data_YJK
# 
_chem_comp.id                                    YJK 
_chem_comp.name                                  "4-[(3,4-dichlorophenyl)methyl]-~{N}-[[5-[2-(4-fluorophenyl)ethylcarbamoyl]furan-2-yl]methyl]-4-(3-phenylpropyl)-1,4$l^{4}-diazinane-1-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C35 H38 Cl2 F N4 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-06-19 
_chem_comp.pdbx_modified_date                    2024-03-29 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        652.606 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YJK 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   Y 
_chem_comp.pdbx_model_coordinates_db_code        8PF5 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YJK C1  C1  C  0 1 Y N N N N N 11.771 -1.849  16.547 ? ? ? C1  YJK 1  
YJK C2  C2  C  0 1 Y N N N N N 12.149 -3.134  16.808 ? ? ? C2  YJK 2  
YJK C4  C3  C  0 1 Y N N N N N 14.006 -2.840  15.280 ? ? ? C4  YJK 3  
YJK C5  C4  C  0 1 N N N N N N 15.234 -3.380  14.582 ? ? ? C5  YJK 4  
YJK C6  C5  C  0 1 N N N N N N 14.896 -3.951  13.222 ? ? ? C6  YJK 5  
YJK C9  C6  C  0 1 Y N N N N N 10.713 -6.749  13.251 ? ? ? C9  YJK 6  
YJK O3  O1  O  0 1 N N N N N N 12.075 -4.021  12.888 ? ? ? O3  YJK 7  
YJK C10 C7  C  0 1 Y N N N N N 10.728 -8.172  13.350 ? ? ? C10 YJK 8  
YJK C12 C8  C  0 1 N N N N N N 12.724 -9.856  13.574 ? ? ? C12 YJK 9  
YJK C13 C9  C  0 1 N N N N N N 12.186 -11.113 15.668 ? ? ? C13 YJK 10 
YJK C14 C10 C  0 1 N N N N N N 14.614 -10.348 15.917 ? ? ? C14 YJK 11 
YJK C15 C11 C  0 1 N N N N N N 15.700 -10.939 16.788 ? ? ? C15 YJK 12 
YJK C16 C12 C  0 1 N N N N N N 16.598 -11.082 19.134 ? ? ? C16 YJK 13 
YJK C17 C13 C  0 1 N N N N N N 16.087 -12.087 20.162 ? ? ? C17 YJK 14 
YJK C18 C14 C  0 1 N N N N N N 14.555 -12.244 20.128 ? ? ? C18 YJK 15 
YJK C19 C15 C  0 1 Y N N N N N 13.999 -13.352 20.995 ? ? ? C19 YJK 16 
YJK C20 C16 C  0 1 Y N N N N N 14.624 -13.718 22.177 ? ? ? C20 YJK 17 
YJK C21 C17 C  0 1 Y N N N N N 14.101 -14.731 22.970 ? ? ? C21 YJK 18 
YJK C23 C18 C  0 1 Y N N N N N 12.319 -15.034 21.427 ? ? ? C23 YJK 19 
YJK C24 C19 C  0 1 Y N N N N N 12.838 -14.023 20.632 ? ? ? C24 YJK 20 
YJK C25 C20 C  0 1 N N N N N N 15.421 -9.003  18.332 ? ? ? C25 YJK 21 
YJK C26 C21 C  0 1 Y N N N N N 14.051 -8.524  18.726 ? ? ? C26 YJK 22 
YJK C27 C22 C  0 1 Y N N N N N 13.162 -8.029  17.783 ? ? ? C27 YJK 23 
YJK F1  F1  F  0 1 N N N N N N 10.656 -1.361  17.153 ? ? ? F1  YJK 24 
YJK C3  C23 C  0 1 Y N N N N N 13.272 -3.628  16.161 ? ? ? C3  YJK 25 
YJK N1  N1  N  0 1 N N N N N N 14.010 -5.099  13.334 ? ? ? N1  YJK 26 
YJK C7  C24 C  0 1 N N N N N N 12.682 -5.052  13.183 ? ? ? C7  YJK 27 
YJK C8  C25 C  0 1 Y N N N N N 12.008 -6.348  13.291 ? ? ? C8  YJK 28 
