data_YFK
# 
_chem_comp.id                                    YFK 
_chem_comp.name                                  "4-methoxy-N-[(2S)-4-methyl-1-oxo-1-({(2S)-1-[(3S)-2-oxopyrrolidin-3-yl]but-3-en-2-yl}amino)pentan-2-yl]-1H-indole-2-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C24 H32 N4 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-01-26 
_chem_comp.pdbx_modified_date                    2023-08-25 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        440.535 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YFK 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8FY7 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YFK C04  C1  C 0 1 N N S 8.825  10.861 27.486 3.987  -0.209 -1.338 C04  YFK 1  
YFK C05  C2  C 0 1 N N N 7.826  10.771 26.308 5.186  0.351  -0.570 C05  YFK 2  
YFK C06  C3  C 0 1 N N S 7.406  12.106 25.850 4.756  1.595  0.210  C06  YFK 3  
YFK C09  C4  C 0 1 N N N 5.564  13.496 26.152 4.884  3.980  -0.012 C09  YFK 4  
YFK C10  C5  C 0 1 N N N 6.524  12.784 26.888 4.362  2.733  -0.760 C10  YFK 5  
YFK C13  C6  C 0 1 N N N 8.493  9.304  29.233 3.859  -2.522 -2.109 C13  YFK 6  
YFK C14  C7  C 0 1 N N S 11.918 13.187 27.004 0.635  -1.157 0.247  C14  YFK 7  
YFK C15  C8  C 0 1 N N N 12.981 12.917 28.094 0.640  -2.676 0.434  C15  YFK 8  
YFK C16  C9  C 0 1 N N N 14.430 13.252 27.637 1.962  -3.107 1.072  C16  YFK 9  
YFK C17  C10 C 0 1 N N N 14.910 12.259 26.560 2.039  -2.566 2.501  C17  YFK 10 
YFK C18  C11 C 0 1 N N N 15.412 13.231 28.848 2.039  -4.635 1.101  C18  YFK 11 
YFK C20  C12 C 0 1 N N N 11.165 15.077 25.526 -1.653 -0.425 0.650  C20  YFK 12 
YFK C21  C13 C 0 1 Y N N 11.137 16.577 25.244 -3.004 -0.102 0.172  C21  YFK 13 
YFK C23  C14 C 0 1 Y N N 11.574 18.804 25.301 -5.173 0.458  0.116  C23  YFK 14 
YFK C24  C15 C 0 1 Y N N 10.722 18.531 24.252 -4.731 0.272  -1.208 C24  YFK 15 
YFK C25  C16 C 0 1 Y N N 10.225 19.590 23.440 -5.624 0.448  -2.262 C25  YFK 16 
YFK C26  C17 C 0 1 Y N N 10.629 20.911 23.697 -6.931 0.801  -2.007 C26  YFK 17 
YFK C28  C18 C 0 1 Y N N 11.981 20.143 25.570 -6.510 0.820  0.358  C28  YFK 18 
YFK O32  O1  O 0 1 N N N 10.670 14.312 24.795 -1.413 -0.420 1.843  O32  YFK 19 
YFK C02  C19 C 0 1 N N N 10.575 12.718 27.515 1.687  -0.772 -0.761 C02  YFK 20 
YFK C07  C20 C 0 1 N N N 6.427  11.893 24.591 5.923  2.160  0.990  C07  YFK 21 
YFK C12  C21 C 0 1 N N N 9.081  9.434  28.024 4.438  -1.351 -2.211 C12  YFK 22 
YFK C22  C22 C 0 1 Y N N 11.856 17.556 25.928 -4.065 0.218  0.960  C22  YFK 23 
YFK C27  C23 C 0 1 Y N N 11.504 21.188 24.766 -7.374 0.987  -0.706 C27  YFK 24 
YFK C30  C24 C 0 1 N N N 13.523 21.634 26.695 -8.319 1.371  1.797  C30  YFK 25 
YFK N03  N1  N 0 1 N N N 10.097 11.416 27.048 2.980  -0.688 -0.388 N03  YFK 26 
YFK N08  N2  N 0 1 N N N 5.356  12.703 24.801 5.974  3.496  0.844  N08  YFK 27 
YFK N19  N3  N 0 1 N N N 11.799 14.595 26.728 -0.681 -0.728 -0.232 N19  YFK 28 
YFK N31  N4  N 0 1 Y N N 10.502 17.168 24.237 -3.400 -0.068 -1.153 N31  YFK 29 
YFK O01  O2  O 0 1 N N N 9.957  13.417 28.261 1.371  -0.537 -1.908 O01  YFK 30 
YFK O11  O3  O 0 1 N N N 6.597  11.149 23.655 6.699  1.504  1.652  O11  YFK 31 
YFK O29  O4  O 0 1 N N N 12.860 20.379 26.653 -6.948 1.005  1.630  O29  YFK 32 
YFK H041 H1  H 0 0 N N N 8.389  11.478 28.286 3.555  0.575  -1.960 H041 YFK 33 
