data_Y9K
# 
_chem_comp.id                                    Y9K 
_chem_comp.name                                  "[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methyl (2R,3S,4S)-2,3,4-trihydroxy-5-[(1R,3S,3aS,13R)-1-hydroxy-10,11-dimethyl-4,6-dioxo-3-([1~1~,2~1~:2~3~,3~1~-terphenyl]-1~4~-yl)-2,3,5,6-tetrahydro-1H-benzo[g]pyrrolo[2,1-e]pteridin-8(4H)-yl]pentyl dihydrogen diphosphate (non-preferred name)" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C48 H51 N9 O16 P2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-01-18 
_chem_comp.pdbx_modified_date                    2024-08-02 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        1071.917 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     Y9K 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8FRI 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
Y9K C4  C1  C 0 1 Y N N N N N -7.161  59.894 82.892 5.358   1.544  1.216  C4  Y9K 1   
Y9K C14 C2  C 0 1 Y N N N N N -4.101  55.086 83.794 6.601   0.692  -2.567 C14 Y9K 2   
Y9K C5  C3  C 0 1 Y N N N N N -7.585  59.193 81.802 5.996   2.538  1.951  C5  Y9K 3   
Y9K C6  C4  C 0 1 Y N N N N N -7.467  59.696 80.529 6.785   2.181  3.040  C6  Y9K 4   
Y9K C11 C5  C 0 1 N N S N N N -7.606  55.866 82.840 6.956   3.827  -0.496 C11 Y9K 5   
Y9K C7  C6  C 0 1 Y N N N N N -6.891  60.916 80.331 6.931   0.853  3.386  C7  Y9K 6   
Y9K C8  C7  C 0 1 N N N N N N -6.737  61.480 78.953 7.788   0.475  4.567  C8  Y9K 7   
Y9K C9  C8  C 0 1 N N R N N N -8.127  57.101 80.835 7.204   4.536  1.836  C9  Y9K 8   
Y9K C10 C9  C 0 1 N N N N N N -7.284  55.953 81.353 8.016   4.122  0.588  C10 Y9K 9   
Y9K C12 C10 C 0 1 Y N N N N N -6.474  55.202 83.581 7.036   2.386  -0.932 C12 Y9K 10  
Y9K C13 C11 C 0 1 Y N N N N N -5.223  55.643 83.226 6.525   2.009  -2.161 C13 Y9K 11  
Y9K N1  N1  N 0 1 N N N N N N -8.179  57.993 81.938 5.871   3.897  1.634  N1  Y9K 12  
Y9K N2  N2  N 0 1 N N N N N N -9.995  56.512 84.576 4.192   5.828  -0.879 N2  Y9K 13  
Y9K C3  C12 C 0 1 Y N N N N N -6.570  61.134 82.711 5.513   0.210  1.567  C3  Y9K 14  
Y9K N3  N3  N 0 1 N N N N N N -8.301  57.796 85.503 3.605   3.572  -1.111 N3  Y9K 15  
Y9K C1  C13 C 0 1 N N N N N N -5.807  62.995 81.236 6.458   -1.581 3.037  C1  Y9K 16  
Y9K C15 C14 C 0 1 Y N N N N N -4.173  54.041 84.690 7.194   -0.257 -1.738 C15 Y9K 17  
Y9K C16 C15 C 0 1 Y N N N N N -2.907  53.489 85.227 7.273   -1.676 -2.167 C16 Y9K 18  
Y9K C17 C16 C 0 1 Y N N N N N -1.860  54.349 85.504 6.760   -2.060 -3.405 C17 Y9K 19  
Y9K C18 C17 C 0 1 Y N N N N N -0.643  53.892 85.952 6.834   -3.380 -3.806 C18 Y9K 20  
Y9K C19 C18 C 0 1 Y N N N N N -0.437  52.545 86.093 7.416   -4.325 -2.985 C19 Y9K 21  
Y9K C2  C19 C 0 1 Y N N N N N -6.441  61.658 81.456 6.295   -0.133 2.654  C2  Y9K 22  