YJK C11 C26 C  0 1 Y N N N N N 12.023 -8.550  13.456 ? ? ? C11 YJK 29 
YJK N2  N2  N  0 1 N N N N N N 12.023 -10.879 14.343 ? ? ? N2  YJK 30 
YJK N3  N3  N  0 1 N N N N N N 13.268 -10.663 16.403 ? ? ? N3  YJK 31 
YJK N4  N4  N  0 1 N N N N N N 15.504 -10.527 18.232 ? ? ? N4  YJK 32 
YJK C22 C27 C  0 1 Y N N N N N 12.949 -15.385 22.595 ? ? ? C22 YJK 33 
YJK C28 C28 C  0 1 Y N N N N N 11.895 -7.618  18.148 ? ? ? C28 YJK 34 
YJK C29 C29 C  0 1 Y N N N N N 11.510 -7.719  19.467 ? ? ? C29 YJK 35 
YJK CL1 CL1 CL 0 0 N N N N N N 9.928  -7.203  19.920 ? ? ? CL1 YJK 36 
YJK C30 C30 C  0 1 Y N N N N N 12.382 -8.224  20.411 ? ? ? C30 YJK 37 
YJK CL2 CL2 CL 0 0 N N N N N N 11.929 -8.352  22.071 ? ? ? CL2 YJK 38 
YJK C31 C31 C  0 1 Y N N N N N 13.645 -8.634  20.043 ? ? ? C31 YJK 39 
YJK C32 C32 C  0 1 N N N N N N 14.160 -11.088 18.639 ? ? ? C32 YJK 40 
YJK C33 C33 C  0 1 N N N N N N 13.083 -10.406 17.831 ? ? ? C33 YJK 41 
YJK O1  O2  O  0 1 N N N N N N 11.341 -11.794 16.246 ? ? ? O1  YJK 42 
YJK O2  O3  O  0 1 Y N N N N N 12.831 -7.439  13.405 ? ? ? O2  YJK 43 
YJK C34 C34 C  0 1 Y N N N N N 13.567 -1.545  15.042 ? ? ? C34 YJK 44 
YJK C35 C35 C  0 1 Y N N N N N 12.438 -1.041  15.673 ? ? ? C35 YJK 45 
YJK H1  H1  H  0 1 N N N N N N 11.590 -3.748  17.498 ? ? ? H1  YJK 46 
YJK H2  H2  H  0 1 N N N N N N 15.961 -2.564  14.456 ? ? ? H2  YJK 47 
YJK H3  H3  H  0 1 N N N N N N 15.677 -4.173  15.202 ? ? ? H3  YJK 48 
YJK H4  H4  H  0 1 N N N N N N 14.401 -3.174  12.621 ? ? ? H4  YJK 49 
YJK H5  H5  H  0 1 N N N N N N 15.826 -4.264  12.724 ? ? ? H5  YJK 50 
YJK H6  H6  H  0 1 N N N N N N 9.842  -6.116  13.162 ? ? ? H6  YJK 51 
YJK H7  H7  H  0 1 N N N N N N 9.868  -8.825  13.342 ? ? ? H7  YJK 52 
YJK H8  H8  H  0 1 N N N N N N 12.885 -10.247 12.558 ? ? ? H8  YJK 53 
YJK H9  H9  H  0 1 N N N N N N 13.696 -9.676  14.056 ? ? ? H9  YJK 54 
YJK H10 H10 H  0 1 N N N N N N 14.734 -9.255  15.897 ? ? ? H10 YJK 55 
YJK H11 H11 H  0 1 N N N N N N 14.723 -10.748 14.898 ? ? ? H11 YJK 56 
YJK H12 H12 H  0 1 N N N N N N 15.665 -12.036 16.716 ? ? ? H12 YJK 57 
YJK H13 H13 H  0 1 N N N N N N 16.679 -10.580 16.439 ? ? ? H13 YJK 58 
YJK H14 H14 H  0 1 N N N N N N 17.066 -10.243 19.670 ? ? ? H14 YJK 59 
YJK H15 H15 H  0 1 N N N N N N 17.350 -11.580 18.504 ? ? ? H15 YJK 60 
YJK H16 H16 H  0 1 N N N N N N 16.546 -13.065 19.956 ? ? ? H16 YJK 61 
YJK H17 H17 H  0 1 N N N N N N 16.384 -11.747 21.165 ? ? ? H17 YJK 62 
YJK H18 H18 H  0 1 N N N N N N 14.109 -11.295 20.461 ? ? ? H18 YJK 63 
YJK H19 H19 H  0 1 N N N N N N 14.257 -12.444 19.088 ? ? ? H19 YJK 64 
YJK H20 H20 H  0 1 N N N N N N 15.526 -13.210 22.484 ? ? ? H20 YJK 65 
YJK H21 H21 H  0 1 N N N N N N 14.601 -15.007 23.886 ? ? ? H21 YJK 66 
YJK H22 H22 H  0 1 N N N N N N 11.417 -15.546 21.126 ? ? ? H22 YJK 67 
