data_YBK
# 
_chem_comp.id                                    YBK 
_chem_comp.name                                  "8-methoxy-3-methyl-N-{(2S)-3,3,3-trifluoro-2-[5-fluoro-6-(4-fluorophenyl)-4-(2-hydroxypropan-2-yl)pyridin-2-yl]-2-hydroxypropyl}cinnoline-6-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C28 H25 F5 N4 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-01-23 
_chem_comp.pdbx_modified_date                    2023-10-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        576.515 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YBK 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8FU3 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YBK C10 C1  C 0 1 N N N 134.654 131.825 101.342 9.509  2.949  -0.000 C10 YBK 1  
YBK N12 N1  N 0 1 Y N N 133.492 128.224 101.030 7.891  -0.328 -0.173 N12 YBK 2  
YBK C13 C2  C 0 1 Y N N 133.820 127.893 99.722  6.580  -0.076 -0.160 C13 YBK 3  
YBK C17 C3  C 0 1 N N N 136.107 127.402 93.505  0.078  0.090  -0.149 C17 YBK 4  
YBK C20 C4  C 0 1 Y N N 137.712 126.768 91.723  -2.185 -0.923 -0.201 C20 YBK 5  
YBK C21 C5  C 0 1 Y N N 139.032 126.820 91.264  -3.092 -1.965 -0.257 C21 YBK 6  
YBK C22 C6  C 0 1 Y N N 139.284 127.028 89.862  -4.451 -1.688 -0.242 C22 YBK 7  
YBK C28 C7  C 0 1 Y N N 135.443 126.432 87.722  -3.544 2.970  0.697  C28 YBK 8  
YBK C01 C8  C 0 1 N N N 132.722 124.294 99.565  5.013  -3.408 -0.334 C01 YBK 9  
YBK O02 O1  O 0 1 N N N 132.925 125.613 100.024 6.033  -2.409 -0.282 O02 YBK 10 
YBK C03 C9  C 0 1 Y N N 133.533 126.577 99.190  5.627  -1.115 -0.214 C03 YBK 11 
YBK C04 C10 C 0 1 Y N N 133.871 126.309 97.841  4.296  -0.817 -0.198 C04 YBK 12 
YBK C05 C11 C 0 1 Y N N 134.463 127.295 97.062  3.855  0.515  -0.128 C05 YBK 13 
YBK C06 C12 C 0 1 Y N N 134.741 128.570 97.571  4.768  1.557  -0.073 C06 YBK 14 
YBK C07 C13 C 0 1 Y N N 134.401 128.860 98.921  6.139  1.271  -0.089 C07 YBK 15 
YBK C08 C14 C 0 1 Y N N 134.677 130.170 99.436  7.114  2.286  -0.035 C08 YBK 16 
YBK C09 C15 C 0 1 Y N N 134.351 130.442 100.780 8.426  1.903  -0.056 C09 YBK 17 
YBK N11 N2  N 0 1 Y N N 133.788 129.490 101.536 8.756  0.620  -0.123 N11 YBK 18 
YBK C14 C16 C 0 1 N N N 134.805 126.996 95.600  2.406  0.808  -0.112 C14 YBK 19 
YBK O15 O2  O 0 1 N N N 134.228 126.111 95.069  2.019  1.959  -0.050 O15 YBK 20 
YBK N16 N3  N 0 1 N N N 135.854 127.738 94.903  1.514  -0.201 -0.165 N16 YBK 21 
YBK C18 C17 C 0 1 N N S 137.369 126.564 93.233  -0.708 -1.221 -0.218 C18 YBK 22 
YBK O19 O3  O 0 1 N N N 138.386 127.069 94.017  -0.376 -1.913 -1.424 O19 YBK 23 
YBK C23 C18 C 0 1 Y N N 138.174 127.177 89.029  -4.854 -0.363 -0.171 C23 YBK 24 
YBK C25 C19 C 0 1 Y N N 136.873 127.105 89.569  -3.884 0.638  -0.118 C25 YBK 25 
YBK N26 N4  N 0 1 Y N N 136.705 126.913 90.879  -2.594 0.328  -0.140 N26 YBK 26 
YBK C27 C20 C 0 1 Y N N 135.709 127.250 88.814  -4.297 2.061  -0.043 C27 YBK 27 
YBK C29 C21 C 0 1 Y N N 134.267 126.595 86.990  -3.935 4.291  0.769  C29 YBK 28 
YBK C30 C22 C 0 1 Y N N 133.378 127.611 87.346  -5.076 4.714  0.106  C30 YBK 29 
YBK C32 C23 C 0 1 Y N N 133.636 128.434 88.432  -5.828 3.814  -0.632 C32 YBK 30 
YBK C33 C24 C 0 1 Y N N 134.804 128.276 89.166  -5.441 2.492  -0.713 C33 YBK 31 
YBK C34 C25 C 0 1 N N N 140.738 127.093 89.292  -5.466 -2.800 -0.301 C34 YBK 32 
YBK C35 C26 C 0 1 N N N 141.682 126.281 90.184  -6.342 -2.758 0.953  C35 YBK 33 
YBK C36 C27 C 0 1 N N N 141.145 128.568 89.171  -6.343 -2.625 -1.542 C36 YBK 34 
