data_XJK
# 
_chem_comp.id                                    XJK 
_chem_comp.name                                  "5-(4-chlorophenyl)-2-(5,6-dimethoxy-2,3-dihydro-1H-benzimidazol-1-yl)-N-methyl-1,3-thiazole-4-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C20 H19 Cl N4 O3 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-06-07 
_chem_comp.pdbx_modified_date                    2024-12-13 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        430.908 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     XJK 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7G4K 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
XJK C10  C1  C  0 1 Y N N N N N -15.507 8.375  48.265 -4.087 -1.744 -0.061 C10  XJK 1  
XJK C11  C2  C  0 1 Y N N N N N -13.056 8.855  48.202 -3.221 0.500  0.024  C11  XJK 2  
XJK C13  C3  C  0 1 Y N N N N N -15.746 9.469  49.079 -5.382 -1.239 -0.042 C13  XJK 3  
XJK C15  C4  C  0 1 Y N N N N N -14.671 10.228 49.450 -5.595 0.128  0.010  C15  XJK 4  
XJK C16  C5  C  0 1 Y N N N N N -11.682 3.855  43.938 3.390  -0.479 -0.013 C16  XJK 5  
XJK C19  C6  C  0 1 Y N N N N N -10.747 4.356  43.000 4.125  -1.145 0.971  C19  XJK 6  
XJK C20  C7  C  0 1 Y N N N N N -12.347 2.664  43.670 4.057  0.255  -0.997 C20  XJK 7  
XJK C21  C8  C  0 1 Y N N N N N -11.045 2.489  41.572 6.157  -0.345 -0.013 C21  XJK 8  
XJK C24  C9  C  0 1 Y N N N N N -10.408 3.698  41.838 5.502  -1.075 0.965  C24  XJK 9  
XJK C25  C10 C  0 1 Y N N N N N -12.008 1.985  42.485 5.435  0.318  -0.991 C25  XJK 10 
XJK C27  C11 C  0 1 N N N N N N -8.081  5.744  47.998 1.084  4.307  0.053  C27  XJK 11 
XJK C28  C12 C  0 1 N N N N N N -11.024 10.731 49.195 -3.562 3.180  0.129  C28  XJK 12 
XJK C1   C13 C  0 1 Y N N N N N -13.285 6.184  46.505 -0.524 -1.079 -0.038 C1   XJK 13 
XJK N2   N1  N  0 1 N N N N N N -14.293 6.892  47.079 -1.804 -1.603 -0.057 N2   XJK 14 
XJK C3   C14 C  0 1 Y N N N N N -11.284 5.376  46.038 1.052  0.515  0.023  C3   XJK 15 
XJK N4   N2  N  0 1 Y N N N N N -12.002 6.182  46.899 -0.239 0.183  0.010  N4   XJK 16 
XJK S5   S1  S  0 1 Y N N N N N -13.656 5.147  45.164 0.956  -2.031 -0.067 S5   XJK 17 
XJK C6   C15 C  0 1 Y N N N N N -12.006 4.700  45.062 1.916  -0.554 -0.016 C6   XJK 18 
XJK C7   C16 C  0 1 Y N N N N N -14.160 8.068  47.844 -3.003 -0.872 -0.029 C7   XJK 19 
XJK C8   C17 C  0 1 N N N N N N -15.682 6.570  47.044 -2.161 -3.026 -0.108 C8   XJK 20 
XJK N9   N3  N  0 1 N N N N N N -16.410 7.446  47.778 -3.628 -3.070 -0.106 N9   XJK 21 
XJK C12  C18 C  0 1 N N N N N N -9.833  5.250  46.362 1.514  1.908  0.076  C12  XJK 22 
XJK C14  C19 C  0 1 Y N N N N N -13.335 9.958  49.018 -4.512 1.000  0.043  C14  XJK 23 
XJK O17  O1  O  0 1 N N N N N N -9.110  4.567  45.641 2.701  2.152  0.188  O17  XJK 24 
