data_XLK
# 
_chem_comp.id                                    XLK 
_chem_comp.name                                  "(5R)-5-[(1R,3aS,3bR,5aR,7R,9aS,9bS,11S,11aR)-7,11-dihydroxy-9a,11a-dimethylhexadecahydro-1H-cyclopenta[a]phenanthren-1-yl]-1-fluorohexan-2-one (non-preferred name)" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C25 H41 F O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-11-29 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        408.590 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     XLK 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8FAO 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
XLK C4  C1  C 0 1 N N N N N N -66.143 -8.115  -20.621 4.164  -0.079 0.378  C4  XLK 1  
XLK C14 C2  C 0 1 N N R N N N -74.448 -7.002  -17.165 -4.696 1.049  -0.561 C14 XLK 2  
XLK C5  C3  C 0 1 N N R N N N -66.876 -7.191  -19.640 2.829  -0.273 -0.343 C5  XLK 3  
XLK C6  C4  C 0 1 N N N N N N -66.697 -5.730  -20.054 2.718  -1.720 -0.830 C6  XLK 4  
XLK C11 C5  C 0 1 N N R N N N -71.644 -7.657  -17.713 -1.785 1.151  -0.237 C11 XLK 5  
XLK C7  C6  C 0 1 N N R N N N -68.347 -7.631  -19.590 1.680  0.030  0.621  C7  XLK 6  
XLK C8  C7  C 0 1 N N N N N N -68.478 -9.148  -19.264 1.753  1.502  1.098  C8  XLK 7  
XLK C9  C8  C 0 1 N N N N N N -69.846 -9.337  -18.586 0.400  2.156  0.709  C9  XLK 8  
XLK C10 C9  C 0 1 N N S N N N -70.506 -7.957  -18.679 -0.549 0.956  0.621  C10 XLK 9  
XLK C12 C10 C 0 1 N N N N N N -72.745 -8.715  -17.770 -2.692 2.240  0.340  C12 XLK 10 
XLK C13 C11 C 0 1 N N N N N N -73.883 -8.373  -16.817 -3.941 2.378  -0.533 C13 XLK 11 
XLK C3  C12 C 0 1 N N N N N N -64.765 -7.601  -21.045 5.312  -0.260 -0.618 C3  XLK 12 
XLK C1  C13 C 0 1 N N N N N N -62.727 -9.045  -20.848 7.921  -0.196 -0.670 C1  XLK 13 
XLK C15 C14 C 0 1 N N N N N N -75.090 -7.040  -18.550 -5.113 0.670  0.862  C15 XLK 14 
XLK C16 C15 C 0 1 N N R N N N -75.726 -5.724  -18.946 -5.869 -0.660 0.836  C16 XLK 15 
XLK C17 C16 C 0 1 N N N N N N -74.733 -4.588  -18.821 -4.963 -1.751 0.262  C17 XLK 16 
XLK C18 C17 C 0 1 N N N N N N -74.080 -4.557  -17.437 -4.547 -1.372 -1.161 C18 XLK 17 
XLK C19 C18 C 0 1 N N S N N N -73.379 -5.878  -17.051 -3.789 -0.043 -1.132 C19 XLK 18 
XLK C2  C19 C 0 1 N N N N N N -63.971 -8.732  -21.600 6.627  -0.069 0.093  C2  XLK 19 
XLK C20 C20 C 0 1 N N N N N N -72.851 -5.696  -15.614 -3.368 0.336  -2.554 C20 XLK 20 
XLK C21 C21 C 0 1 N N S N N N -72.204 -6.246  -18.005 -2.548 -0.183 -0.250 C21 XLK 21 
XLK C22 C22 C 0 1 N N N N N N -71.077 -5.206  -18.027 -1.681 -1.320 -0.779 C22 XLK 22 
XLK C23 C23 C 0 1 N N S N N N -69.898 -5.567  -18.942 -0.364 -1.433 0.007  C23 XLK 23 
XLK C24 C24 C 0 1 N N R N N N -69.337 -6.960  -18.592 0.340  -0.095 -0.097 C24 XLK 24 
XLK C25 C25 C 0 1 N N N N N N -68.709 -6.915  -17.187 0.506  0.288  -1.570 C25 XLK 25 