YBK O37 O4  O 0 1 N N N 140.789 126.531 88.015  -4.790 -4.058 -0.368 O37 YBK 35 
YBK C38 C28 C 0 1 N N N 137.162 125.087 93.503  -0.351 -2.095 0.986  C38 YBK 36 
YBK F24 F1  F 0 1 N N N 138.365 127.385 87.701  -6.168 -0.047 -0.150 F24 YBK 37 
YBK F31 F2  F 0 1 N N N 132.239 127.783 86.655  -5.456 6.009  0.179  F31 YBK 38 
YBK F39 F3  F 0 1 N N N 136.891 124.864 94.809  -1.070 -3.293 0.923  F39 YBK 39 
YBK F40 F4  F 0 1 N N N 138.294 124.426 93.209  1.020  -2.372 0.971  F40 YBK 40 
YBK F41 F5  F 0 1 N N N 136.155 124.610 92.746  -0.677 -1.418 2.166  F41 YBK 41 
YBK H1  H1  H 0 1 N N N 134.342 131.869 102.396 9.771  3.147  1.039  H1  YBK 42 
YBK H2  H2  H 0 1 N N N 135.734 132.021 101.270 10.389 2.590  -0.534 H2  YBK 43 
YBK H3  H3  H 0 1 N N N 134.105 132.584 100.765 9.151  3.867  -0.466 H3  YBK 44 
YBK H4  H4  H 0 1 N N N 136.200 128.343 92.944  -0.176 0.617  0.771  H4  YBK 45 
YBK H5  H5  H 0 1 N N N 135.240 126.837 93.132  -0.177 0.712  -1.007 H5  YBK 46 
YBK H6  H6  H 0 1 N N N 139.854 126.705 91.955  -2.745 -2.987 -0.311 H6  YBK 47 
YBK H7  H7  H 0 1 N N N 136.150 125.667 87.439  -2.657 2.639  1.218  H7  YBK 48 
YBK H8  H8  H 0 1 N N N 132.239 123.701 100.355 4.394  -3.342 0.560  H8  YBK 49 
YBK H9  H9  H 0 1 N N N 132.078 124.311 98.674  4.393  -3.249 -1.217 H9  YBK 50 
YBK H10 H10 H 0 1 N N N 133.691 123.842 99.308  5.472  -4.395 -0.386 H10 YBK 51 
YBK H11 H11 H 0 1 N N N 133.668 125.337 97.417  3.571  -1.616 -0.240 H11 YBK 52 
YBK H12 H12 H 0 1 N N N 135.206 129.320 96.949  4.425  2.579  -0.019 H12 YBK 53 
YBK H13 H13 H 0 1 N N N 135.123 130.929 98.810  6.835  3.328  0.021  H13 YBK 54 
YBK H14 H14 H 0 1 N N N 136.380 128.451 95.367  1.822  -1.119 -0.214 H14 YBK 55 
YBK H15 H15 H 0 1 N N N 138.172 126.942 94.934  -0.576 -1.417 -2.229 H15 YBK 56 
YBK H16 H16 H 0 1 N N N 134.047 125.943 86.158  -3.352 4.995  1.343  H16 YBK 57 
YBK H17 H17 H 0 1 N N N 132.926 129.200 88.708  -6.717 4.148  -1.146 H17 YBK 58 
YBK H18 H18 H 0 1 N N N 135.018 128.931 89.998  -6.028 1.791  -1.288 H18 YBK 59 
YBK H19 H19 H 0 1 N N N 141.670 126.694 91.203  -6.857 -1.799 1.004  H19 YBK 60 
YBK H20 H20 H 0 1 N N N 141.351 125.232 90.210  -7.076 -3.563 0.910  H20 YBK 61 
YBK H21 H21 H 0 1 N N N 142.704 126.333 89.779  -5.718 -2.883 1.837  H21 YBK 62 
YBK H22 H22 H 0 1 N N N 141.115 129.040 90.164  -5.718 -2.655 -2.435 H22 YBK 63 
YBK H23 H23 H 0 1 N N N 142.165 128.635 88.765  -7.076 -3.430 -1.585 H23 YBK 64 
YBK H24 H24 H 0 1 N N N 140.447 129.087 88.497  -6.858 -1.666 -1.491 H24 YBK 65 
YBK H25 H25 H 0 1 N N N 140.541 125.615 88.061  -4.215 -4.236 0.389  H25 YBK 66 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YBK F31 C30 SING N N 1  
YBK C29 C30 DOUB Y N 2  
YBK C29 C28 SING Y N 3  
YBK C30 C32 SING Y N 4  
YBK F24 C23 SING N N 5  
YBK C28 C27 DOUB Y N 6  
YBK O37 C34 SING N N 7  
YBK C32 C33 DOUB Y N 8  
YBK C27 C33 SING Y N 9  
YBK C27 C25 SING N N 10 
YBK C23 C25 DOUB Y N 11 
YBK C23 C22 SING Y N 12 
YBK C36 C34 SING N N 13 
YBK C34 C22 SING N N 14 
YBK C34 C35 SING N N 15 
YBK C25 N26 SING Y N 16 
YBK C22 C21 DOUB Y N 17 
YBK N26 C20 DOUB Y N 18 
YBK C21 C20 SING Y N 19 
YBK C20 C18 SING N N 20 
YBK F41 C38 SING N N 21 
YBK F40 C38 SING N N 22 
YBK C18 C38 SING N N 23 
YBK C18 C17 SING N N 24 
YBK C18 O19 SING N N 25 
YBK C38 F39 SING N N 26 
YBK C17 N16 SING N N 27 
YBK N16 C14 SING N N 28 
YBK O15 C14 DOUB N N 29 
