data_Y0K
# 
_chem_comp.id                                    Y0K 
_chem_comp.name                                  "6-[(3aR,6aS)-5-{5-cyclopropyl-6-[(oxan-4-yl)oxy]pyridine-3-carbonyl}hexahydropyrrolo[3,4-c]pyrrole-2(1H)-carbonyl]pyridine-3-sulfonamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C26 H31 N5 O6 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-06-09 
_chem_comp.pdbx_modified_date                    2024-12-13 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        541.619 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     Y0K 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7G6O 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
Y0K C11 C1  C 0 1 N N N N N N -14.557 9.019  46.969 2.463  3.023  -0.072 C11 Y0K 1  
Y0K C15 C2  C 0 1 Y N N N N N -12.199 8.026  44.067 3.580  -0.477 -0.820 C15 Y0K 2  
Y0K C16 C3  C 0 1 Y N N N N N -12.388 6.611  44.253 4.886  -0.398 -0.348 C16 Y0K 3  
Y0K C18 C4  C 0 1 Y N N N N N -13.902 6.910  45.992 4.617  1.811  0.260  C18 Y0K 4  
Y0K C20 C5  C 0 1 N N N N N N -11.353 8.558  42.970 3.058  -1.764 -1.406 C20 Y0K 5  
Y0K C21 C6  C 0 1 N N N N N N -10.761 9.961  43.065 2.577  -1.734 -2.858 C21 Y0K 6  
Y0K C22 C7  C 0 1 N N N N N N -11.898 9.697  42.075 1.562  -1.842 -1.718 C22 Y0K 7  
Y0K C23 C8  C 0 1 N N N N N N -11.687 4.606  42.841 7.020  -1.346 0.081  C23 Y0K 8  
Y0K C24 C9  C 0 1 N N N N N N -12.953 3.878  43.224 7.959  -2.279 -0.691 C24 Y0K 9  
Y0K C25 C10 C 0 1 N N N N N N -12.987 2.647  42.275 9.366  -2.179 -0.097 C25 Y0K 10 
Y0K C27 C11 C 0 1 N N N N N N -10.563 2.407  42.308 8.495  -1.643 2.072  C27 Y0K 11 
Y0K C28 C12 C 0 1 N N N N N N -10.503 3.682  43.193 7.052  -1.721 1.566  C28 Y0K 12 
Y0K N1  N1  N 0 1 N N N N N N -12.077 12.378 50.834 -3.285 2.529  0.178  N1  Y0K 13 
Y0K C2  C13 C 0 1 N N N N N N -13.554 12.301 50.690 -2.514 3.812  0.171  C2  Y0K 14 
Y0K C3  C14 C 0 1 N N N N N N -11.352 11.706 49.724 -2.313 1.415  0.393  C3  Y0K 15 
Y0K C4  C15 C 0 1 N N R N N N -12.498 11.222 48.850 -1.014 2.098  0.675  C4  Y0K 16 
Y0K C5  C16 C 0 1 N N R N N N -13.642 11.019 49.872 -1.137 3.361  -0.269 C5  Y0K 17 
Y0K C6  C17 C 0 1 N N N N N N -14.750 10.599 48.925 0.150  4.046  0.136  C6  Y0K 18 
Y0K N7  N2  N 0 1 N N N N N N -13.949 9.706  47.995 1.133  2.917  0.121  N7  Y0K 19 
Y0K C8  C18 C 0 1 N N N N N N -12.500 9.854  48.186 0.376  1.651  0.359  C8  Y0K 20 
Y0K C12 C19 C 0 1 Y N N N N N -13.766 8.295  45.942 3.293  1.808  -0.181 C12 Y0K 21 
Y0K O13 O1  O 0 1 N N N N N N -15.787 8.999  46.944 2.978  4.121  -0.161 O13 Y0K 22 
Y0K C14 C20 C 0 1 Y N N N N N -12.902 8.869  44.957 2.765  0.634  -0.740 C14 Y0K 23 
Y0K N17 N3  N 0 1 Y N N N N N -13.224 6.081  45.165 5.357  0.726  0.169  N17 Y0K 24 