Y9K C20 C20 C 0 1 Y N N N N N -1.438  51.642 85.787 7.933   -3.952 -1.746 C20 Y9K 23  
Y9K C21 C21 C 0 1 Y N N N N N -1.174  50.192 85.941 8.558   -4.969 -0.864 C21 Y9K 24  
Y9K C22 C22 C 0 1 Y N N N N N -2.200  49.287 86.183 8.630   -6.299 -1.273 C22 Y9K 25  
Y9K C23 C23 C 0 1 Y N N N N N -1.927  47.938 86.326 9.214   -7.240 -0.449 C23 Y9K 26  
Y9K C24 C24 C 0 1 Y N N N N N -0.633  47.482 86.236 9.726   -6.866 0.780  C24 Y9K 27  
Y9K C25 C25 C 0 1 Y N N N N N 0.393   48.363 86.009 9.656   -5.547 1.191  C25 Y9K 28  
Y9K C26 C26 C 0 1 Y N N N N N 0.128   49.712 85.870 9.081   -4.596 0.373  C26 Y9K 29  
Y9K C27 C27 C 0 1 Y N N N N N -2.662  52.125 85.329 7.866   -2.623 -1.338 C27 Y9K 30  
Y9K C28 C28 C 0 1 Y N N N N N -5.437  53.567 85.007 7.712   0.129  -0.504 C28 Y9K 31  
Y9K C29 C29 C 0 1 Y N N N N N -6.574  54.125 84.443 7.635   1.450  -0.109 C29 Y9K 32  
Y9K C30 C30 C 0 1 N N S N N N -8.236  57.250 83.176 5.605   4.105  0.197  C30 Y9K 33  
Y9K C31 C31 C 0 1 N N N N N N -9.648  56.810 83.348 5.217   5.534  -0.062 C31 Y9K 34  
Y9K C32 C32 C 0 1 N N N N N N -9.250  56.930 85.611 3.455   4.859  -1.445 C32 Y9K 35  
Y9K C33 C33 C 0 1 N N N N N N -7.929  58.137 84.333 4.556   3.166  -0.310 C33 Y9K 36  
Y9K C34 C34 C 0 1 N N N N N N -6.681  60.001 85.317 3.750   0.862  -0.563 C34 Y9K 37  
Y9K C35 C35 C 0 1 N N S N N N -7.529  61.062 85.939 2.366   0.795  0.087  C35 Y9K 38  
Y9K C36 C36 C 0 1 N N S N N N -6.717  61.910 86.907 1.521   -0.266 -0.620 C36 Y9K 39  
Y9K C37 C37 C 0 1 N N R N N N -7.530  62.617 87.975 0.137   -0.332 0.030  C37 Y9K 40  
Y9K C38 C38 C 0 1 N N N N N N -6.676  63.540 88.804 -0.708  -1.393 -0.677 C38 Y9K 41  
Y9K C39 C39 C 0 1 N N N N N N -6.239  69.805 89.277 -8.328  -2.584 1.339  C39 Y9K 42  
Y9K C40 C40 C 0 1 N N R N N N -6.860  71.143 89.031 -9.196  -1.433 1.854  C40 Y9K 43  
Y9K C41 C41 C 0 1 N N R N N N -6.185  73.194 88.342 -10.700 0.095  0.980  C41 Y9K 44  
Y9K C42 C42 C 0 1 Y N N N N N -3.901  73.815 87.488 -10.728 0.398  -1.525 C42 Y9K 45  
Y9K C43 C43 C 0 1 Y N N N N N -3.649  75.714 88.364 -12.232 1.940  -1.768 C43 Y9K 46  
Y9K C44 C44 C 0 1 Y N N N N N -3.254  76.972 88.821 -13.155 2.915  -2.185 C44 Y9K 47  
Y9K C45 C45 C 0 1 Y N N N N N -5.257  77.081 89.927 -13.736 3.260  0.022  C45 Y9K 48  
Y9K C46 C46 C 0 1 Y N N N N N -4.874  75.272 88.771 -12.121 1.677  -0.393 C46 Y9K 49  
Y9K C47 C47 C 0 1 N N R N N N -6.581  72.495 87.065 -11.561 -1.141 1.344  C47 Y9K 50  
Y9K C48 C48 C 0 1 N N S N N N -7.403  71.346 87.623 -10.593 -1.960 2.233  C48 Y9K 51  
Y9K N4  N4  N 0 1 N N N N N N -7.308  59.324 84.166 4.559   1.878  0.114  N4  Y9K 52  
Y9K N5  N5  N 0 1 Y N N N N N -5.028  74.047 88.209 -11.165 0.701  -0.270 N5  Y9K 53  
Y9K N6  N6  N 0 1 Y N N N N N -3.045  74.786 87.550 -11.355 1.125  -2.403 N6  Y9K 54  