XJK N18  N4  N  0 1 N N N N N N -9.422  5.897  47.497 0.623  2.917  0.000  N18  XJK 25 
XJK O22  O2  O  0 1 N N N N N N -12.418 10.869 49.514 -4.721 2.344  0.095  O22  XJK 26 
XJK O23  O3  O  0 1 N N N N N N -14.819 11.321 50.247 -6.864 0.619  0.028  O23  XJK 27 
XJK CL26 CL1 CL 0 0 N N N N N N -10.697 1.617  40.114 7.891  -0.261 -0.013 CL26 XJK 28 
XJK C29  C20 C  0 1 N N N N N N -16.004 11.299 51.045 -7.929 -0.334 -0.008 C29  XJK 29 
XJK H31  H1  H  0 1 N N N N N N -12.055 8.625  47.870 -2.381 1.178  0.050  H31  XJK 30 
XJK H32  H2  H  0 1 N N N N N N -16.745 9.714  49.409 -6.224 -1.915 -0.067 H32  XJK 31 
XJK H34  H3  H  0 1 N N N N N N -10.274 5.305  43.207 3.615  -1.714 1.735  H34  XJK 32 
XJK H35  H4  H  0 1 N N N N N N -13.095 2.275  44.345 3.495  0.773  -1.760 H35  XJK 33 
XJK H36  H5  H  0 1 N N N N N N -9.675  4.105  41.158 6.071  -1.590 1.725  H36  XJK 34 
XJK H37  H6  H  0 1 N N N N N N -12.497 1.048  42.263 5.951  0.885  -1.752 H37  XJK 35 
XJK H40  H7  H  0 1 N N N N N N -7.960  6.344  48.912 1.766  4.495  -0.777 H40  XJK 36 
XJK H38  H8  H  0 1 N N N N N N -7.894  4.685  48.228 0.227  4.976  -0.022 H38  XJK 37 
XJK H39  H9  H  0 1 N N N N N N -7.364  6.086  47.237 1.601  4.483  0.996  H39  XJK 38 
XJK H43  H10 H  0 1 N N N N N N -10.455 11.541 49.675 -2.966 3.010  -0.768 H43  XJK 39 
XJK H41  H11 H  0 1 N N N N N N -10.659 9.760  49.561 -3.869 4.225  0.169  H41  XJK 40 
XJK H42  H12 H  0 1 N N N N N N -10.890 10.786 48.105 -2.967 2.941  1.010  H42  XJK 41 
XJK H1   H13 H  0 1 N N N N N N -16.030 6.600  46.001 -1.770 -3.479 -1.019 H1   XJK 42 
XJK H30  H14 H  0 1 N N N N N N -15.825 5.557  47.449 -1.771 -3.544 0.768  H30  XJK 43 
XJK H2   H15 H  0 1 N N N N N N -17.096 7.895  47.205 -4.179 -3.868 -0.134 H2   XJK 44 
XJK H33  H16 H  0 1 N N N N N N -10.065 6.486  47.986 -0.323 2.723  -0.089 H33  XJK 45 
XJK H46  H17 H  0 1 N N N N N N -16.051 12.211 51.658 -8.885 0.189  0.012  H46  XJK 46 
XJK H45  H18 H  0 1 N N N N N N -16.886 11.252 50.390 -7.856 -0.925 -0.921 H45  XJK 47 
XJK H44  H19 H  0 1 N N N N N N -15.987 10.417 51.702 -7.857 -0.992 0.858  H44  XJK 48 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
XJK C1  N2   SING N N 1  
XJK C1  N4   DOUB Y N 2  
XJK C3  N4   SING Y N 3  
XJK C1  S5   SING Y N 4  
XJK C3  C6   DOUB Y N 5  
XJK S5  C6   SING Y N 6  
XJK N2  C7   SING N N 7  
XJK N2  C8   SING N N 8  
XJK C8  N9   SING N N 9  
XJK C7  C10  DOUB Y N 10 
XJK N9  C10  SING N N 11 
XJK C7  C11  SING Y N 12 
XJK C3  C12  SING N N 13 
XJK C10 C13  SING Y N 14 
XJK C11 C14  DOUB Y N 15 
XJK C13 C15  DOUB Y N 16 
XJK C14 C15  SING Y N 17 
XJK C6  C16  SING N N 18 
XJK C12 O17  DOUB N N 19 
XJK C12 N18  SING N N 20 
XJK C16 C19  DOUB Y N 21 
