data_Y1K
# 
_chem_comp.id                                    Y1K 
_chem_comp.name                                  "4-{(1P)-5'-chloro-6-fluoro-4'-methyl-2'-[(4-methyl-5-oxo-4,5-dihydro-1H-1,2,4-triazol-3-yl)methoxy][1,1'-biphenyl]-3-carbonyl}-1-methylpiperazin-2-one" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C23 H23 Cl F N5 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-06-09 
_chem_comp.pdbx_modified_date                    2024-12-13 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        487.911 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     Y1K 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7G7C 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
Y1K C10 C1  C  0 1 Y N N N N N -12.756 4.819  44.316 3.825  -0.738 0.650  C10 Y1K 1  
Y1K C11 C2  C  0 1 Y N N N N N -12.926 6.174  43.953 2.563  -0.518 0.122  C11 Y1K 2  
Y1K O12 O1  O  0 1 N N N N N N -13.493 7.126  44.791 2.095  0.750  -0.018 O12 Y1K 3  
Y1K C13 C3  C  0 1 N N N N N N -13.985 6.593  46.028 2.957  1.810  0.400  C13 Y1K 4  
Y1K C16 C4  C  0 1 N N N N N N -14.704 9.545  48.206 1.900  5.307  0.114  C16 Y1K 5  
Y1K C20 C5  C  0 1 N N N N N N -12.376 8.975  47.400 4.127  4.619  1.033  C20 Y1K 6  
Y1K C21 C6  C  0 1 Y N N N N N -12.076 9.096  42.961 0.277  -0.709 -2.051 C21 Y1K 7  
Y1K C23 C7  C  0 1 Y N N N N N -12.273 10.484 42.563 -0.985 -0.497 -2.582 C23 Y1K 8  
Y1K C24 C8  C  0 1 Y N N N N N -13.206 10.743 41.547 -2.104 -0.940 -1.909 C24 Y1K 9  
Y1K C25 C9  C  0 1 N N N N N N -15.054 9.840  40.019 -3.172 -2.074 0.034  C25 Y1K 10 
Y1K C27 C10 C  0 1 N N N N N N -13.695 11.470 38.639 -5.573 -1.892 0.538  C27 Y1K 11 
Y1K C28 C11 C  0 1 N N N N N N -13.846 12.520 37.520 -6.039 -0.894 1.599  C28 Y1K 12 
Y1K C1  C12 C  0 1 Y N N N N N -13.918 9.648  40.980 -1.971 -1.605 -0.688 C1  Y1K 13 
Y1K C2  C13 C  0 1 Y N N N N N -13.677 8.326  41.381 -0.704 -1.821 -0.149 C2  Y1K 14 
Y1K C3  C14 C  0 1 Y N N N N N -12.762 8.040  42.353 0.422  -1.378 -0.834 C3  Y1K 15 
Y1K C4  C15 C  0 1 Y N N N N N -12.501 6.661  42.717 1.774  -1.605 -0.267 C4  Y1K 16 
Y1K C5  C16 C  0 1 Y N N N N N -11.848 5.808  41.827 2.262  -2.900 -0.120 C5  Y1K 17 
Y1K C6  C17 C  0 1 Y N N N N N -11.684 4.492  42.212 3.522  -3.106 0.408  C6  Y1K 18 
Y1K CL7 CL1 CL 0 0 N N N N N N -10.878 3.443  41.096 4.131  -4.721 0.590  CL7 Y1K 19 
Y1K C8  C18 C  0 1 Y N N N N N -12.135 3.972  43.435 4.304  -2.027 0.787  C8  Y1K 20 
Y1K C9  C19 C  0 1 N N N N N N -12.020 2.510  43.795 5.677  -2.261 1.362  C9  Y1K 21 
Y1K C14 C20 C  0 1 N N N N N N -14.579 7.722  46.872 2.273  3.133  0.171  C14 Y1K 22 
Y1K N15 N1  N  0 1 N N N N N N -13.808 8.749  47.469 2.804  4.367  0.456  N15 Y1K 23 
Y1K N17 N2  N  0 1 N N N N N N -15.944 8.943  48.006 0.819  4.667  -0.378 N17 Y1K 24 
Y1K N18 N3  N  0 1 N N N N N N -15.859 7.852  47.196 1.092  3.293  -0.333 N18 Y1K 25 
Y1K O19 O2  O  0 1 N N N N N N -14.456 10.526 48.818 2.033  6.513  0.233  O19 Y1K 26 
Y1K F22 F1  F  0 1 N N N N N N -11.217 8.820  43.944 1.369  -0.272 -2.715 F22 Y1K 27 
Y1K N26 N4  N  0 1 N N N N N N -14.955 10.715 38.962 -4.326 -1.382 -0.056 N26 Y1K 28 
