data_XKK
# 
_chem_comp.id                                    XKK 
_chem_comp.name                                  
;5'-O-[N-(3-Indolepropionic acid)sulfamoyl] 2-aminoethenoadenosine
;
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C23 H24 N8 O7 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "[(2~{R},3~{S},4~{R},5~{R})-5-(5-azanylimidazo[2,1-f]purin-3-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl ~{N}-[3-(1~{H}-indol-3-yl)propanoyl]sulfamate" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-06-07 
_chem_comp.pdbx_modified_date                    2023-06-09 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        556.551 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     XKK 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8PAF 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
XKK C2    C1  C 0 1 Y N N 9.800  5.602  -1.027 5.834  0.520  -0.434 C2    XKK 1  
XKK C4    C2  C 0 1 Y N N 7.956  5.636  0.301  3.556  0.102  -0.292 C4    XKK 2  
XKK C5    C3  C 0 1 Y N N 7.065  5.321  -0.732 3.267  1.469  -0.347 C5    XKK 3  
XKK C6    C4  C 0 1 Y N N 7.606  5.124  -2.023 4.389  2.402  -0.454 C6    XKK 4  
XKK N3    N1  N 0 1 Y N N 9.281  5.796  0.192  4.828  -0.313 -0.338 N3    XKK 5  
XKK O2    O1  O 0 1 N N N 5.389  4.792  9.407  -3.442 -4.623 0.773  O2    XKK 6  
XKK "O5'" O2  O 0 1 N N N 6.298  4.912  7.085  -1.809 -3.639 -0.613 "O5'" XKK 7  
XKK "C5'" C5  C 0 1 N N N 6.062  4.774  5.636  -0.971 -3.678 0.544  "C5'" XKK 8  
XKK "C4'" C6  C 0 1 N N R 7.104  5.582  4.935  0.495  -3.606 0.115  "C4'" XKK 9  
XKK "O4'" O3  O 0 1 N N N 7.248  5.048  3.615  0.773  -2.320 -0.464 "O4'" XKK 10 
XKK "C3'" C7  C 0 1 N N S 6.825  7.090  4.825  1.410  -3.766 1.344  "C3'" XKK 11 
XKK "O3'" O4  O 0 1 N N N 7.849  7.803  5.518  2.254  -4.910 1.195  "O3'" XKK 12 
XKK "C2'" C8  C 0 1 N N R 6.736  7.321  3.317  2.254  -2.468 1.361  "C2'" XKK 13 
XKK "O2'" O5  O 0 1 N N N 7.224  8.592  2.912  3.615  -2.749 1.695  "O2'" XKK 14 
XKK N9    N2  N 0 1 Y N N 7.175  5.758  1.442  2.345  -0.536 -0.195 N9    XKK 15 
XKK C8    C9  C 0 1 Y N N 5.872  5.506  1.035  1.376  0.424  -0.193 C8    XKK 16 
XKK N7    N3  N 0 1 Y N N 5.777  5.263  -0.259 1.924  1.602  -0.283 N7    XKK 17 
XKK N6    N4  N 0 1 Y N N 7.060  4.817  -3.197 4.485  3.713  -0.526 N6    XKK 18 
XKK N1    N5  N 0 1 Y N N 8.988  5.289  -2.127 5.658  1.875  -0.495 N1    XKK 19 
XKK C9    C10 C 0 1 Y N N 8.120  4.802  -4.094 5.776  4.057  -0.613 C9    XKK 20 
XKK C10   C11 C 0 1 Y N N 9.302  5.068  -3.473 6.523  2.935  -0.595 C10   XKK 21 
XKK N2    N6  N 0 1 N N N 11.105 5.710  -1.198 7.113  0.015  -0.470 N2    XKK 22 
XKK S1    S1  S 0 1 N N N 5.063  4.618  8.052  -3.297 -3.705 -0.302 S1    XKK 23 
XKK O3    O6  O 0 1 N N N 4.259  3.540  7.564  -3.961 -3.858 -1.549 O3    XKK 24 
XKK N4    N7  N 0 1 N N N 4.083  5.803  7.340  -3.742 -2.222 0.285  N4    XKK 25 
XKK C7    C12 C 0 1 N N N 3.876  7.062  7.684  -3.678 -1.135 -0.509 C7    XKK 26 
XKK C11   C13 C 0 1 N N N 4.306  7.431  9.075  -4.082 0.214  0.025  C11   XKK 27 
XKK C12   C14 C 0 1 N N N 4.339  8.945  9.172  -3.917 1.268  -1.071 C12   XKK 28 
XKK C13   C15 C 0 1 Y N N 3.022  9.662  9.227  -4.321 2.618  -0.536 C13   XKK 29 
XKK C14   C16 C 0 1 Y N N 2.330  10.021 10.446 -3.474 3.547  0.214  C14   XKK 30 
XKK C15   C17 C 0 1 Y N N 1.197  10.781 10.076 -4.279 4.665  0.497  C15   XKK 31 
XKK N16   N8  N 0 1 Y N N 1.219  10.905 8.707  -5.520 4.420  -0.047 N16   XKK 32 
XKK C17   C18 C 0 1 Y N N 2.322  10.249 8.209  -5.525 3.198  -0.662 C17   XKK 33 