Y9K N7  N7  N 0 1 N N N N N N -2.099  77.535 88.521 -13.309 3.216  -3.527 N7  Y9K 55  
Y9K N8  N8  N 0 1 Y N N N N N -4.094  77.640 89.618 -13.876 3.541  -1.261 N8  Y9K 56  
Y9K N9  N9  N 0 1 Y N N N N N -5.740  75.917 89.551 -12.885 2.355  0.458  N9  Y9K 57  
Y9K O1  O1  O 0 1 N N N N N N -9.431  56.685 80.625 7.074   5.958  1.898  O1  Y9K 58  
Y9K O10 O2  O 0 1 N N N N N N -6.110  66.761 89.418 -4.516  -2.155 0.239  O10 Y9K 59  
Y9K O11 O3  O 0 1 N N N N N N -5.827  67.916 87.280 -6.262  -3.706 -0.721 O11 Y9K 60  
Y9K O12 O4  O 0 1 N N N N N N -8.027  66.841 87.956 -5.472  -4.170 1.631  O12 Y9K 61  
Y9K O13 O5  O 0 1 N N N N N N -7.234  68.826 89.055 -7.005  -2.106 1.084  O13 Y9K 62  
Y9K O14 O6  O 0 1 N N N N N N -5.849  72.145 89.185 -9.375  -0.454 0.817  O14 Y9K 63  
Y9K O15 O7  O 0 1 N N N N N N -7.349  73.348 86.261 -12.724 -0.754 2.079  O15 Y9K 64  
Y9K O16 O8  O 0 1 N N N N N N -8.765  71.687 87.710 -10.860 -1.721 3.616  O16 Y9K 65  
Y9K O2  O9  O 0 1 N N N N N N -10.410 56.695 82.424 5.836   6.430  0.472  O2  Y9K 66  
Y9K O3  O10 O 0 1 N N N N N N -9.506  56.493 86.692 2.628   5.159  -2.286 O3  Y9K 67  
Y9K O4  O11 O 0 1 N N N N N N -7.905  61.898 84.932 2.504   0.453  1.467  O4  Y9K 68  
Y9K O5  O12 O 0 1 N N N N N N -5.838  61.093 87.566 1.383   0.077  -2.000 O5  Y9K 69  
Y9K O6  O13 O 0 1 N N N N N N -8.529  63.372 87.318 0.275   -0.675 1.410  O6  Y9K 70  
Y9K O7  O14 O 0 1 N N N N N N -7.367  64.694 89.297 -2.036  -1.375 -0.148 O7  Y9K 71  
Y9K O8  O15 O 0 1 N N N N N N -5.454  64.863 90.791 -2.739  -3.766 -0.549 O8  Y9K 72  
Y9K O9  O16 O 0 1 N N N N N N -7.557  66.037 91.321 -3.542  -2.033 -2.200 O9  Y9K 73  
Y9K P1  P1  P 0 1 N N N N N N -6.610  65.593 90.316 -3.198  -2.363 -0.662 P1  Y9K 74  
Y9K P2  P2  P 0 1 N N N N N N -6.808  67.556 88.284 -5.824  -3.049 0.531  P2  Y9K 75  
Y9K H1  H1  H 0 1 N N N N N N -3.131  55.481 83.529 6.197   0.398  -3.525 H1  Y9K 76  
Y9K H2  H2  H 0 1 N N N N N N -7.830  59.126 79.686 7.285   2.946  3.616  H2  Y9K 77  
Y9K H3  H3  H 0 1 N N N N N N -8.445  55.157 82.906 7.089   4.490  -1.351 H3  Y9K 78  
Y9K H4  H4  H 0 1 N N N N N N -7.630  62.068 78.695 7.176   0.454  5.468  H4  Y9K 79  
Y9K H5  H5  H 0 1 N N N N N N -5.849  62.129 78.920 8.222   -0.511 4.400  H5  Y9K 80  
Y9K H6  H6  H 0 1 N N N N N N -6.618  60.658 78.232 8.586   1.208  4.686  H6  Y9K 81  
Y9K H7  H7  H 0 1 N N N N N N -7.670  57.557 79.945 7.677   4.156  2.742  H7  Y9K 82  
Y9K H8  H8  H 0 1 N N N N N N -7.553  55.016 80.844 8.602   3.227  0.798  H8  Y9K 83  
Y9K H9  H9  H 0 1 N N N N N N -6.214  56.159 81.201 8.666   4.937  0.270  H9  Y9K 84  
Y9K H10 H10 H 0 1 N N N N N N -5.119  56.432 82.496 6.066   2.746  -2.803 H10 Y9K 85  