XLK O1  O1  O 0 1 N N N N N N -64.325 -9.435  -22.520 6.645  0.186  1.273  O1  XLK 26 
XLK O2  O2  O 0 1 N N N N N N -76.157 -5.816  -20.317 -6.257 -1.014 2.165  O2  XLK 27 
XLK O3  O3  O 0 1 N N N N N N -70.314 -5.505  -20.329 -0.640 -1.732 1.377  O3  XLK 28 
XLK H1  H1  H 0 1 N N N N N N -66.764 -8.226  -21.522 4.206  0.924  0.802  H1  XLK 29 
XLK H2  H2  H 0 1 N N N N N N -66.014 -9.097  -20.142 4.256  -0.815 1.176  H2  XLK 30 
XLK H3  H3  H 0 1 N N N N N N -75.241 -6.774  -16.437 -5.584 1.148  -1.185 H3  XLK 31 
XLK H4  H4  H 0 1 N N N N N N -66.438 -7.327  -18.640 2.775  0.403  -1.197 H4  XLK 32 
XLK H5  H5  H 0 1 N N N N N N -67.227 -5.079  -19.343 2.772  -2.395 0.023  H5  XLK 33 
XLK H6  H6  H 0 1 N N N N N N -65.626 -5.478  -20.054 1.766  -1.858 -1.344 H6  XLK 34 
XLK H7  H7  H 0 1 N N N N N N -67.109 -5.582  -21.063 3.536  -1.936 -1.517 H7  XLK 35 
XLK H8  H8  H 0 1 N N N N N N -71.232 -7.650  -16.693 -1.491 1.417  -1.252 H8  XLK 36 
XLK H9  H9  H 0 1 N N N N N N -68.762 -7.485  -20.598 1.715  -0.647 1.474  H9  XLK 37 
XLK H10 H10 H 0 1 N N N N N N -68.428 -9.740  -20.189 1.890  1.539  2.178  H10 XLK 38 
XLK H11 H11 H 0 1 N N N N N N -67.672 -9.461  -18.585 2.575  2.016  0.598  H11 XLK 39 
XLK H12 H12 H 0 1 N N N N N N -70.444 -10.092 -19.118 0.071  2.852  1.481  H12 XLK 40 
XLK H13 H13 H 0 1 N N N N N N -69.722 -9.640  -17.536 0.478  2.661  -0.254 H13 XLK 41 
XLK H14 H14 H 0 1 N N N N N N -70.919 -7.871  -19.695 -0.818 0.610  1.619  H14 XLK 42 
XLK H15 H15 H 0 1 N N N N N N -73.139 -8.769  -18.796 -2.985 1.969  1.354  H15 XLK 43 
XLK H16 H16 H 0 1 N N N N N N -72.321 -9.690  -17.488 -2.154 3.188  0.359  H16 XLK 44 
XLK H17 H17 H 0 1 N N N N N N -74.676 -9.130  -16.908 -3.647 2.650  -1.547 H17 XLK 45 
XLK H18 H18 H 0 1 N N N N N N -73.504 -8.361  -15.784 -4.586 3.155  -0.122 H18 XLK 46 
XLK H19 H19 H 0 1 N N N N N N -64.245 -7.179  -20.172 5.270  -1.264 -1.041 H19 XLK 47 
XLK H20 H20 H 0 1 N N N N N N -64.883 -6.822  -21.813 5.220  0.476  -1.416 H20 XLK 48 
XLK H21 H21 H 0 1 N N N N N N -61.882 -9.111  -21.549 7.995  -1.196 -1.096 H21 XLK 49 
XLK H22 H22 H 0 1 N N N N N N -62.533 -8.249  -20.114 7.944  0.543  -1.471 H22 XLK 50 
XLK H24 H24 H 0 1 N N N N N N -75.866 -7.819  -18.555 -4.225 0.570  1.486  H24 XLK 51 
XLK H25 H25 H 0 1 N N N N N N -74.314 -7.290  -19.289 -5.759 1.447  1.271  H25 XLK 52 
XLK H26 H26 H 0 1 N N N N N N -76.586 -5.526  -18.290 -6.758 -0.560 0.213  H26 XLK 53 
XLK H27 H27 H 0 1 N N N N N N -73.949 -4.714  -19.582 -4.075 -1.852 0.886  H27 XLK 54 
XLK H28 H28 H 0 1 N N N N N N -75.258 -3.636  -18.989 -5.503 -2.698 0.242  H28 XLK 55 
XLK H29 H29 H 0 1 N N N N N N -73.332 -3.750  -17.424 -3.902 -2.149 -1.570 H29 XLK 56 
XLK H30 H30 H 0 1 N N N N N N -74.859 -4.346  -16.690 -5.435 -1.270 -1.785 H30 XLK 57 