YJK H23 H23 H  0 1 N N N N N N 12.332 -13.753 19.717 ? ? ? H23 YJK 68 
YJK H24 H24 H  0 1 N N N N N N 15.678 -8.571  17.353 ? ? ? H24 YJK 69 
YJK H25 H25 H  0 1 N N N N N N 16.145 -8.659  19.086 ? ? ? H25 YJK 70 
YJK H26 H26 H  0 1 N N N N N N 13.465 -7.964  16.748 ? ? ? H26 YJK 71 
YJK H27 H27 H  0 1 N N N N N N 13.583 -4.646  16.345 ? ? ? H27 YJK 72 
YJK H28 H28 H  0 1 N N N N N N 14.423 -5.986  13.538 ? ? ? H28 YJK 73 
YJK H29 H29 H  0 1 N N N N N N 11.369 -11.454 13.852 ? ? ? H29 YJK 74 
YJK H30 H30 H  0 1 N N N N N N 12.543 -16.170 23.216 ? ? ? H30 YJK 75 
YJK H31 H31 H  0 1 N N N N N N 11.214 -7.222  17.409 ? ? ? H31 YJK 76 
YJK H32 H32 H  0 1 N N N N N N 14.318 -9.041  20.783 ? ? ? H32 YJK 77 
YJK H33 H33 H  0 1 N N N N N N 14.137 -12.171 18.446 ? ? ? H33 YJK 78 
YJK H34 H34 H  0 1 N N N N N N 13.991 -10.903 19.710 ? ? ? H34 YJK 79 
YJK H35 H35 H  0 1 N N N N N N 13.128 -9.322  18.012 ? ? ? H35 YJK 80 
YJK H36 H36 H  0 1 N N N N N N 12.100 -10.789 18.143 ? ? ? H36 YJK 81 
YJK H37 H37 H  0 1 N N N N N N 14.114 -0.918  14.353 ? ? ? H37 YJK 82 
YJK H38 H38 H  0 1 N N N N N N 12.096 -0.035  15.477 ? ? ? H38 YJK 83 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YJK C1  C2  DOUB Y N 1  
YJK C1  F1  SING N N 2  
YJK C1  C35 SING Y N 3  
YJK C2  C3  SING Y N 4  
YJK C4  C5  SING N N 5  
YJK C4  C3  DOUB Y N 6  
YJK C4  C34 SING Y N 7  
YJK C5  C6  SING N N 8  
YJK C6  N1  SING N N 9  
YJK C9  C10 SING Y N 10 
YJK C9  C8  DOUB Y N 11 
YJK O3  C7  DOUB N N 12 
YJK C10 C11 DOUB Y N 13 
YJK C12 C11 SING N N 14 
YJK C12 N2  SING N N 15 
YJK C13 N2  SING N N 16 
YJK C13 N3  SING N N 17 
YJK C13 O1  DOUB N N 18 
YJK C14 C15 SING N N 19 
YJK C14 N3  SING N N 20 
YJK C15 N4  SING N N 21 
YJK C16 C17 SING N N 22 
YJK C16 N4  SING N N 23 
YJK C17 C18 SING N N 24 
YJK C18 C19 SING N N 25 
YJK C19 C20 DOUB Y N 26 
YJK C19 C24 SING Y N 27 
YJK C20 C21 SING Y N 28 
YJK C21 C22 DOUB Y N 29 
YJK C23 C24 DOUB Y N 30 
YJK C23 C22 SING Y N 31 
YJK C25 C26 SING N N 32 
YJK C25 N4  SING N N 33 
YJK C26 C27 DOUB Y N 34 
YJK C26 C31 SING Y N 35 
YJK C27 C28 SING Y N 36 
YJK N1  C7  SING N N 37 
YJK C7  C8  SING N N 38 
YJK C8  O2  SING Y N 39 
YJK C11 O2  SING Y N 40 
YJK N3  C33 SING N N 41 
YJK N4  C32 SING N N 42 
YJK C28 C29 DOUB Y N 43 
YJK C29 CL1 SING N N 44 
YJK C29 C30 SING Y N 45 
YJK C30 CL2 SING N N 46 
YJK C30 C31 DOUB Y N 47 
YJK C32 C33 SING N N 48 
YJK C34 C35 DOUB Y N 49 
YJK C2  H1  SING N N 50 
YJK C5  H2  SING N N 51 
YJK C5  H3  SING N N 52 
YJK C6  H4  SING N N 53 
YJK C6  H5  SING N N 54 
YJK C9  H6  SING N N 55 
YJK C10 H7  SING N N 56 
YJK C12 H8  SING N N 57 
YJK C12 H9  SING N N 58 
YJK C14 H10 SING N N 59 
YJK C14 H11 SING N N 60 
YJK C15 H12 SING N N 61 