Y9K H11 H11 H 0 1 N N N N N N -10.819 55.970 84.743 3.980   6.757  -1.063 H11 Y9K 86  
Y9K H12 H12 H 0 1 N N N N N N -6.210  61.688 83.565 5.019   -0.560 0.993  H12 Y9K 87  
Y9K H14 H14 H 0 1 N N N N N N -6.580  63.777 81.265 5.679   -1.859 3.747  H14 Y9K 88  
Y9K H15 H15 H 0 1 N N N N N N -5.065  63.183 82.026 6.378   -2.204 2.147  H15 Y9K 89  
Y9K H16 H16 H 0 1 N N N N N N -5.310  63.008 80.255 7.436   -1.727 3.496  H16 Y9K 90  
Y9K H17 H17 H 0 1 N N N N N N -2.002  55.410 85.364 6.304   -1.325 -4.052 H17 Y9K 91  
Y9K H18 H18 H 0 1 N N N N N N 0.145   54.590 86.191 6.434   -3.673 -4.766 H18 Y9K 92  
Y9K H19 H19 H 0 1 N N N N N N 0.518   52.185 86.447 7.471   -5.356 -3.304 H19 Y9K 93  
Y9K H20 H20 H 0 1 N N N N N N -3.218  49.639 86.260 8.231   -6.593 -2.232 H20 Y9K 94  
Y9K H21 H21 H 0 1 N N N N N N -2.732  47.242 86.509 9.270   -8.272 -0.765 H21 Y9K 95  
Y9K H22 H22 H 0 1 N N N N N N -0.424  46.428 86.344 10.181  -7.606 1.421  H22 Y9K 96  
Y9K H23 H23 H 0 1 N N N N N N 1.409   48.002 85.939 10.057  -5.260 2.151  H23 Y9K 97  
Y9K H24 H24 H 0 1 N N N N N N 0.943   50.401 85.704 9.031   -3.566 0.692  H24 Y9K 98  
Y9K H25 H25 H 0 1 N N N N N N -3.435  51.426 85.048 8.269   -2.329 -0.380 H25 Y9K 99  
Y9K H26 H26 H 0 1 N N N N N N -5.537  52.749 85.705 8.172   -0.603 0.143  H26 Y9K 100 
Y9K H27 H27 H 0 1 N N N N N N -7.545  53.716 84.679 8.033   1.750  0.849  H27 Y9K 101 
Y9K H29 H29 H 0 1 N N N N N N -6.458  59.244 86.083 4.238   -0.109 -0.477 H29 Y9K 102 
Y9K H30 H30 H 0 1 N N N N N N -5.743  60.464 84.976 3.644   1.123  -1.616 H30 Y9K 103 
Y9K H31 H31 H 0 1 N N N N N N -8.388  60.613 86.459 1.877   1.766  0.001  H31 Y9K 104 
Y9K H32 H32 H 0 1 N N N N N N -6.173  62.670 86.327 2.009   -1.236 -0.534 H32 Y9K 105 
Y9K H33 H33 H 0 1 N N N N N N -7.989  61.864 88.632 -0.352  0.638  -0.056 H33 Y9K 106 
Y9K H34 H34 H 0 1 N N N N N N -6.292  62.974 89.665 -0.740  -1.180 -1.745 H34 Y9K 107 
Y9K H35 H35 H 0 1 N N N N N N -5.834  63.881 88.184 -0.267  -2.377 -0.515 H35 Y9K 108 
Y9K H36 H36 H 0 1 N N N N N N -5.398  69.649 88.586 -8.290  -3.374 2.088  H36 Y9K 109 
Y9K H37 H37 H 0 1 N N N N N N -5.877  69.744 90.314 -8.756  -2.977 0.416  H37 Y9K 110 
Y9K H38 H38 H 0 1 N N N N N N -7.672  71.307 89.755 -8.723  -0.973 2.721  H38 Y9K 111 
Y9K H39 H39 H 0 1 N N N N N N -7.041  73.764 88.732 -10.716 0.826  1.788  H39 Y9K 112 
Y9K H40 H40 H 0 1 N N N N N N -3.735  72.912 86.920 -9.969  -0.336 -1.757 H40 Y9K 113 
Y9K H41 H41 H 0 1 N N N N N N -5.895  77.662 90.577 -14.342 3.792  0.740  H41 Y9K 114 
Y9K H42 H42 H 0 1 N N N N N N -5.693  72.114 86.540 -11.836 -1.701 0.450  H42 Y9K 115 
Y9K H43 H43 H 0 1 N N N N N N -7.245  70.439 87.021 -10.674 -3.023 2.006  H43 Y9K 116 
Y9K H44 H44 H 0 1 N N N N N N -2.037  78.427 88.968 -12.777 2.752  -4.193 H44 Y9K 117 