XKK O24   O7  O 0 1 N N N 3.395  7.872  6.924  -3.295 -1.244 -1.655 O24   XKK 34 
XKK C25   C19 C 0 1 Y N N 2.558  9.767  11.803 -2.148 3.515  0.650  C25   XKK 35 
XKK C26   C20 C 0 1 Y N N 1.673  10.264 12.730 -1.638 4.573  1.349  C26   XKK 36 
XKK C27   C21 C 0 1 Y N N 0.554  11.000 12.342 -2.428 5.679  1.631  C27   XKK 37 
XKK C28   C22 C 0 1 Y N N 0.293  11.270 11.019 -3.739 5.731  1.211  C28   XKK 38 
XKK C16   C23 C 0 1 N N R 7.560  6.140  2.776  2.132  -1.982 -0.110 C16   XKK 39 
XKK H1    H1  H 0 1 N N N 5.060  5.150  5.381  -1.203 -2.831 1.189  H1    XKK 40 
XKK H2    H2  H 0 1 N N N 6.144  3.718  5.341  -1.145 -4.607 1.087  H2    XKK 41 
XKK H3    H3  H 0 1 N N N 8.054  5.458  5.476  0.708  -4.392 -0.610 H3    XKK 42 
XKK H4    H4  H 0 1 N N N 5.844  7.301  5.275  0.815  -3.848 2.254  H4    XKK 43 
XKK H5    H5  H 0 1 N N N 7.815  7.588  6.443  2.851  -5.058 1.941  H5    XKK 44 
XKK H6    H6  H 0 1 N N N 5.690  7.195  3.000  1.829  -1.737 2.049  H6    XKK 45 
XKK H7    H7  H 0 1 N N N 6.674  9.274  3.278  3.732  -3.139 2.572  H7    XKK 46 
XKK H8    H8  H 0 1 N N N 5.026  5.508  1.706  0.315  0.235  -0.127 H8    XKK 47 
XKK H9    H9  H 0 1 N N N 8.019  4.604  -5.151 6.156  5.066  -0.685 H9    XKK 48 
XKK H10   H10 H 0 1 N N N 10.282 5.102  -3.926 7.601  2.881  -0.649 H10   XKK 49 
XKK H11   H11 H 0 1 N N N 11.538 5.937  -0.326 7.258  -0.943 -0.424 H11   XKK 50 
XKK H12   H12 H 0 1 N N N 11.470 4.842  -1.535 7.871  0.617  -0.541 H12   XKK 51 
XKK H13   H13 H 0 1 N N N 3.581  5.501  6.530  -4.048 -2.135 1.202  H13   XKK 52 
XKK H14   H14 H 0 1 N N N 3.591  7.026  9.806  -5.124 0.182  0.344  H14   XKK 53 
XKK H15   H15 H 0 1 N N N 5.307  7.023  9.276  -3.451 0.472  0.875  H15   XKK 54 
XKK H16   H16 H 0 1 N N N 4.895  9.205  10.085 -2.875 1.301  -1.390 H16   XKK 55 
XKK H17   H17 H 0 1 N N N 4.883  9.320  8.292  -4.549 1.010  -1.921 H17   XKK 56 
XKK H18   H18 H 0 1 N N N 0.541  11.395 8.159  -6.277 5.025  -0.003 H18   XKK 57 
XKK H19   H19 H 0 1 N N N 2.595  10.204 7.165  -6.374 2.763  -1.169 H19   XKK 58 
XKK H20   H20 H 0 1 N N N 3.415  9.190  12.117 -1.527 2.658  0.434  H20   XKK 59 
XKK H21   H21 H 0 1 N N N 1.848  10.081 13.780 -0.612 4.547  1.686  H21   XKK 60 
XKK H22   H22 H 0 1 N N N -0.124 11.367 13.099 -2.011 6.506  2.185  H22   XKK 61 
XKK H23   H23 H 0 1 N N N -0.577 11.838 10.722 -4.346 6.596  1.435  H23   XKK 62 
XKK H24   H24 H 0 1 N N N 8.631  6.387  2.821  2.839  -2.512 -0.749 H24   XKK 63 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
XKK C9    C10   DOUB Y N 1  
XKK C9    N6    SING Y N 2  
XKK C10   N1    SING Y N 3  
XKK N6    C6    DOUB Y N 4  
XKK N1    C6    SING Y N 5  
XKK N1    C2    SING Y N 6  
XKK C6    C5    SING Y N 7  
XKK N2    C2    SING N N 8  
XKK C2    N3    DOUB Y N 9  
XKK C5    N7    SING Y N 10 
XKK C5    C4    DOUB Y N 11 
XKK N7    C8    DOUB Y N 12 
XKK N3    C4    SING Y N 13 
XKK C4    N9    SING Y N 14 
XKK C8    N9    SING Y N 15 
XKK N9    C16   SING N N 16 
XKK C16   "C2'" SING N N 17 
XKK C16   "O4'" SING N N 18 
XKK "O2'" "C2'" SING N N 19 
XKK "C2'" "C3'" SING N N 20 
XKK "O4'" "C4'" SING N N 21 
XKK "C3'" "C4'" SING N N 22 
XKK "C3'" "O3'" SING N N 23 
XKK "C4'" "C5'" SING N N 24 
XKK "C5'" "O5'" SING N N 25 
XKK O24   C7    DOUB N N 26 
XKK "O5'" S1    SING N N 27 
XKK N4    C7    SING N N 28 
XKK N4    S1    SING N N 29 
XKK O3    S1    DOUB N N 30 
XKK C7    C11   SING N N 31 
XKK S1    O2    DOUB N N 32 
XKK C17   N16   SING Y N 33 
XKK C17   C13   DOUB Y N 34 
