data_YDK
# 
_chem_comp.id                                    YDK 
_chem_comp.name                                  "2-(CARBAMOYLAMINO)-5-PHENYL-N-[(3S)-PIPERIDIN-3-YL]THIOPHENE-3-CARBOXAMIDE" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C17 H20 N4 O2 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2011-03-22 
_chem_comp.pdbx_modified_date                    2012-03-30 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        344.431 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YDK 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        2YDK 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YDK S01  S01  S 0 1 Y N N 1.259  71.941 10.000 2.434  -1.195 -0.022 S01  YDK 1  
YDK C02  C02  C 0 1 Y N N 2.736  72.825 9.766  0.781  -1.609 0.063  C02  YDK 2  
YDK C03  C03  C 0 1 Y N N 2.935  73.813 10.718 0.006  -0.476 0.110  C03  YDK 3  
YDK C04  C04  C 0 1 Y N N 1.845  73.832 11.634 0.742  0.711  0.078  C04  YDK 4  
YDK C05  C05  C 0 1 Y N N 0.861  72.896 11.385 2.068  0.522  0.007  C05  YDK 5  
YDK N06  N06  N 0 1 N N N 3.599  72.515 8.714  0.291  -2.904 0.081  N06  YDK 6  
YDK C07  C07  C 0 1 N N N 3.374  71.433 7.907  1.142  -3.948 0.030  C07  YDK 7  
YDK N08  N08  N 0 1 N N N 4.436  71.059 7.128  0.665  -5.208 0.048  N08  YDK 8  
YDK O09  O09  O 0 1 N N N 2.318  70.844 7.868  2.341  -3.753 -0.032 O09  YDK 9  
YDK C10  C10  C 0 1 N N N 4.122  74.662 10.722 -1.459 -0.510 0.187  C10  YDK 10 
YDK O11  O11  O 0 1 N N N 5.004  74.543 9.899  -2.042 -1.578 0.212  O11  YDK 11 
YDK N12  N12  N 0 1 N N N 4.228  75.583 11.729 -2.158 0.641  0.230  N12  YDK 12 
YDK C13  C13  C 0 1 N N S 5.524  76.143 12.057 -3.620 0.608  0.307  C13  YDK 13 
YDK C14  C14  C 0 1 N N N 6.217  75.234 13.039 -4.203 0.479  -1.102 C14  YDK 14 
YDK N15  N15  N 0 1 N N N 7.524  75.819 13.451 -5.670 0.466  -1.027 N15  YDK 15 
YDK C16  C16  C 0 1 N N N 7.404  77.160 14.099 -6.183 1.719  -0.459 C16  YDK 16 
YDK C17  C17  C 0 1 N N N 6.758  78.083 13.080 -5.659 1.886  0.970  C17  YDK 17 
YDK C18  C18  C 0 1 N N N 5.404  77.562 12.619 -4.128 1.903  0.948  C18  YDK 18 
YDK C19  C19  C 0 1 Y N N -0.374 72.628 12.114 3.075  1.603  -0.040 C19  YDK 19 
YDK C20  C20  C 0 1 Y N N -0.810 73.435 13.144 4.434  1.292  -0.113 C20  YDK 20 
YDK C21  C21  C 0 1 Y N N -1.988 73.163 13.824 5.369  2.306  -0.156 C21  YDK 21 
YDK C22  C22  C 0 1 Y N N -2.724 72.057 13.454 4.962  3.628  -0.126 C22  YDK 22 
YDK C23  C23  C 0 1 Y N N -2.300 71.237 12.427 3.616  3.943  -0.053 C23  YDK 23 
YDK C24  C24  C 0 1 Y N N -1.129 71.528 11.766 2.671  2.939  -0.016 C24  YDK 24 
YDK H06  H06  H 0 1 N N N 4.397  73.094 8.547  -0.665 -3.060 0.130  H06  YDK 25 
YDK H04  H04  H 0 1 N N N 1.792  74.525 12.460 0.286  1.689  0.107  H04  YDK 26 
YDK H081 H081 H 0 0 N N N 4.350  70.281 6.506  -0.291 -5.364 0.097  H081 YDK 27 
YDK H082 H082 H 0 0 N N N 5.297  71.564 7.181  1.277  -5.959 0.011  H082 YDK 28 
YDK H12  H12  H 0 1 N N N 3.415  75.868 12.236 -1.692 1.492  0.211  H12  YDK 29 
YDK H13  H13  H 0 1 N N N 6.120  76.216 11.135 -3.933 -0.244 0.910  H13  YDK 30 
YDK H141 H141 H 0 0 N N N 5.581  75.109 13.927 -3.878 1.324  -1.708 H141 YDK 31 
YDK H142 H142 H 0 0 N N N 6.391  74.256 12.566 -3.855 -0.449 -1.555 H142 YDK 32 
YDK H181 H181 H 0 0 N N N 5.014  78.226 11.833 -3.750 1.978  1.967  H181 YDK 33 
YDK H182 H182 H 0 0 N N N 4.715  77.550 13.476 -3.782 2.757  0.366  H182 YDK 34 
YDK H15  H15  H 0 1 N N N 7.951  75.195 14.105 -6.076 0.287  -1.933 H15  YDK 35 
YDK H161 H161 H 0 0 N N N 6.782  77.094 15.004 -5.848 2.559  -1.068 H161 YDK 36 
YDK H162 H162 H 0 0 N N N 8.397  77.538 14.383 -7.273 1.692  -0.445 H162 YDK 37 
YDK H171 H171 H 0 0 N N N 6.616  79.072 13.541 -6.028 2.823  1.386  H171 YDK 38 