Y9K H45 H45 H 0 1 N N N N N N -1.351  76.951 88.837 -13.949 3.891  -3.802 H45 Y9K 118 
Y9K H46 H46 H 0 1 N N N N N N -9.900  56.684 81.451 7.916   6.428  1.970  H46 Y9K 119 
Y9K H47 H47 H 0 1 N N N N N N -8.052  66.669 87.022 -5.177  -3.810 2.479  H47 Y9K 120 
Y9K H48 H48 H 0 1 N N N N N N -6.802  74.051 85.932 -13.248 -1.498 2.407  H48 Y9K 121 
Y9K H49 H49 H 0 1 N N N N N N -9.254  70.952 88.061 -11.748 -1.980 3.896  H49 Y9K 122 
Y9K H50 H50 H 0 1 N N N N N N -8.449  62.593 85.283 2.932   -0.401 1.620  H50 Y9K 123 
Y9K H51 H51 H 0 1 N N N N N N -5.322  61.608 88.175 0.955   0.931  -2.153 H51 Y9K 124 
Y9K H52 H52 H 0 1 N N N N N N -9.057  63.828 87.963 0.703   -1.528 1.563  H52 Y9K 125 
Y9K H53 H53 H 0 1 N N N N N N -7.257  65.766 92.181 -3.849  -1.129 -2.349 H53 Y9K 126 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
Y9K C8  C7  SING N N 1   
Y9K C7  C6  DOUB Y N 2   
Y9K C7  C2  SING Y N 3   
Y9K C6  C5  SING Y N 4   
Y9K O1  C9  SING N N 5   
Y9K C9  C10 SING N N 6   
Y9K C9  N1  SING N N 7   
Y9K C1  C2  SING N N 8   
Y9K C10 C11 SING N N 9   
Y9K C2  C3  DOUB Y N 10  
Y9K C5  N1  SING N N 11  
Y9K C5  C4  DOUB Y N 12  
Y9K N1  C30 SING N N 13  
Y9K O2  C31 DOUB N N 14  
Y9K C3  C4  SING Y N 15  
Y9K C11 C30 SING N N 16  
Y9K C11 C12 SING N N 17  
Y9K C4  N4  SING N N 18  
Y9K C30 C31 SING N N 19  
Y9K C30 C33 SING N N 20  
Y9K C13 C12 DOUB Y N 21  
Y9K C13 C14 SING Y N 22  
Y9K C31 N2  SING N N 23  
Y9K C12 C29 SING Y N 24  
Y9K C14 C15 DOUB Y N 25  
Y9K N4  C33 SING N N 26  
Y9K N4  C34 SING N N 27  
Y9K C33 N3  DOUB N N 28  
Y9K C29 C28 DOUB Y N 29  
Y9K N2  C32 SING N N 30  
Y9K C15 C28 SING Y N 31  
Y9K C15 C16 SING N N 32  
Y9K O4  C35 SING N N 33  
Y9K C16 C27 DOUB Y N 34  
Y9K C16 C17 SING Y N 35  
Y9K C34 C35 SING N N 36  
Y9K C27 C20 SING Y N 37  
Y9K N3  C32 SING N N 38  
Y9K C17 C18 DOUB Y N 39  
Y9K C32 O3  DOUB N N 40  
Y9K C20 C21 SING N N 41  
Y9K C20 C19 DOUB Y N 42  
Y9K C26 C21 DOUB Y N 43  
Y9K C26 C25 SING Y N 44  
Y9K C35 C36 SING N N 45  
Y9K C21 C22 SING Y N 46  
Y9K C18 C19 SING Y N 47  
Y9K C25 C24 DOUB Y N 48  
Y9K C22 C23 DOUB Y N 49  
Y9K C24 C23 SING Y N 50  
Y9K O15 C47 SING N N 51  
Y9K C36 O5  SING N N 52  
Y9K C36 C37 SING N N 53  
Y9K C47 C48 SING N N 54  
Y9K C47 C41 SING N N 55  
Y9K O11 P2  DOUB N N 56  
Y9K O6  C37 SING N N 57  
Y9K C42 N6  DOUB Y N 58  
Y9K C42 N5  SING Y N 59  
Y9K N6  C43 SING Y N 60  
Y9K C48 O16 SING N N 61  
Y9K C48 C40 SING N N 62  
Y9K O12 P2  SING N N 63  
Y9K C37 C38 SING N N 64  
Y9K N5  C41 SING N N 65  
Y9K N5  C46 SING Y N 66  
Y9K P2  O13 SING N N 67  
Y9K P2  O10 SING N N 68  
Y9K C41 O14 SING N N 69  
Y9K C43 C46 DOUB Y N 70  
Y9K C43 C44 SING Y N 71  
Y9K N7  C44 SING N N 72  
Y9K C46 N9  SING Y N 73  
Y9K C38 O7  SING N N 74  
Y9K C44 N8  DOUB Y N 75  