Y1K N29 N5  N  0 1 N N N N N N -15.143 13.209 37.751 -5.983 0.469  1.088  N29 Y1K 29 
Y1K C30 C21 C  0 1 N N N N N N -16.250 12.360 37.625 -5.222 0.863  0.065  C30 Y1K 30 
Y1K C31 C22 C  0 1 N N N N N N -16.135 10.921 38.103 -4.389 -0.088 -0.751 C31 Y1K 31 
Y1K O32 O3  O  0 1 N N N N N N -17.285 12.689 37.106 -5.201 2.041  -0.219 O32 Y1K 32 
Y1K C33 C23 C  0 1 N N N N N N -15.224 14.612 37.235 -6.821 1.477  1.741  C33 Y1K 33 
Y1K O34 O4  O  0 1 N N N N N N -16.101 9.153  40.114 -3.120 -3.084 0.709  O34 Y1K 34 
Y1K H40 H1  H  0 1 N N N N N N -13.109 4.457  45.270 4.437  0.099  0.951  H40 Y1K 35 
Y1K H42 H2  H  0 1 N N N N N N -14.762 5.843  45.820 3.184  1.697  1.460  H42 Y1K 36 
Y1K H41 H3  H  0 1 N N N N N N -13.158 6.121  46.578 3.882  1.775  -0.175 H41 Y1K 37 
Y1K H44 H4  H  0 1 N N N N N N -12.117 9.869  47.985 4.859  4.726  0.232  H44 Y1K 38 
Y1K H46 H5  H  0 1 N N N N N N -11.847 8.102  47.811 4.098  5.535  1.623  H46 Y1K 39 
Y1K H45 H6  H  0 1 N N N N N N -12.079 9.124  46.352 4.409  3.784  1.673  H45 Y1K 40 
Y1K H47 H7  H  0 1 N N N N N N -11.721 11.284 43.033 -1.092 0.017  -3.525 H47 Y1K 41 
Y1K H48 H8  H  0 1 N N N N N N -13.380 11.752 41.202 -3.086 -0.772 -2.328 H48 Y1K 42 
Y1K H49 H9  H  0 1 N N N N N N -13.361 11.986 39.551 -5.391 -2.862 1.000  H49 Y1K 43 
Y1K H50 H10 H  0 1 N N N N N N -12.930 10.744 38.327 -6.336 -1.990 -0.235 H50 Y1K 44 
Y1K H51 H11 H  0 1 N N N N N N -13.019 13.244 37.566 -7.065 -1.127 1.886  H51 Y1K 45 
Y1K H52 H12 H  0 1 N N N N N N -13.848 12.028 36.536 -5.396 -0.975 2.475  H52 Y1K 46 
Y1K H35 H13 H  0 1 N N N N N N -14.224 7.521  40.913 -0.597 -2.335 0.795  H35 Y1K 47 
Y1K H36 H14 H  0 1 N N N N N N -11.485 6.163  40.874 1.657  -3.743 -0.418 H36 Y1K 48 
Y1K H37 H15 H  0 1 N N N N N N -11.072 2.336  44.325 6.410  -2.277 0.555  H37 Y1K 49 
Y1K H38 H16 H  0 1 N N N N N N -12.861 2.225  44.444 5.920  -1.459 2.058  H38 Y1K 50 
Y1K H39 H17 H  0 1 N N N N N N -12.044 1.904  42.878 5.694  -3.216 1.887  H39 Y1K 51 
Y1K H43 H18 H  0 1 N N N N N N -16.797 9.273  48.410 0.004  5.082  -0.702 H43 Y1K 52 
Y1K H54 H19 H  0 1 N N N N N N -16.055 10.261 37.226 -3.383 0.315  -0.865 H54 Y1K 53 
Y1K H53 H20 H  0 1 N N N N N N -17.039 10.664 38.674 -4.845 -0.222 -1.732 H53 Y1K 54 
Y1K H56 H21 H  0 1 N N N N N N -16.218 15.028 37.456 -6.263 1.940  2.555  H56 Y1K 55 
Y1K H57 H22 H  0 1 N N N N N N -14.453 15.227 37.722 -7.105 2.239  1.016  H57 Y1K 56 
Y1K H55 H23 H  0 1 N N N N N N -15.060 14.613 36.147 -7.717 1.002  2.139  H55 Y1K 57 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
Y1K C1  C2  DOUB Y N 1  
Y1K C1  C24 SING Y N 2  
Y1K C1  C25 SING N N 3  
Y1K C2  C3  SING Y N 4  
Y1K C3  C4  SING N N 5  
Y1K C3  C21 DOUB Y N 6  
Y1K C4  C5  DOUB Y N 7  
Y1K C4  C11 SING Y N 8  
Y1K C5  C6  SING Y N 9  
Y1K C6  CL7 SING N N 10 
Y1K C6  C8  DOUB Y N 11 
Y1K C8  C9  SING N N 12 
Y1K C8  C10 SING Y N 13 
Y1K C10 C11 DOUB Y N 14 
Y1K C11 O12 SING N N 15 
Y1K O12 C13 SING N N 16 
Y1K C13 C14 SING N N 17 
Y1K C14 N15 SING N N 18 
Y1K C14 N18 DOUB N N 19 
Y1K N15 C16 SING N N 20 
Y1K N15 C20 SING N N 21 
Y1K C16 N17 SING N N 22 
Y1K C16 O19 DOUB N N 23 
