data_YMK
# 
_chem_comp.id                                    YMK 
_chem_comp.name                                  "(2~{R})-3-bis[2-methyl-5-(trifluoromethyl)pyrazol-3-yl]boranyloxypropane-1,2-diol" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C13 H15 B F6 N4 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-06-19 
_chem_comp.pdbx_modified_date                    2024-01-19 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        400.085 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YMK 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8PF8 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YMK C12 C1  C 0 1 N N R N N N -59.447 30.386 -39.148 2.728  3.283  0.087  C12 YMK 1  
YMK C13 C2  C 0 1 N N N N N N -60.091 29.017 -39.167 4.244  3.118  0.212  C13 YMK 2  
YMK B1  B1  B 0 1 N N N N N N -58.593 33.156 -41.236 -0.065 0.829  0.108  B1  YMK 3  
YMK C1  C3  C 0 1 Y N N N N N -61.171 35.741 -40.369 -3.755 0.231  -0.138 C1  YMK 4  
YMK C10 C4  C 0 1 N N N N N N -56.576 35.623 -41.264 -0.726 -1.577 2.031  C10 YMK 5  
YMK C11 C5  C 0 1 N N N N N N -59.224 30.940 -40.535 2.068  1.903  0.033  C11 YMK 6  
YMK C2  C6  C 0 1 Y N N N N N -59.952 35.121 -40.091 -2.452 -0.274 -0.140 C2  YMK 7  
YMK C3  C7  C 0 1 Y N N N N N -59.813 34.121 -41.028 -1.633 0.825  0.034  C3  YMK 8  
YMK C4  C8  C 0 1 N N N N N N -61.794 36.910 -39.695 -5.019 -0.574 -0.297 C4  YMK 9  
YMK C5  C9  C 0 1 N N N N N N -61.309 33.365 -42.966 -2.018 3.291  0.324  C5  YMK 10 
YMK C6  C10 C 0 1 Y N N N N N -56.448 33.777 -44.261 2.165  -2.181 0.066  C6  YMK 11 
YMK C7  C11 C 0 1 Y N N N N N -57.400 32.982 -43.617 1.853  -0.910 -0.421 C7  YMK 12 
YMK C8  C12 C 0 1 Y N N N N N -57.595 33.556 -42.380 0.717  -0.524 0.265  C8  YMK 13 
YMK C9  C13 C 0 1 N N N N N N -55.899 33.642 -45.639 3.330  -3.034 -0.365 C9  YMK 14 
YMK F1  F1  F 0 1 N N N N N N -62.541 36.551 -38.662 -5.999 0.213  -0.910 F1  YMK 15 
YMK F2  F2  F 0 1 N N N N N N -62.578 37.597 -40.514 -4.760 -1.698 -1.089 F2  YMK 16 
YMK F3  F3  F 0 1 N N N N N N -60.888 37.760 -39.235 -5.471 -0.985 0.962  F3  YMK 17 
YMK F4  F4  F 0 1 N N N N N N -56.719 32.981 -46.444 4.437  -2.755 0.444  F4  YMK 18 
YMK F5  F5  F 0 1 N N N N N N -54.741 32.998 -45.657 2.991  -4.386 -0.239 F5  YMK 19 
YMK F6  F6  F 0 1 N N N N N N -55.684 34.821 -46.205 3.645  -2.755 -1.699 F6  YMK 20 
YMK N1  N1  N 0 1 Y N N N N N -60.948 34.185 -41.817 -2.459 1.907  0.129  N1  YMK 21 
YMK N2  N2  N 0 1 Y N N N N N -61.788 35.187 -41.409 -3.682 1.527  0.031  N2  YMK 22 
YMK N3  N3  N 0 1 Y N N N N N -56.758 34.656 -42.339 0.410  -1.553 1.107  N3  YMK 23 
YMK N4  N4  N 0 1 Y N N N N N -56.049 34.793 -43.502 1.269  -2.497 0.966  N4  YMK 24 
YMK O1  O1  O 0 1 N N N N N N -58.393 32.058 -40.457 0.647  2.055  0.033  O1  YMK 25 
YMK O2  O2  O 0 1 N N N N N N -59.283 28.092 -39.882 4.851  4.400  0.380  O2  YMK 26 
YMK O3  O3  O 0 1 N N N N N N -58.199 30.327 -38.453 2.425  4.004  -1.108 O3  YMK 27 
YMK H1  H1  H 0 1 N N N N N N -60.122 31.070 -38.614 2.350  3.832  0.949  H1  YMK 28 
YMK H2  H2  H 0 1 N N N N N N -61.075 29.088 -39.653 4.472  2.492  1.076  H2  YMK 29 
YMK H3  H3  H 0 1 N N N N N N -60.217 28.663 -38.133 4.634  2.647  -0.690 H3  YMK 30 
YMK H4  H4  H 0 1 N N N N N N -55.838 36.379 -41.571 -1.607 -1.961 1.515  H4  YMK 31 
YMK H5  H5  H 0 1 N N N N N N -57.536 36.115 -41.047 -0.492 -2.222 2.878  H5  YMK 32 
YMK H6  H6  H 0 1 N N N N N N -56.217 35.105 -40.362 -0.926 -0.567 2.388  H6  YMK 33 