Y9K C40 O14 SING N N 76  
Y9K C40 C39 SING N N 77  
Y9K O13 C39 SING N N 78  
Y9K O7  P1  SING N N 79  
Y9K O10 P1  SING N N 80  
Y9K N9  C45 DOUB Y N 81  
Y9K N8  C45 SING Y N 82  
Y9K P1  O8  DOUB N N 83  
Y9K P1  O9  SING N N 84  
Y9K C14 H1  SING N N 85  
Y9K C6  H2  SING N N 86  
Y9K C11 H3  SING N N 87  
Y9K C8  H4  SING N N 88  
Y9K C8  H5  SING N N 89  
Y9K C8  H6  SING N N 90  
Y9K C9  H7  SING N N 91  
Y9K C10 H8  SING N N 92  
Y9K C10 H9  SING N N 93  
Y9K C13 H10 SING N N 94  
Y9K N2  H11 SING N N 95  
Y9K C3  H12 SING N N 96  
Y9K C1  H14 SING N N 97  
Y9K C1  H15 SING N N 98  
Y9K C1  H16 SING N N 99  
Y9K C17 H17 SING N N 100 
Y9K C18 H18 SING N N 101 
Y9K C19 H19 SING N N 102 
Y9K C22 H20 SING N N 103 
Y9K C23 H21 SING N N 104 
Y9K C24 H22 SING N N 105 
Y9K C25 H23 SING N N 106 
Y9K C26 H24 SING N N 107 
Y9K C27 H25 SING N N 108 
Y9K C28 H26 SING N N 109 
Y9K C29 H27 SING N N 110 
Y9K C34 H29 SING N N 111 
Y9K C34 H30 SING N N 112 
Y9K C35 H31 SING N N 113 
Y9K C36 H32 SING N N 114 
Y9K C37 H33 SING N N 115 
Y9K C38 H34 SING N N 116 
Y9K C38 H35 SING N N 117 
Y9K C39 H36 SING N N 118 
Y9K C39 H37 SING N N 119 
Y9K C40 H38 SING N N 120 
Y9K C41 H39 SING N N 121 
Y9K C42 H40 SING N N 122 
Y9K C45 H41 SING N N 123 
Y9K C47 H42 SING N N 124 
Y9K C48 H43 SING N N 125 
Y9K N7  H44 SING N N 126 
Y9K N7  H45 SING N N 127 
Y9K O1  H46 SING N N 128 
Y9K O12 H47 SING N N 129 
Y9K O15 H48 SING N N 130 
Y9K O16 H49 SING N N 131 
Y9K O4  H50 SING N N 132 
Y9K O5  H51 SING N N 133 
Y9K O6  H52 SING N N 134 
Y9K O9  H53 SING N N 135 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
Y9K SMILES           ACDLabs              12.01 "Cc1cc2c(cc1C)N1C(O)CC(c3ccc(cc3)c3cccc(c3)c3ccccc3)C11C(=O)NC(=O)N=C1N2CC(O)C(O)C(O)COP(=O)(O)OP(=O)(O)OCC1OC(n2cnc3c(N)ncnc32)C(O)C1O"                                                                                                                                                                                                                                                                                      
Y9K InChI            InChI                1.06  "InChI=1S/C48H51N9O16P2/c1-24-15-32-33(16-25(24)2)57-37(60)18-31(28-13-11-27(12-14-28)30-10-6-9-29(17-30)26-7-4-3-5-8-26)48(57)45(53-47(65)54-46(48)64)55(32)19-34(58)39(61)35(59)20-70-74(66,67)73-75(68,69)71-21-36-40(62)41(63)44(72-36)56-23-52-38-42(49)50-22-51-43(38)56/h3-17,22-23,31,34-37,39-41,44,58-63H,18-21H2,1-2H3,(H,66,67)(H,68,69)(H2,49,50,51)(H,54,64,65)/t31-,34-,35+,36+,37+,39-,40+,41+,44+,48-/m0/s1" 