Y1K N17 N18 SING N N 24 
Y1K C21 F22 SING N N 25 
Y1K C21 C23 SING Y N 26 
Y1K C23 C24 DOUB Y N 27 
Y1K C25 N26 SING N N 28 
Y1K C25 O34 DOUB N N 29 
Y1K N26 C27 SING N N 30 
Y1K N26 C31 SING N N 31 
Y1K C27 C28 SING N N 32 
Y1K C28 N29 SING N N 33 
Y1K N29 C30 SING N N 34 
Y1K N29 C33 SING N N 35 
Y1K C30 C31 SING N N 36 
Y1K C30 O32 DOUB N N 37 
Y1K C10 H40 SING N N 38 
Y1K C13 H42 SING N N 39 
Y1K C13 H41 SING N N 40 
Y1K C20 H44 SING N N 41 
Y1K C20 H46 SING N N 42 
Y1K C20 H45 SING N N 43 
Y1K C23 H47 SING N N 44 
Y1K C24 H48 SING N N 45 
Y1K C27 H49 SING N N 46 
Y1K C27 H50 SING N N 47 
Y1K C28 H51 SING N N 48 
Y1K C28 H52 SING N N 49 
Y1K C2  H35 SING N N 50 
Y1K C5  H36 SING N N 51 
Y1K C9  H37 SING N N 52 
Y1K C9  H38 SING N N 53 
Y1K C9  H39 SING N N 54 
Y1K N17 H43 SING N N 55 
Y1K C31 H54 SING N N 56 
Y1K C31 H53 SING N N 57 
Y1K C33 H56 SING N N 58 
Y1K C33 H57 SING N N 59 
Y1K C33 H55 SING N N 60 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
Y1K SMILES           ACDLabs              12.01 "O=C1CN(CCN1C)C(=O)c1cc(c2cc(Cl)c(C)cc2OCC2=NNC(=O)N2C)c(F)cc1"                                                                                                           
Y1K InChI            InChI                1.06  "InChI=1S/C23H23ClFN5O4/c1-13-8-19(34-12-20-26-27-23(33)29(20)3)16(10-17(13)24)15-9-14(4-5-18(15)25)22(32)30-7-6-28(2)21(31)11-30/h4-5,8-10H,6-7,11-12H2,1-3H3,(H,27,33)" 
Y1K InChIKey         InChI                1.06  BBHMKMJQEYDGCR-UHFFFAOYSA-N                                                                                                                                               
Y1K SMILES_CANONICAL CACTVS               3.385 "CN1CCN(CC1=O)C(=O)c2ccc(F)c(c2)c3cc(Cl)c(C)cc3OCC4=NNC(=O)N4C"                                                                                                           
Y1K SMILES           CACTVS               3.385 "CN1CCN(CC1=O)C(=O)c2ccc(F)c(c2)c3cc(Cl)c(C)cc3OCC4=NNC(=O)N4C"                                                                                                           
Y1K SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1cc(c(cc1Cl)c2cc(ccc2F)C(=O)N3CCN(C(=O)C3)C)OCC4=NNC(=O)N4C"                                                                                                           
Y1K SMILES           "OpenEye OEToolkits" 2.0.7 "Cc1cc(c(cc1Cl)c2cc(ccc2F)C(=O)N3CCN(C(=O)C3)C)OCC4=NNC(=O)N4C"                                                                                                           
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
Y1K "SYSTEMATIC NAME" ACDLabs              12.01 "4-{(1P)-5'-chloro-6-fluoro-4'-methyl-2'-[(4-methyl-5-oxo-4,5-dihydro-1H-1,2,4-triazol-3-yl)methoxy][1,1'-biphenyl]-3-carbonyl}-1-methylpiperazin-2-one" 
Y1K "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "4-[3-[5-chloranyl-4-methyl-2-[(4-methyl-5-oxidanylidene-1~{H}-1,2,4-triazol-3-yl)methoxy]phenyl]-4-fluoranyl-phenyl]carbonyl-1-methyl-piperazin-2-one"  
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
Y1K "Create component" 2023-06-09 RCSB 
Y1K "Initial release"  2024-12-18 RCSB 
# 
