0.279 -0.493 H041 YQK 35 
YQK H061 H5  H 0 0 N N N N N N 15.619 33.855 26.927 2.995  -0.162 -1.723 H061 YQK 36 
YQK H062 H6  H 0 0 N N N N N N 15.665 34.012 25.139 1.274  0.171  -1.415 H062 YQK 37 
YQK H111 H7  H 0 0 N N N N N N 17.201 39.571 27.866 5.562  3.649  0.666  H111 YQK 38 
YQK H121 H8  H 0 0 N N N N N N 17.154 38.905 30.232 4.078  5.455  -0.088 H121 YQK 39 
YQK H131 H9  H 0 0 N N N N N N 16.964 36.529 30.850 1.747  4.968  -0.707 H131 YQK 40 
YQK H141 H10 H 0 0 N N N N N N 16.838 34.804 29.086 0.896  2.657  -0.572 H141 YQK 41 
YQK H182 H11 H 0 0 N N N N N N 10.042 38.676 20.972 -3.230 -5.292 1.736  H182 YQK 42 
YQK H181 H12 H 0 0 N N N N N N 9.596  37.772 22.458 -4.359 -5.301 0.360  H181 YQK 43 
YQK H183 H13 H 0 0 N N N N N N 10.695 39.189 22.565 -2.635 -5.659 0.098  H183 YQK 44 
YQK H191 H14 H 0 0 N N N N N N 13.394 36.210 19.293 -4.728 -0.699 0.390  H191 YQK 45 
YQK H211 H15 H 0 0 N N N N N N 17.138 38.553 25.259 5.626  0.899  1.164  H211 YQK 46 
YQK H2   H16 H 0 1 N N N N N N 13.531 35.479 29.181 3.548  -4.541 -0.853 H2   YQK 47 
YQK H3   H17 H 0 1 N N N N N N 11.018 37.685 24.079 -1.059 -4.993 0.261  H3   YQK 48 
YQK H4   H18 H 0 1 N N N N N N 15.607 31.868 23.738 -3.313 3.375  1.849  H4   YQK 49 
YQK H321 H19 H 0 0 N N N N N N 18.414 34.737 25.194 1.381  -0.809 1.474  H321 YQK 50 
YQK H221 H21 H 0 0 N N N N N N 11.555 37.580 19.757 -4.991 -3.027 0.715  H221 YQK 51 
YQK H1   H20 H 0 1 N N N N N N 16.825 31.539 20.404 -5.557 4.211  -0.207 H1   YQK 52 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YQK C01 O25  SING N N 1  
YQK C01 C02  SING N N 2  
YQK C02 C19  DOUB N N 3  
YQK C02 C03  SING N N 4  
YQK C03 C04  DOUB N Z 5  
YQK C03 C16  SING N N 6  
YQK C04 N20  SING N N 7  
YQK C05 C06  SING N N 8  
YQK C05 N20  DOUB N N 9  
YQK C05 C15  SING N N 10 
YQK C06 C07  SING N N 11 
YQK C07 C08  SING N N 12 
YQK C07 C10  SING N N 13 
YQK C07 O32  SING N N 14 
YQK C08 C14  DOUB Y N 15 
YQK C08 C09  SING Y N 16 
YQK C09 N21  SING N N 17 
YQK C09 C11  DOUB Y N 18 
YQK C10 O26  DOUB N N 19 
YQK C10 N21  SING N N 20 
YQK C11 C12  SING Y N 21 
YQK C12 C13  DOUB Y N 22 
YQK C13 C14  SING Y N 23 
YQK C15 O27  DOUB N N 24 
YQK C15 O28  SING N N 25 
YQK C16 C17  DOUB N N 26 
YQK C16 O29  SING N N 27 
YQK C17 N22  SING N N 28 
YQK C17 C18  SING N N 29 
YQK C19 N22  SING N N 30 
YQK O23 P31  DOUB N N 31 
YQK O24 P31  SING N N 32 
YQK O25 P31  SING N N 33 
YQK O30 P31  SING N N 34 
YQK C01 H011 SING N N 35 
YQK C01 H012 SING N N 36 
YQK C04 H041 SING N N 37 
YQK C06 H061 SING N N 38 
YQK C06 H062 SING N N 39 
YQK C11 H111 SING N N 40 
YQK C12 H121 SING N N 41 
YQK C13 H131 SING N N 42 
YQK C14 H141 SING N N 43 
YQK C18 H182 SING N N 44 
YQK C18 H181 SING N N 45 
YQK C18 H183 SING N N 46 
YQK C19 H191 SING N N 47 
YQK N21 H211 SING N N 48 
YQK O28 H2   SING N N 49 
YQK O29 H3   SING N N 50 
YQK O30 H4   SING N N 51 
YQK O32 H321 SING N N 52 
YQK N22 H221 SING N N 53 
YQK O24 H1   SING N N 54 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YQK SMILES           ACDLabs              12.01 "O=P(O)(O)OCC/1=CNC(C)=C(O)C\1=C\N=C(/CC1(O)c2ccccc2NC1=O)C(=O)O"                                                                                                                                             
YQK InChI            InChI                1.06  "InChI=1S/C19H20N3O9P/c1-10-16(23)12(11(7-20-10)9-31-32(28,29)30)8-21-15(17(24)25)6-19(27)13-4-2-3-5-14(13)22-18(19)26/h2-5,7-8,20,23,27H,6,9H2,1H3,(H,22,26)(H,24,25)(H2,28,29,30)/b12-8-,21-15+/t19-/m0/s1" 
YQK InChIKey         InChI                1.06  MNDDBLQWOZGYHE-LDSSDFKRSA-N                                                                                                                                                                                   
YQK SMILES_CANONICAL CACTVS               3.385 "CC1=C(O)C(=C\N=C(C[C@@]2(O)C(=O)Nc3ccccc23)C(O)=O)/C(=CN1)CO[P](O)(O)=O"                                                                                                                                     
YQK SMILES           CACTVS               3.385 "CC1=C(O)C(=CN=C(C[C]2(O)C(=O)Nc3ccccc23)C(O)=O)C(=CN1)CO[P](O)(O)=O"                                                                                                                                         
YQK SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC1=C(/C(=C\N=C(/C[C@@]2(c3ccccc3NC2=O)O)\C(=O)O)/C(=CN1)COP(=O)(O)O)O"                                                                                                                                      
YQK SMILES           "OpenEye OEToolkits" 2.0.7 "CC1=C(C(=CN=C(CC2(c3ccccc3NC2=O)O)C(=O)O)C(=CN1)COP(=O)(O)O)O"                                                                                                                                               
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
YQK "SYSTEMATIC NAME" ACDLabs              12.01 "(2E)-2-{[(Z)-{3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4(1H)-ylidene}methyl]imino}-3-[(3S)-3-hydroxy-2-oxo-2,3-dihydro-1H-indol-3-yl]propanoic acid"            
YQK "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{E})-2-[(~{Z})-[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)-1~{H}-pyridin-4-ylidene]methyl]imino-3-[(3~{S})-3-oxidanyl-2-oxidanylidene-1~{H}-indol-3-yl]propanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YQK "Create component" 2023-12-11 RCSB 
YQK "Initial release"  2023-12-20 RCSB 
# 