Y9K InChIKey         InChI                1.06  KCNKLMOUYDWXNC-ZPVZEHDYSA-N                                                                                                                                                                                                                                                                                                                                                                                                   
Y9K SMILES_CANONICAL CACTVS               3.385 "Cc1cc2N(C[C@H](O)[C@H](O)[C@H](O)CO[P](O)(=O)O[P](O)(=O)OC[C@H]3O[C@H]([C@H](O)[C@@H]3O)n4cnc5c(N)ncnc45)C6=NC(=O)NC(=O)[C@]67[C@@H](C[C@@H](O)N7c2cc1C)c8ccc(cc8)c9cccc(c9)c%10ccccc%10"                                                                                                                                                                                                                                    
Y9K SMILES           CACTVS               3.385 "Cc1cc2N(C[CH](O)[CH](O)[CH](O)CO[P](O)(=O)O[P](O)(=O)OC[CH]3O[CH]([CH](O)[CH]3O)n4cnc5c(N)ncnc45)C6=NC(=O)NC(=O)[C]67[CH](C[CH](O)N7c2cc1C)c8ccc(cc8)c9cccc(c9)c%10ccccc%10"                                                                                                                                                                                                                                                 
Y9K SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1cc2c(cc1C)N3[C@@H](C[C@H]([C@]34C(=O)NC(=O)N=C4N2C[C@@H]([C@@H]([C@@H](COP(=O)(O)OP(=O)(O)OC[C@@H]5[C@H]([C@H]([C@@H](O5)n6cnc7c6ncnc7N)O)O)O)O)O)c8ccc(cc8)c9cccc(c9)c1ccccc1)O"                                                                                                                                                                                                                                         
Y9K SMILES           "OpenEye OEToolkits" 2.0.7 "Cc1cc2c(cc1C)N3C(CC(C34C(=O)NC(=O)N=C4N2CC(C(C(COP(=O)(O)OP(=O)(O)OCC5C(C(C(O5)n6cnc7c6ncnc7N)O)O)O)O)O)c8ccc(cc8)c9cccc(c9)c1ccccc1)O"                                                                                                                                                                                                                                                                                      
# 
_pdbx_chem_comp_identifier.comp_id           Y9K 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           ACDLabs 
_pdbx_chem_comp_identifier.program_version   12.01 
_pdbx_chem_comp_identifier.identifier        "[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methyl (2R,3S,4S)-2,3,4-trihydroxy-5-[(1R,3S,3aS,13R)-1-hydroxy-10,11-dimethyl-4,6-dioxo-3-([1~1~,2~1~:2~3~,3~1~-terphenyl]-1~4~-yl)-2,3,5,6-tetrahydro-1H-benzo[g]pyrrolo[2,1-e]pteridin-8(4H)-yl]pentyl dihydrogen diphosphate (non-preferred name)" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
Y9K "Create component" 2023-01-18 RCSB 
Y9K "Initial release"  2024-08-07 RCSB 
# 