Y0K O19 O2  O 0 1 N N N N N N -11.536 5.802  43.593 5.689  -1.487 -0.419 O19 Y0K 25 
Y0K O26 O3  O 0 1 N N N N N N -11.824 1.791  42.403 9.320  -2.510 1.293  O26 Y0K 26 
Y0K C29 C21 C 0 1 N N N N N N -11.498 13.249 51.738 -4.618 2.402  0.024  C29 Y0K 27 
Y0K C30 C22 C 0 1 Y N N N N N -10.071 13.023 52.199 -5.243 1.059  0.054  C30 Y0K 28 
Y0K O31 O4  O 0 1 N N N N N N -12.146 14.237 52.169 -5.307 3.389  -0.140 O31 Y0K 29 
Y0K N32 N4  N 0 1 Y N N N N N -9.727  11.826 52.733 -4.485 -0.015 0.233  N32 Y0K 30 
Y0K C33 C23 C 0 1 Y N N N N N -8.428  11.655 53.067 -4.999 -1.225 0.267  C33 Y0K 31 
Y0K C34 C24 C 0 1 Y N N N N N -7.403  12.652 52.899 -6.362 -1.423 0.115  C34 Y0K 32 
Y0K C35 C25 C 0 1 Y N N N N N -7.796  13.876 52.354 -7.191 -0.328 -0.075 C35 Y0K 33 
Y0K C36 C26 C 0 1 Y N N N N N -9.140  14.067 52.002 -6.622 0.935  -0.100 C36 Y0K 34 
Y0K S37 S1  S 0 1 N N N N N N -5.822  12.366 53.335 -7.035 -3.051 0.161  S37 Y0K 35 
Y0K O38 O5  O 0 1 N N N N N N -5.581  13.184 54.452 -8.267 -2.996 -0.545 O38 Y0K 36 
Y0K O39 O6  O 0 1 N N N N N N -4.949  12.374 52.170 -5.977 -3.933 -0.189 O39 Y0K 37 
Y0K N40 N5  N 0 1 N N N N N N -5.976  10.808 53.839 -7.415 -3.379 1.739  N40 Y0K 38 
Y0K H50 H1  H 0 1 N N N N N N -14.575 6.481  46.719 5.034  2.709  0.692  H50 Y0K 39 
Y0K H51 H2  H 0 1 N N N N N N -10.726 7.821  42.447 3.548  -2.672 -1.057 H51 Y0K 40 
Y0K H52 H3  H 0 1 N N N N N N -10.945 10.574 43.960 2.638  -0.784 -3.389 H52 Y0K 41 
Y0K H53 H4  H 0 1 N N N N N N -9.744  10.153 42.692 2.750  -2.624 -3.464 H53 Y0K 42 
Y0K H55 H5  H 0 1 N N N N N N -11.698 9.692  40.993 1.068  -2.803 -1.574 H55 Y0K 43 
Y0K H54 H6  H 0 1 N N N N N N -12.899 10.114 42.261 0.956  -0.964 -1.499 H54 Y0K 44 
Y0K H56 H7  H 0 1 N N N N N N -11.684 4.811  41.760 7.350  -0.315 -0.042 H56 Y0K 45 
Y0K H57 H8  H 0 1 N N N N N N -12.916 3.559  44.276 7.601  -3.305 -0.608 H57 Y0K 46 
Y0K H58 H9  H 0 1 N N N N N N -13.834 4.517  43.065 7.984  -1.984 -1.740 H58 Y0K 47 
Y0K H59 H10 H 0 1 N N N N N N -13.884 2.054  42.505 10.029 -2.873 -0.614 H59 Y0K 48 
Y0K H60 H11 H 0 1 N N N N N N -13.042 3.008  41.237 9.740  -1.162 -0.215 H60 Y0K 49 
Y0K H61 H12 H 0 1 N N N N N N -9.790  1.699  42.642 8.857  -0.618 1.982  H61 Y0K 50 
Y0K H62 H13 H 0 1 N N N N N N -10.376 2.686  41.261 8.530  -1.949 3.118  H62 Y0K 51 
Y0K H64 H14 H 0 1 N N N N N N -9.557  4.212  43.010 6.430  -1.027 2.130  H64 Y0K 52 
Y0K H63 H15 H 0 1 N N N N N N -10.563 3.396  44.253 6.676  -2.736 1.693  H63 Y0K 53 
Y0K H41 H16 H 0 1 N N N N N N -14.060 12.206 51.662 -2.938 4.515  -0.546 H41 Y0K 54 
Y0K H42 H17 H 0 1 N N N N N N -13.962 13.166 50.147 -2.478 4.249  1.169  H42 Y0K 55 
Y0K H44 H18 H 0 1 N N N N N N -10.706 12.413 49.182 -2.616 0.807  1.246  H44 Y0K 56 