YJK C15 H13 SING N N 62 
YJK C16 H14 SING N N 63 
YJK C16 H15 SING N N 64 
YJK C17 H16 SING N N 65 
YJK C17 H17 SING N N 66 
YJK C18 H18 SING N N 67 
YJK C18 H19 SING N N 68 
YJK C20 H20 SING N N 69 
YJK C21 H21 SING N N 70 
YJK C23 H22 SING N N 71 
YJK C24 H23 SING N N 72 
YJK C25 H24 SING N N 73 
YJK C25 H25 SING N N 74 
YJK C27 H26 SING N N 75 
YJK C3  H27 SING N N 76 
YJK N1  H28 SING N N 77 
YJK N2  H29 SING N N 78 
YJK C22 H30 SING N N 79 
YJK C28 H31 SING N N 80 
YJK C31 H32 SING N N 81 
YJK C32 H33 SING N N 82 
YJK C32 H34 SING N N 83 
YJK C33 H35 SING N N 84 
YJK C33 H36 SING N N 85 
YJK C34 H37 SING N N 86 
YJK C35 H38 SING N N 87 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YJK InChI            InChI                1.06  "InChI=1S/C35H38Cl2FN4O3/c36-31-14-10-28(23-32(31)37)25-42(20-4-7-26-5-2-1-3-6-26)21-18-41(19-22-42)35(44)40-24-30-13-15-33(45-30)34(43)39-17-16-27-8-11-29(38)12-9-27/h1-3,5-6,8-15,23H,4,7,16-22,24-25H2,(H,39,43)(H,40,44)" 
YJK InChIKey         InChI                1.06  HKQZNXHCKAHUIF-UHFFFAOYSA-N                                                                                                                                                                                                    
YJK SMILES_CANONICAL CACTVS               3.385 "Fc1ccc(CCNC(=O)c2oc(CNC(=O)N3CC[N](CCCc4ccccc4)(CC3)Cc5ccc(Cl)c(Cl)c5)cc2)cc1"                                                                                                                                                
YJK SMILES           CACTVS               3.385 "Fc1ccc(CCNC(=O)c2oc(CNC(=O)N3CC[N](CCCc4ccccc4)(CC3)Cc5ccc(Cl)c(Cl)c5)cc2)cc1"                                                                                                                                                
YJK SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)CCC[N]2(CCN(CC2)C(=O)NCc3ccc(o3)C(=O)NCCc4ccc(cc4)F)Cc5ccc(c(c5)Cl)Cl"                                                                                                                                              
YJK SMILES           "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)CCC[N]2(CCN(CC2)C(=O)NCc3ccc(o3)C(=O)NCCc4ccc(cc4)F)Cc5ccc(c(c5)Cl)Cl"                                                                                                                                              
# 
_pdbx_chem_comp_identifier.comp_id           YJK 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "4-[(3,4-dichlorophenyl)methyl]-~{N}-[[5-[2-(4-fluorophenyl)ethylcarbamoyl]furan-2-yl]methyl]-4-(3-phenylpropyl)-1,4$l^{4}-diazinane-1-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YJK "Create component" 2023-06-19 PDBE 
YJK "Initial release"  2024-04-03 RCSB 
# 