YDK H172 H172 H 0 0 N N N 7.421  78.161 12.206 -6.005 1.054  1.583  H172 YDK 39 
YDK H20  H20  H 0 1 N N N -0.222 74.296 13.427 4.753  0.261  -0.135 H20  YDK 40 
YDK H24  H24  H 0 1 N N N -0.797 70.886 10.964 1.621  3.186  0.036  H24  YDK 41 
YDK H21  H21  H 0 1 N N N -2.322 73.804 14.627 6.420  2.067  -0.212 H21  YDK 42 
YDK H22  H22  H 0 1 N N N -3.643 71.829 13.974 5.698  4.418  -0.159 H22  YDK 43 
YDK H23  H23  H 0 1 N N N -2.884 70.373 12.145 3.306  4.977  -0.029 H23  YDK 44 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YDK S01 C02  SING Y N 1  
YDK S01 C05  SING Y N 2  
YDK C02 C03  DOUB Y N 3  
YDK C02 N06  SING N N 4  
YDK C03 C04  SING Y N 5  
YDK C03 C10  SING N N 6  
YDK C04 C05  DOUB Y N 7  
YDK C05 C19  SING Y N 8  
YDK N06 C07  SING N N 9  
YDK C07 N08  SING N N 10 
YDK C07 O09  DOUB N N 11 
YDK C10 O11  DOUB N N 12 
YDK C10 N12  SING N N 13 
YDK N12 C13  SING N N 14 
YDK C13 C14  SING N N 15 
YDK C13 C18  SING N N 16 
YDK C14 N15  SING N N 17 
YDK N15 C16  SING N N 18 
YDK C16 C17  SING N N 19 
YDK C17 C18  SING N N 20 
YDK C19 C20  SING Y N 21 
YDK C19 C24  DOUB Y N 22 
YDK C20 C21  DOUB Y N 23 
YDK C21 C22  SING Y N 24 
YDK C22 C23  DOUB Y N 25 
YDK C23 C24  SING Y N 26 
YDK N06 H06  SING N N 27 
YDK C04 H04  SING N N 28 
YDK N08 H081 SING N N 29 
YDK N08 H082 SING N N 30 
YDK N12 H12  SING N N 31 
YDK C13 H13  SING N N 32 
YDK C14 H141 SING N N 33 
YDK C14 H142 SING N N 34 
YDK C18 H181 SING N N 35 
YDK C18 H182 SING N N 36 
YDK N15 H15  SING N N 37 
YDK C16 H161 SING N N 38 
YDK C16 H162 SING N N 39 
YDK C17 H171 SING N N 40 
YDK C17 H172 SING N N 41 
YDK C20 H20  SING N N 42 
YDK C24 H24  SING N N 43 
YDK C21 H21  SING N N 44 
YDK C22 H22  SING N N 45 
YDK C23 H23  SING N N 46 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YDK SMILES           ACDLabs              12.01 "O=C(Nc2sc(cc2C(=O)NC1CCCNC1)c3ccccc3)N"                                                                                                                       
YDK SMILES_CANONICAL CACTVS               3.370 "NC(=O)Nc1sc(cc1C(=O)N[C@H]2CCCNC2)c3ccccc3"                                                                                                                   
YDK SMILES           CACTVS               3.370 "NC(=O)Nc1sc(cc1C(=O)N[CH]2CCCNC2)c3ccccc3"                                                                                                                    
YDK SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "c1ccc(cc1)c2cc(c(s2)NC(=O)N)C(=O)N[C@H]3CCCNC3"                                                                                                               
YDK SMILES           "OpenEye OEToolkits" 1.7.0 "c1ccc(cc1)c2cc(c(s2)NC(=O)N)C(=O)NC3CCCNC3"                                                                                                                   
YDK InChI            InChI                1.03  "InChI=1S/C17H20N4O2S/c18-17(23)21-16-13(15(22)20-12-7-4-8-19-10-12)9-14(24-16)11-5-2-1-3-6-11/h1-3,5-6,9,12,19H,4,7-8,10H2,(H,20,22)(H3,18,21,23)/t12-/m0/s1" 
YDK InChIKey         InChI                1.03  UXZRCIBKIDILEF-LBPRGKRZSA-N                                                                                                                                    
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
YDK "SYSTEMATIC NAME" ACDLabs              12.01 "2-(carbamoylamino)-5-phenyl-N-[(3S)-piperidin-3-yl]thiophene-3-carboxamide"     
YDK "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "2-(aminocarbonylamino)-5-phenyl-N-[(3S)-piperidin-3-yl]thiophene-3-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YDK "Create component"     2011-03-22 EBI  
YDK "Modify aromatic_flag" 2011-06-04 RCSB 
YDK "Modify descriptor"    2011-06-04 RCSB 
# 