Y0K H43 H19 H 0 1 N N N N N N -10.747 10.865 50.093 -2.234 0.801  -0.504 H43 Y0K 57 
Y0K H10 H20 H 0 1 N N N N N N -12.778 11.999 48.123 -1.026 2.455  1.705  H10 Y0K 58 
Y0K H9  H21 H 0 1 N N N N N N -13.385 10.167 50.519 -1.131 3.082  -1.322 H9  Y0K 59 
Y0K H45 H22 H 0 1 N N N N N N -15.546 10.045 49.443 0.427  4.811  -0.589 H45 Y0K 60 
Y0K H46 H23 H 0 1 N N N N N N -15.187 11.459 48.395 0.065  4.472  1.136  H46 Y0K 61 
Y0K H48 H24 H 0 1 N N N N N N -11.954 9.856  47.231 0.802  1.107  1.202  H48 Y0K 62 
Y0K H47 H25 H 0 1 N N N N N N -12.087 9.074  48.843 0.382  1.031  -0.538 H47 Y0K 63 
Y0K H49 H26 H 0 1 N N N N N N -12.788 9.941  44.894 1.747  0.601  -1.099 H49 Y0K 64 
Y0K H65 H27 H 0 1 N N N N N N -8.139  10.704 53.489 -4.351 -2.076 0.415  H65 Y0K 65 
Y0K H66 H28 H 0 1 N N N N N N -7.074  14.666 52.205 -8.256 -0.457 -0.196 H66 Y0K 66 
Y0K H67 H29 H 0 1 N N N N N N -9.462  15.008 51.582 -7.238 1.811  -0.242 H67 Y0K 67 
Y0K H69 H30 H 0 1 N N N N N N -5.087  10.467 54.146 -7.251 -2.715 2.426  H69 Y0K 68 
Y0K H68 H31 H 0 1 N N N N N N -6.629  10.765 54.595 -7.803 -4.236 1.976  H68 Y0K 69 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
Y0K N1  C2  SING N N 1  
Y0K N1  C3  SING N N 2  
Y0K N1  C29 SING N N 3  
Y0K C2  C5  SING N N 4  
Y0K C3  C4  SING N N 5  
Y0K C4  C5  SING N N 6  
Y0K C4  C8  SING N N 7  
Y0K C5  C6  SING N N 8  
Y0K C6  N7  SING N N 9  
Y0K N7  C8  SING N N 10 
Y0K N7  C11 SING N N 11 
Y0K C11 C12 SING N N 12 
Y0K C11 O13 DOUB N N 13 
Y0K C12 C14 DOUB Y N 14 
Y0K C12 C18 SING Y N 15 
Y0K C14 C15 SING Y N 16 
Y0K C15 C16 DOUB Y N 17 
Y0K C15 C20 SING N N 18 
Y0K C16 N17 SING Y N 19 
Y0K C16 O19 SING N N 20 
Y0K N17 C18 DOUB Y N 21 
Y0K O19 C23 SING N N 22 
Y0K C20 C21 SING N N 23 
Y0K C20 C22 SING N N 24 
Y0K C21 C22 SING N N 25 
Y0K C23 C24 SING N N 26 
Y0K C23 C28 SING N N 27 
Y0K C24 C25 SING N N 28 
Y0K C25 O26 SING N N 29 
Y0K O26 C27 SING N N 30 
Y0K C27 C28 SING N N 31 
Y0K C29 C30 SING N N 32 
Y0K C29 O31 DOUB N N 33 
Y0K C30 N32 DOUB Y N 34 
Y0K C30 C36 SING Y N 35 
Y0K N32 C33 SING Y N 36 
Y0K C33 C34 DOUB Y N 37 
Y0K C34 C35 SING Y N 38 
Y0K C34 S37 SING N N 39 
Y0K C35 C36 DOUB Y N 40 
Y0K S37 O38 DOUB N N 41 
Y0K S37 O39 DOUB N N 42 
Y0K S37 N40 SING N N 43 
Y0K C18 H50 SING N N 44 
Y0K C20 H51 SING N N 45 
Y0K C21 H52 SING N N 46 
Y0K C21 H53 SING N N 47 
Y0K C22 H55 SING N N 48 
Y0K C22 H54 SING N N 49 
Y0K C23 H56 SING N N 50 
Y0K C24 H57 SING N N 51 
Y0K C24 H58 SING N N 52 
Y0K C25 H59 SING N N 53 
Y0K C25 H60 SING N N 54 
Y0K C27 H61 SING N N 55 
Y0K C27 H62 SING N N 56 
Y0K C28 H64 SING N N 57 
Y0K C28 H63 SING N N 58 
Y0K C2  H41 SING N N 59 
Y0K C2  H42 SING N N 60 
Y0K C3  H44 SING N N 61 
Y0K C3  H43 SING N N 62 