YFK H051 H2  H 0 0 N N N 6.938  10.210 26.635 5.557  -0.403 0.124  H051 YFK 34 
YFK H052 H3  H 0 0 N N N 8.307  10.242 25.472 5.975  0.618  -1.273 H052 YFK 35 
YFK H061 H4  H 0 0 N N N 8.260  12.740 25.568 3.927  1.359  0.877  H061 YFK 36 
YFK H091 H5  H 0 0 N N N 5.924  14.514 25.943 5.261  4.716  -0.722 H091 YFK 37 
YFK H092 H6  H 0 0 N N N 4.618  13.548 26.711 4.090  4.415  0.595  H092 YFK 38 
YFK H101 H7  H 0 0 N N N 6.039  12.034 27.530 4.863  2.617  -1.721 H101 YFK 39 
YFK H102 H8  H 0 0 N N N 7.119  13.469 27.510 3.281  2.780  -0.888 H102 YFK 40 
YFK H131 H9  H 0 0 N N N 7.953  10.134 29.663 4.182  -3.340 -2.735 H131 YFK 41 
YFK H1   H10 H 0 1 N N N 8.563  8.370  29.770 3.057  -2.668 -1.400 H1   YFK 42 
YFK H141 H12 H 0 0 N N N 12.183 12.632 26.092 0.851  -0.673 1.200  H141 YFK 43 
YFK H151 H13 H 0 0 N N N 12.742 13.531 28.975 -0.188 -2.965 1.081  H151 YFK 44 
YFK H152 H14 H 0 0 N N N 12.938 11.852 28.367 0.529  -3.161 -0.536 H152 YFK 45 
YFK H161 H15 H 0 0 N N N 14.433 14.264 27.206 2.793  -2.712 0.488  H161 YFK 46 
YFK H172 H16 H 0 0 N N N 15.935 12.516 26.254 3.010  -2.811 2.931  H172 YFK 47 
YFK H173 H17 H 0 0 N N N 14.895 11.238 26.970 1.911  -1.483 2.486  H173 YFK 48 
YFK H171 H18 H 0 0 N N N 14.242 12.313 25.688 1.250  -3.016 3.103  H171 YFK 49 
YFK H182 H19 H 0 0 N N N 15.066 13.941 29.614 1.985  -5.021 0.083  H182 YFK 50 
YFK H181 H20 H 0 0 N N N 15.445 12.218 29.275 2.981  -4.942 1.556  H181 YFK 51 
YFK H183 H21 H 0 0 N N N 16.418 13.519 28.509 1.208  -5.030 1.684  H183 YFK 52 
YFK H251 H22 H 0 0 N N N 9.541  19.379 22.631 -5.292 0.307  -3.280 H251 YFK 53 
YFK H261 H23 H 0 0 N N N 10.268 21.716 23.074 -7.618 0.936  -2.830 H261 YFK 54 
YFK H2   H24 H 0 1 N N N 9.641  8.664  27.514 5.240  -1.205 -2.920 H2   YFK 55 
YFK H221 H26 H 0 0 N N N 12.506 17.398 26.776 -4.061 0.278  2.039  H221 YFK 56 
YFK H271 H27 H 0 0 N N N 11.807 22.205 24.966 -8.402 1.265  -0.523 H271 YFK 57 
YFK H303 H28 H 0 0 N N N 14.169 21.678 27.584 -8.957 0.592  1.378  H303 YFK 58 
YFK H301 H29 H 0 0 N N N 14.136 21.755 25.790 -8.537 1.487  2.859  H301 YFK 59 
YFK H302 H30 H 0 0 N N N 12.777 22.441 26.743 -8.509 2.312  1.281  H302 YFK 60 
YFK H031 H31 H 0 0 N N N 10.661 10.892 26.409 3.243  -0.946 0.510  H031 YFK 61 
YFK H081 H32 H 0 0 N N N 4.563  12.784 24.197 6.644  4.066  1.251  H081 YFK 62 
YFK H191 H33 H 0 0 N N N 12.165 15.254 27.385 -0.852 -0.662 -1.185 H191 YFK 63 
YFK H311 H34 H 0 0 N N N 9.941  16.690 23.561 -2.833 -0.257 -1.917 H311 YFK 64 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YFK C25 C26  DOUB Y N 1  
YFK C25 C24  SING Y N 2  
YFK O11 C07  DOUB N N 3  
YFK C26 C27  SING Y N 4  
YFK N31 C24  SING Y N 5  
YFK N31 C21  SING Y N 6  
YFK C24 C23  DOUB Y N 7  
YFK C07 N08  SING N N 8  
YFK C07 C06  SING N N 9  
YFK C27 C28  DOUB Y N 10 
YFK O32 C20  DOUB N N 11 
YFK N08 C09  SING N N 12 
YFK C21 C20  SING N N 13 
YFK C21 C22  DOUB Y N 14 
YFK C23 C28  SING Y N 15 
YFK C23 C22  SING Y N 16 
YFK C20 N19  SING N N 17 
YFK C28 O29  SING N N 18 
YFK C06 C05  SING N N 19 
YFK C06 C10  SING N N 20 
YFK C09 C10  SING N N 21 
YFK C05 C04  SING N N 22 
YFK C17 C16  SING N N 23 
YFK O29 C30  SING N N 24 
YFK N19 C14  SING N N 25 
YFK C14 C02  SING N N 26 
YFK C14 C15  SING N N 27 
YFK N03 C04  SING N N 28 
YFK N03 C02  SING N N 29 
YFK C04 C12  SING N N 30 
YFK C02 O01  DOUB N N 31 