YMK H7  H7  H 0 1 N N N N N N -60.190 31.230 -40.974 2.378  1.388  -0.877 H7  YMK 34 
YMK H8  H8  H 0 1 N N N N N N -58.750 30.173 -41.165 2.372  1.321  0.902  H8  YMK 35 
YMK H9  H9  H 0 1 N N N N N N -59.259 35.374 -39.302 -2.149 -1.304 -0.254 H9  YMK 36 
YMK H10 H10 H 0 1 N N N N N N -62.278 33.699 -43.366 -1.950 3.503  1.391  H10 YMK 37 
YMK H11 H11 H 0 1 N N N N N N -60.538 33.464 -43.744 -1.041 3.429  -0.137 H11 YMK 38 
YMK H12 H12 H 0 1 N N N N N N -61.384 32.312 -42.656 -2.737 3.969  -0.136 H12 YMK 39 
YMK H13 H13 H 0 1 N N N N N N -57.883 32.099 -44.009 2.386  -0.347 -1.173 H13 YMK 40 
YMK H14 H14 H 0 1 N N N N N N -59.702 27.240 -39.883 5.813  4.372  0.466  H14 YMK 41 
YMK H15 H15 H 0 1 N N N N N N -58.338 29.979 -37.580 2.732  3.572  -1.917 H15 YMK 42 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YMK F4  C9  SING N N 1  
YMK F6  C9  SING N N 2  
YMK F5  C9  SING N N 3  
YMK C9  C6  SING N N 4  
YMK C6  C7  SING Y N 5  
YMK C6  N4  DOUB Y N 6  
YMK C7  C8  DOUB Y N 7  
YMK N4  N3  SING Y N 8  
YMK C5  N1  SING N N 9  
YMK C8  N3  SING Y N 10 
YMK C8  B1  SING N N 11 
YMK N3  C10 SING N N 12 
YMK N1  N2  SING Y N 13 
YMK N1  C3  SING Y N 14 
YMK N2  C1  DOUB Y N 15 
YMK B1  C3  SING N N 16 
YMK B1  O1  SING N N 17 
YMK C3  C2  DOUB Y N 18 
YMK C11 O1  SING N N 19 
YMK C11 C12 SING N N 20 
YMK F2  C4  SING N N 21 
YMK C1  C2  SING Y N 22 
YMK C1  C4  SING N N 23 
YMK O2  C13 SING N N 24 
YMK C4  F3  SING N N 25 
YMK C4  F1  SING N N 26 
YMK C13 C12 SING N N 27 
YMK C12 O3  SING N N 28 
YMK C12 H1  SING N N 29 
YMK C13 H2  SING N N 30 
YMK C13 H3  SING N N 31 
YMK C10 H4  SING N N 32 
YMK C10 H5  SING N N 33 
YMK C10 H6  SING N N 34 
YMK C11 H7  SING N N 35 
YMK C11 H8  SING N N 36 
YMK C2  H9  SING N N 37 
YMK C5  H10 SING N N 38 
YMK C5  H11 SING N N 39 
YMK C5  H12 SING N N 40 
YMK C7  H13 SING N N 41 
YMK O2  H14 SING N N 42 
YMK O3  H15 SING N N 43 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YMK InChI            InChI                1.06  "InChI=1S/C13H15BF6N4O3/c1-23-10(3-8(21-23)12(15,16)17)14(27-6-7(26)5-25)11-4-9(13(18,19)20)22-24(11)2/h3-4,7,25-26H,5-6H2,1-2H3/t7-/m1/s1" 
YMK InChIKey         InChI                1.06  ZMDZOWFKTCAOKY-SSDOTTSWSA-N                                                                                                                 
YMK SMILES_CANONICAL CACTVS               3.385 "Cn1nc(cc1B(OC[C@H](O)CO)c2cc(nn2C)C(F)(F)F)C(F)(F)F"                                                                                       
YMK SMILES           CACTVS               3.385 "Cn1nc(cc1B(OC[CH](O)CO)c2cc(nn2C)C(F)(F)F)C(F)(F)F"                                                                                        
YMK SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "B(c1cc(nn1C)C(F)(F)F)(c2cc(nn2C)C(F)(F)F)OC[C@@H](CO)O"                                                                                    
YMK SMILES           "OpenEye OEToolkits" 2.0.7 "B(c1cc(nn1C)C(F)(F)F)(c2cc(nn2C)C(F)(F)F)OCC(CO)O"                                                                                         
# 
_pdbx_chem_comp_identifier.comp_id           YMK 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(2~{R})-3-bis[2-methyl-5-(trifluoromethyl)pyrazol-3-yl]boranyloxypropane-1,2-diol" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YMK "Create component" 2023-06-19 PDBE 
YMK "Initial release"  2024-01-24 RCSB 
# 