XJK C16 C20  SING Y N 22 
XJK C14 O22  SING N N 23 
XJK C15 O23  SING N N 24 
XJK C19 C24  SING Y N 25 
XJK C21 C24  DOUB Y N 26 
XJK C20 C25  DOUB Y N 27 
XJK C21 C25  SING Y N 28 
XJK C21 CL26 SING N N 29 
XJK N18 C27  SING N N 30 
XJK O22 C28  SING N N 31 
XJK O23 C29  SING N N 32 
XJK C11 H31  SING N N 33 
XJK C13 H32  SING N N 34 
XJK C19 H34  SING N N 35 
XJK C20 H35  SING N N 36 
XJK C24 H36  SING N N 37 
XJK C25 H37  SING N N 38 
XJK C27 H40  SING N N 39 
XJK C27 H38  SING N N 40 
XJK C27 H39  SING N N 41 
XJK C28 H43  SING N N 42 
XJK C28 H41  SING N N 43 
XJK C28 H42  SING N N 44 
XJK C8  H1   SING N N 45 
XJK C8  H30  SING N N 46 
XJK N9  H2   SING N N 47 
XJK N18 H33  SING N N 48 
XJK C29 H46  SING N N 49 
XJK C29 H45  SING N N 50 
XJK C29 H44  SING N N 51 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
XJK SMILES           ACDLabs              12.01 "Clc1ccc(cc1)c1sc(nc1C(=O)NC)N1CNc2cc(OC)c(OC)cc21"                                                                                               
XJK InChI            InChI                1.06  "InChI=1S/C20H19ClN4O3S/c1-22-19(26)17-18(11-4-6-12(21)7-5-11)29-20(24-17)25-10-23-13-8-15(27-2)16(28-3)9-14(13)25/h4-9,23H,10H2,1-3H3,(H,22,26)" 
XJK InChIKey         InChI                1.06  XPOHWHIIYSFTPO-UHFFFAOYSA-N                                                                                                                       
XJK SMILES_CANONICAL CACTVS               3.385 "CNC(=O)c1nc(sc1c2ccc(Cl)cc2)N3CNc4cc(OC)c(OC)cc34"                                                                                               
XJK SMILES           CACTVS               3.385 "CNC(=O)c1nc(sc1c2ccc(Cl)cc2)N3CNc4cc(OC)c(OC)cc34"                                                                                               
XJK SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CNC(=O)c1c(sc(n1)N2CNc3c2cc(c(c3)OC)OC)c4ccc(cc4)Cl"                                                                                             
XJK SMILES           "OpenEye OEToolkits" 2.0.7 "CNC(=O)c1c(sc(n1)N2CNc3c2cc(c(c3)OC)OC)c4ccc(cc4)Cl"                                                                                             
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
XJK "SYSTEMATIC NAME" ACDLabs              12.01 "5-(4-chlorophenyl)-2-(5,6-dimethoxy-2,3-dihydro-1H-benzimidazol-1-yl)-N-methyl-1,3-thiazole-4-carboxamide" 
XJK "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "5-(4-chlorophenyl)-2-(5,6-dimethoxy-2,3-dihydrobenzimidazol-1-yl)-~{N}-methyl-1,3-thiazole-4-carboxamide"  
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
XJK "Create component" 2023-06-07 RCSB 
XJK "Initial release"  2024-12-18 RCSB 
# 