XKK N16   C15   SING Y N 35 
XKK C11   C12   SING N N 36 
XKK C12   C13   SING N N 37 
XKK C13   C14   SING Y N 38 
XKK C15   C14   DOUB Y N 39 
XKK C15   C28   SING Y N 40 
XKK C14   C25   SING Y N 41 
XKK C28   C27   DOUB Y N 42 
XKK C25   C26   DOUB Y N 43 
XKK C27   C26   SING Y N 44 
XKK "C5'" H1    SING N N 45 
XKK "C5'" H2    SING N N 46 
XKK "C4'" H3    SING N N 47 
XKK "C3'" H4    SING N N 48 
XKK "O3'" H5    SING N N 49 
XKK "C2'" H6    SING N N 50 
XKK "O2'" H7    SING N N 51 
XKK C8    H8    SING N N 52 
XKK C9    H9    SING N N 53 
XKK C10   H10   SING N N 54 
XKK N2    H11   SING N N 55 
XKK N2    H12   SING N N 56 
XKK N4    H13   SING N N 57 
XKK C11   H14   SING N N 58 
XKK C11   H15   SING N N 59 
XKK C12   H16   SING N N 60 
XKK C12   H17   SING N N 61 
XKK N16   H18   SING N N 62 
XKK C17   H19   SING N N 63 
XKK C25   H20   SING N N 64 
XKK C26   H21   SING N N 65 
XKK C27   H22   SING N N 66 
XKK C28   H23   SING N N 67 
XKK C16   H24   SING N N 68 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
XKK InChI            InChI                1.06  "InChI=1S/C23H24N8O7S/c24-23-28-21-17(20-25-7-8-30(20)23)27-11-31(21)22-19(34)18(33)15(38-22)10-37-39(35,36)29-16(32)6-5-12-9-26-14-4-2-1-3-13(12)14/h1-4,7-9,11,15,18-19,22,26,33-34H,5-6,10H2,(H2,24,28)(H,29,32)/t15-,18-,19-,22-/m1/s1" 
XKK InChIKey         InChI                1.06  UXQPTDCOLAEKOF-CIVUBGFFSA-N                                                                                                                                                                                                                 
XKK SMILES_CANONICAL CACTVS               3.385 "Nc1nc2n(cnc2c3nccn13)[C@@H]4O[C@H](CO[S](=O)(=O)NC(=O)CCc5c[nH]c6ccccc56)[C@@H](O)[C@H]4O"                                                                                                                                                 
XKK SMILES           CACTVS               3.385 "Nc1nc2n(cnc2c3nccn13)[CH]4O[CH](CO[S](=O)(=O)NC(=O)CCc5c[nH]c6ccccc56)[CH](O)[CH]4O"                                                                                                                                                       
XKK SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)c(c[nH]2)CCC(=O)NS(=O)(=O)OC[C@@H]3[C@H]([C@H]([C@@H](O3)n4cnc5c4nc(n6c5ncc6)N)O)O"                                                                                                                                             
XKK SMILES           "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)c(c[nH]2)CCC(=O)NS(=O)(=O)OCC3C(C(C(O3)n4cnc5c4nc(n6c5ncc6)N)O)O"                                                                                                                                                               
# 
_pdbx_chem_comp_identifier.comp_id           XKK 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "[(2~{R},3~{S},4~{R},5~{R})-5-(5-azanylimidazo[2,1-f]purin-3-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl ~{N}-[3-(1~{H}-indol-3-yl)propanoyl]sulfamate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
XKK "Create component" 2023-06-07 PDBE 
XKK "Initial release"  2023-06-14 RCSB 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      XKK 
_pdbx_chem_comp_synonyms.name         "[(2~{R},3~{S},4~{R},5~{R})-5-(5-azanylimidazo[2,1-f]purin-3-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl ~{N}-[3-(1~{H}-indol-3-yl)propanoyl]sulfamate" 
_pdbx_chem_comp_synonyms.provenance   AUTHOR 
_pdbx_chem_comp_synonyms.type         ? 
# 