YFK C16 C15  SING N N 32 
YFK C16 C18  SING N N 33 
YFK C12 C13  DOUB N N 34 
YFK C04 H041 SING N N 35 
YFK C05 H051 SING N N 36 
YFK C05 H052 SING N N 37 
YFK C06 H061 SING N N 38 
YFK C09 H091 SING N N 39 
YFK C09 H092 SING N N 40 
YFK C10 H101 SING N N 41 
YFK C10 H102 SING N N 42 
YFK C13 H131 SING N N 43 
YFK C13 H1   SING N N 44 
YFK C14 H141 SING N N 45 
YFK C15 H151 SING N N 46 
YFK C15 H152 SING N N 47 
YFK C16 H161 SING N N 48 
YFK C17 H172 SING N N 49 
YFK C17 H173 SING N N 50 
YFK C17 H171 SING N N 51 
YFK C18 H182 SING N N 52 
YFK C18 H181 SING N N 53 
YFK C18 H183 SING N N 54 
YFK C25 H251 SING N N 55 
YFK C26 H261 SING N N 56 
YFK C12 H2   SING N N 57 
YFK C22 H221 SING N N 58 
YFK C27 H271 SING N N 59 
YFK C30 H303 SING N N 60 
YFK C30 H301 SING N N 61 
YFK C30 H302 SING N N 62 
YFK N03 H031 SING N N 63 
YFK N08 H081 SING N N 64 
YFK N19 H191 SING N N 65 
YFK N31 H311 SING N N 66 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YFK SMILES           ACDLabs              12.01 "COc1cccc2[NH]c(cc12)C(=O)NC(CC(C)C)C(=O)NC(CC1CCNC1=O)C=C"                                                                                                                                            
YFK InChI            InChI                1.06  "InChI=1S/C24H32N4O4/c1-5-16(12-15-9-10-25-22(15)29)26-23(30)19(11-14(2)3)28-24(31)20-13-17-18(27-20)7-6-8-21(17)32-4/h5-8,13-16,19,27H,1,9-12H2,2-4H3,(H,25,29)(H,26,30)(H,28,31)/t15-,16+,19-/m0/s1" 
YFK InChIKey         InChI                1.06  UWAHXCKRRCFZCB-FCEWJHQRSA-N                                                                                                                                                                            
YFK SMILES_CANONICAL CACTVS               3.385 "COc1cccc2[nH]c(cc12)C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](C[C@@H]3CCNC3=O)C=C"                                                                                                                             
YFK SMILES           CACTVS               3.385 "COc1cccc2[nH]c(cc12)C(=O)N[CH](CC(C)C)C(=O)N[CH](C[CH]3CCNC3=O)C=C"                                                                                                                                   
YFK SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCNC1=O)C=C)NC(=O)c2cc3c([nH]2)cccc3OC"                                                                                                                             
YFK SMILES           "OpenEye OEToolkits" 2.0.7 "CC(C)CC(C(=O)NC(CC1CCNC1=O)C=C)NC(=O)c2cc3c([nH]2)cccc3OC"                                                                                                                                            
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
YFK "SYSTEMATIC NAME" ACDLabs              12.01 "4-methoxy-N-[(2S)-4-methyl-1-oxo-1-({(2S)-1-[(3S)-2-oxopyrrolidin-3-yl]but-3-en-2-yl}amino)pentan-2-yl]-1H-indole-2-carboxamide"                                    
YFK "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "4-methoxy-~{N}-[(2~{S})-4-methyl-1-oxidanylidene-1-[[(2~{S})-1-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]but-3-en-2-yl]amino]pentan-2-yl]-1~{H}-indole-2-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YFK "Create component" 2023-01-26 RCSB 
YFK "Initial release"  2023-08-30 RCSB 
# 