YBK C14 C05 SING N N 30 
YBK C05 C06 DOUB Y N 31 
YBK C05 C04 SING Y N 32 
YBK C06 C07 SING Y N 33 
YBK C04 C03 DOUB Y N 34 
YBK C07 C08 DOUB Y N 35 
YBK C07 C13 SING Y N 36 
YBK C03 C13 SING Y N 37 
YBK C03 O02 SING N N 38 
YBK C08 C09 SING Y N 39 
YBK C01 O02 SING N N 40 
YBK C13 N12 DOUB Y N 41 
YBK C09 C10 SING N N 42 
YBK C09 N11 DOUB Y N 43 
YBK N12 N11 SING Y N 44 
YBK C10 H1  SING N N 45 
YBK C10 H2  SING N N 46 
YBK C10 H3  SING N N 47 
YBK C17 H4  SING N N 48 
YBK C17 H5  SING N N 49 
YBK C21 H6  SING N N 50 
YBK C28 H7  SING N N 51 
YBK C01 H8  SING N N 52 
YBK C01 H9  SING N N 53 
YBK C01 H10 SING N N 54 
YBK C04 H11 SING N N 55 
YBK C06 H12 SING N N 56 
YBK C08 H13 SING N N 57 
YBK N16 H14 SING N N 58 
YBK O19 H15 SING N N 59 
YBK C29 H16 SING N N 60 
YBK C32 H17 SING N N 61 
YBK C33 H18 SING N N 62 
YBK C35 H19 SING N N 63 
YBK C35 H20 SING N N 64 
YBK C35 H21 SING N N 65 
YBK C36 H22 SING N N 66 
YBK C36 H23 SING N N 67 
YBK C36 H24 SING N N 68 
YBK O37 H25 SING N N 69 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YBK SMILES           ACDLabs              12.01 "CC(C)(O)c1cc(nc(c2ccc(F)cc2)c1F)C(O)(CNC(=O)c1cc2cc(C)nnc2c(c1)OC)C(F)(F)F"                                                                                                                        
YBK InChI            InChI                1.06  "InChI=1S/C28H25F5N4O4/c1-14-9-16-10-17(11-20(41-4)23(16)37-36-14)25(38)34-13-27(40,28(31,32)33)21-12-19(26(2,3)39)22(30)24(35-21)15-5-7-18(29)8-6-15/h5-12,39-40H,13H2,1-4H3,(H,34,38)/t27-/m0/s1" 
YBK InChIKey         InChI                1.06  XMOSIGSMKGYOBC-MHZLTWQESA-N                                                                                                                                                                         
YBK SMILES_CANONICAL CACTVS               3.385 "COc1cc(cc2cc(C)nnc12)C(=O)NC[C@](O)(c3cc(c(F)c(n3)c4ccc(F)cc4)C(C)(C)O)C(F)(F)F"                                                                                                                   
YBK SMILES           CACTVS               3.385 "COc1cc(cc2cc(C)nnc12)C(=O)NC[C](O)(c3cc(c(F)c(n3)c4ccc(F)cc4)C(C)(C)O)C(F)(F)F"                                                                                                                    
YBK SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1cc2cc(cc(c2nn1)OC)C(=O)NC[C@](c3cc(c(c(n3)c4ccc(cc4)F)F)C(C)(C)O)(C(F)(F)F)O"                                                                                                                   
YBK SMILES           "OpenEye OEToolkits" 2.0.7 "Cc1cc2cc(cc(c2nn1)OC)C(=O)NCC(c3cc(c(c(n3)c4ccc(cc4)F)F)C(C)(C)O)(C(F)(F)F)O"                                                                                                                      
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
YBK "SYSTEMATIC NAME" ACDLabs              12.01 "8-methoxy-3-methyl-N-{(2S)-3,3,3-trifluoro-2-[5-fluoro-6-(4-fluorophenyl)-4-(2-hydroxypropan-2-yl)pyridin-2-yl]-2-hydroxypropyl}cinnoline-6-carboxamide"                   
YBK "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "8-methoxy-3-methyl-~{N}-[(2~{S})-3,3,3-tris(fluoranyl)-2-[5-fluoranyl-6-(4-fluorophenyl)-4-(2-oxidanylpropan-2-yl)pyridin-2-yl]-2-oxidanyl-propyl]cinnoline-6-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YBK "Create component" 2023-01-23 RCSB 
YBK "Initial release"  2023-11-01 RCSB 
# 