XLK H31 H31 H 0 1 N N N N N N -73.686 -5.436  -14.946 -2.828 1.282  -2.533 H31 XLK 58 
XLK H32 H32 H 0 1 N N N N N N -72.386 -6.633  -15.273 -2.721 -0.442 -2.961 H32 XLK 59 
XLK H33 H33 H 0 1 N N N N N N -72.104 -4.889  -15.598 -4.254 0.436  -3.181 H33 XLK 60 
XLK H34 H34 H 0 1 N N N N N N -72.625 -6.279  -19.021 -2.848 -0.428 0.769  H34 XLK 61 
XLK H35 H35 H 0 1 N N N N N N -70.694 -5.092  -17.002 -2.230 -2.258 -0.692 H35 XLK 62 
XLK H36 H36 H 0 1 N N N N N N -71.498 -4.250  -18.370 -1.453 -1.136 -1.829 H36 XLK 63 
XLK H37 H37 H 0 1 N N N N N N -69.100 -4.829  -18.773 0.260  -2.215 -0.425 H37 XLK 64 
XLK H38 H38 H 0 1 N N N N N N -69.411 -6.441  -16.486 1.211  -0.394 -2.045 H38 XLK 65 
XLK H39 H39 H 0 1 N N N N N N -68.491 -7.939  -16.850 -0.459 0.222  -2.073 H39 XLK 66 
XLK H40 H40 H 0 1 N N N N N N -67.776 -6.333  -17.221 0.883  1.308  -1.640 H40 XLK 67 
XLK H41 H41 H 0 1 N N N N N N -76.781 -6.527  -20.406 -6.742 -1.848 2.225  H41 XLK 68 
XLK H42 H42 H 0 1 N N N N N N -70.655 -4.639  -20.519 -1.090 -2.576 1.513  H42 XLK 69 
XLK F1  F1  F 0 1 N Y N N N N -62.915 -10.574 -20.015 8.997  0.023  0.197  F1  XLK 70 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
XLK O1  C2  DOUB N N 1  
XLK C2  C3  SING N N 2  
XLK C2  C1  SING N N 3  
XLK C3  C4  SING N N 4  
XLK C4  C5  SING N N 5  
XLK O3  C23 SING N N 6  
XLK O2  C16 SING N N 7  
XLK C6  C5  SING N N 8  
XLK C5  C7  SING N N 9  
XLK C7  C8  SING N N 10 
XLK C7  C24 SING N N 11 
XLK C8  C9  SING N N 12 
XLK C16 C17 SING N N 13 
XLK C16 C15 SING N N 14 
XLK C23 C24 SING N N 15 
XLK C23 C22 SING N N 16 
XLK C17 C18 SING N N 17 
XLK C10 C24 SING N N 18 
XLK C10 C9  SING N N 19 
XLK C10 C11 SING N N 20 
XLK C24 C25 SING N N 21 
XLK C15 C14 SING N N 22 
XLK C22 C21 SING N N 23 
XLK C21 C11 SING N N 24 
XLK C21 C19 SING N N 25 
XLK C12 C11 SING N N 26 
XLK C12 C13 SING N N 27 
XLK C18 C19 SING N N 28 
XLK C14 C19 SING N N 29 
XLK C14 C13 SING N N 30 
XLK C19 C20 SING N N 31 
XLK C4  H1  SING N N 32 
XLK C4  H2  SING N N 33 
XLK C14 H3  SING N N 34 
XLK C5  H4  SING N N 35 
XLK C6  H5  SING N N 36 
XLK C6  H6  SING N N 37 
XLK C6  H7  SING N N 38 
XLK C11 H8  SING N N 39 
XLK C7  H9  SING N N 40 
XLK C8  H10 SING N N 41 
XLK C8  H11 SING N N 42 
XLK C9  H12 SING N N 43 
XLK C9  H13 SING N N 44 
XLK C10 H14 SING N N 45 
XLK C12 H15 SING N N 46 
XLK C12 H16 SING N N 47 
XLK C13 H17 SING N N 48 
XLK C13 H18 SING N N 49 
XLK C3  H19 SING N N 50 
XLK C3  H20 SING N N 51 
XLK C1  H21 SING N N 52 
XLK C1  H22 SING N N 53 
XLK C15 H24 SING N N 54 
XLK C15 H25 SING N N 55 
XLK C16 H26 SING N N 56 
XLK C17 H27 SING N N 57 
XLK C17 H28 SING N N 58 
XLK C18 H29 SING N N 59 
XLK C18 H30 SING N N 60 
XLK C20 H31 SING N N 61 
XLK C20 H32 SING N N 62 
XLK C20 H33 SING N N 63 
XLK C21 H34 SING N N 64 
XLK C22 H35 SING N N 65 
XLK C22 H36 SING N N 66 
XLK C23 H37 SING N N 67 