Y0K C4  H10 SING N N 63 
Y0K C5  H9  SING N N 64 
Y0K C6  H45 SING N N 65 
Y0K C6  H46 SING N N 66 
Y0K C8  H48 SING N N 67 
Y0K C8  H47 SING N N 68 
Y0K C14 H49 SING N N 69 
Y0K C33 H65 SING N N 70 
Y0K C35 H66 SING N N 71 
Y0K C36 H67 SING N N 72 
Y0K N40 H69 SING N N 73 
Y0K N40 H68 SING N N 74 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
Y0K SMILES           ACDLabs              12.01 "NS(=O)(=O)c1ccc(nc1)C(=O)N1CC2CN(CC2C1)C(=O)c1cc(c(nc1)OC1CCOCC1)C1CC1"                                                                                                                             
Y0K InChI            InChI                1.06  "InChI=1S/C26H31N5O6S/c27-38(34,35)21-3-4-23(28-11-21)26(33)31-14-18-12-30(13-19(18)15-31)25(32)17-9-22(16-1-2-16)24(29-10-17)37-20-5-7-36-8-6-20/h3-4,9-11,16,18-20H,1-2,5-8,12-15H2,(H2,27,34,35)" 
Y0K InChIKey         InChI                1.06  IFXXYODLELYUIJ-UHFFFAOYSA-N                                                                                                                                                                          
Y0K SMILES_CANONICAL CACTVS               3.385 "N[S](=O)(=O)c1ccc(nc1)C(=O)N2C[C@H]3CN(C[C@@H]3C2)C(=O)c4cnc(OC5CCOCC5)c(c4)C6CC6"                                                                                                                  
Y0K SMILES           CACTVS               3.385 "N[S](=O)(=O)c1ccc(nc1)C(=O)N2C[CH]3CN(C[CH]3C2)C(=O)c4cnc(OC5CCOCC5)c(c4)C6CC6"                                                                                                                     
Y0K SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(ncc1S(=O)(=O)N)C(=O)N2C[C@H]3CN(C[C@@H]3C2)C(=O)c4cc(c(nc4)OC5CCOCC5)C6CC6"                                                                                                                    
Y0K SMILES           "OpenEye OEToolkits" 2.0.7 "c1cc(ncc1S(=O)(=O)N)C(=O)N2CC3CN(CC3C2)C(=O)c4cc(c(nc4)OC5CCOCC5)C6CC6"                                                                                                                             
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
Y0K "SYSTEMATIC NAME" ACDLabs              12.01 "6-[(3aR,6aS)-5-{5-cyclopropyl-6-[(oxan-4-yl)oxy]pyridine-3-carbonyl}hexahydropyrrolo[3,4-c]pyrrole-2(1H)-carbonyl]pyridine-3-sulfonamide"                                
Y0K "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "6-[[(3~{a}~{R},6~{a}~{R})-5-[5-cyclopropyl-6-(oxan-4-yloxy)pyridin-3-yl]carbonyl-1,3,3~{a},4,6,6~{a}-hexahydropyrrolo[3,4-c]pyrrol-2-yl]carbonyl]pyridine-3-sulfonamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
Y0K "Create component" 2023-06-09 RCSB 
Y0K "Initial release"  2024-12-18 RCSB 
# 