XLK C25 H38 SING N N 68 
XLK C25 H39 SING N N 69 
XLK C25 H40 SING N N 70 
XLK O2  H41 SING N N 71 
XLK O3  H42 SING N N 72 
XLK C1  F1  SING N N 73 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
XLK SMILES           ACDLabs              12.01 "FCC(=O)CCC(C)C1CCC2C3CCC4CC(O)CCC4(C)C3CC(O)C21C"                                                                                                                                              
XLK InChI            InChI                1.06  "InChI=1S/C25H41FO3/c1-15(4-6-18(28)14-26)20-8-9-21-19-7-5-16-12-17(27)10-11-24(16,2)22(19)13-23(29)25(20,21)3/h15-17,19-23,27,29H,4-14H2,1-3H3/t15-,16-,17-,19+,20-,21+,22+,23+,24+,25-/m1/s1" 
XLK InChIKey         InChI                1.06  OEUSHDZYFDYIIU-INXSVRIUSA-N                                                                                                                                                                     
XLK SMILES_CANONICAL CACTVS               3.385 "C[C@H](CCC(=O)CF)[C@H]1CC[C@H]2[C@@H]3CC[C@@H]4C[C@H](O)CC[C@]4(C)[C@H]3C[C@H](O)[C@]12C"                                                                                                      
XLK SMILES           CACTVS               3.385 "C[CH](CCC(=O)CF)[CH]1CC[CH]2[CH]3CC[CH]4C[CH](O)CC[C]4(C)[CH]3C[CH](O)[C]12C"                                                                                                                  
XLK SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H](CCC(=O)CF)[C@H]1CC[C@@H]2[C@@]1([C@H](C[C@H]3[C@H]2CC[C@H]4[C@@]3(CC[C@H](C4)O)C)O)C"                                                                                                   
XLK SMILES           "OpenEye OEToolkits" 2.0.7 "CC(CCC(=O)CF)C1CCC2C1(C(CC3C2CCC4C3(CCC(C4)O)C)O)C"                                                                                                                                            
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
XLK "SYSTEMATIC NAME" ACDLabs              12.01 "(5R)-5-[(1R,3aS,3bR,5aR,7R,9aS,9bS,11S,11aR)-7,11-dihydroxy-9a,11a-dimethylhexadecahydro-1H-cyclopenta[a]phenanthren-1-yl]-1-fluorohexan-2-one (non-preferred name)"                                                      
XLK "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(5~{R})-5-[(3~{R},5~{R},8~{R},9~{S},10~{S},12~{S},13~{R},14~{S},17~{R})-10,13-dimethyl-3,12-bis(oxidanyl)-2,3,4,5,6,7,8,9,11,12,14,15,16,17-tetradecahydro-1~{H}-cyclopenta[a]phenanthren-17-yl]-1-fluoranyl-hexan-2-one" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
XLK "Create component" 2022-11-29 RCSB 
XLK "Initial release"  2023-12-13 RCSB 
XLK "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            XLK 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C1 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
