data_XEK
# 
_chem_comp.id                                    XEK 
_chem_comp.name                                  "(5P)-5-[(1P,3M,3'P)-3-{3-chloro-5-[(2-chlorophenyl)methoxy]-4-fluorophenyl}-2-oxo-2H-[1,3'-bipyridin]-5-yl]-1-methylpyrimidine-2,4(1H,3H)-dione" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C28 H19 Cl2 F N4 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-10-31 
_chem_comp.pdbx_modified_date                    2024-05-10 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        565.379 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     XEK 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8UR9 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
XEK C1  C1  C  0 1 N N N N N N -20.318 -4.717  -27.439 0.920  0.998  1.242  C1  XEK 1  
XEK C2  C2  C  0 1 N N N N N N -21.621 -4.449  -27.816 0.824  -0.321 0.738  C2  XEK 2  
XEK C3  C3  C  0 1 Y N N N N N -21.956 -4.288  -29.289 -0.391 -1.132 0.985  C3  XEK 3  
XEK C4  C4  C  0 1 Y N N N N N -22.494 -3.095  -29.699 -0.315 -2.286 1.763  C4  XEK 4  
XEK C5  C5  C  0 1 Y N N N N N -22.789 -2.924  -31.032 -1.450 -3.040 1.992  C5  XEK 5  
XEK C6  C6  C  0 1 Y N N N N N -22.564 -3.938  -31.958 -2.664 -2.652 1.450  C6  XEK 6  
XEK C7  C7  C  0 1 Y N N N N N -22.020 -5.155  -31.552 -2.746 -1.502 0.673  C7  XEK 7  
XEK C8  C8  C  0 1 N N N N N N -20.411 -6.566  -32.675 -3.951 0.067  -0.647 C8  XEK 8  
XEK C9  C9  C  0 1 Y N N N N N -20.211 -7.369  -33.980 -5.349 0.324  -1.148 C9  XEK 9  
XEK C10 C10 C  0 1 Y N N N N N -20.674 -8.683  -34.073 -6.372 -0.544 -0.818 C10 XEK 10 
XEK C11 C11 C  0 1 Y N N N N N -20.505 -9.413  -35.250 -7.654 -0.308 -1.278 C11 XEK 11 
XEK C12 C12 C  0 1 Y N N N N N -19.868 -8.844  -36.348 -7.914 0.796  -2.068 C12 XEK 12 
XEK C13 C13 C  0 1 Y N N N N N -19.396 -7.540  -36.272 -6.891 1.666  -2.398 C13 XEK 13 
XEK C14 C14 C  0 1 Y N N N N N -19.566 -6.810  -35.092 -5.609 1.433  -1.933 C14 XEK 14 
XEK C15 C15 C  0 1 Y N N N N N -21.722 -5.318  -30.202 -1.615 -0.739 0.444  C15 XEK 15 
XEK C17 C16 C  0 1 N N N N N N -22.283 -4.453  -25.514 3.021  -0.048 -0.206 C17 XEK 16 
XEK C21 C17 C  0 1 N N N N N N -26.986 -4.991  -24.292 7.766  -1.303 -0.547 C21 XEK 17 
XEK C22 C18 C  0 1 N N N N N N -25.375 -4.323  -22.605 6.266  -1.573 -2.432 C22 XEK 18 
XEK C24 C19 C  0 1 Y N N N N N -18.661 -5.128  -25.770 2.103  3.035  1.523  C24 XEK 19 
XEK C25 C20 C  0 1 Y N N N N N -18.219 -6.381  -25.383 2.631  3.270  2.790  C25 XEK 20 
XEK C27 C21 C  0 1 Y N N N N N -16.016 -5.421  -25.111 2.230  5.597  2.434  C27 XEK 21 
XEK C16 C22 C  0 1 N N N N N N -22.608 -4.322  -26.852 1.879  -0.845 0.012  C16 XEK 22 
XEK C18 C23 C  0 1 N N N N N N -23.364 -4.362  -24.429 4.167  -0.583 -0.981 C18 XEK 23 
XEK C19 C24 C  0 1 N N N N N N -23.117 -4.029  -23.092 3.997  -1.015 -2.375 C19 XEK 24 
XEK C20 C25 C  0 1 N N N N N N -24.664 -4.682  -24.794 5.403  -0.691 -0.417 C20 XEK 25 
XEK C23 C26 C  0 1 N N N N N N -20.974 -4.754  -25.189 3.068  1.229  0.304  C23 XEK 26 
XEK C26 C27 C  0 1 Y N N N N N -16.878 -6.520  -25.049 2.691  4.577  3.245  C26 XEK 27 
XEK C28 C28 C  0 1 Y N N N N N -17.765 -4.053  -25.807 1.660  4.113  0.767  C28 XEK 28 
XEK F1  F1  F  0 1 N N N N N N -22.895 -3.718  -33.260 -3.771 -3.393 1.676  F1  XEK 29 
XEK N1  N1  N  0 1 N N N N N N -24.129 -4.013  -22.213 5.069  -1.495 -3.040 N1  XEK 30 
XEK N2  N2  N  0 1 N N N N N N -25.633 -4.651  -23.883 6.439  -1.188 -1.157 N2  XEK 31 
XEK N3  N3  N  0 1 N N N N N N -20.036 -4.866  -26.140 2.025  1.732  1.016  N3  XEK 32 
XEK N4  N4  N  0 1 Y N N N N N -16.472 -4.213  -25.484 1.736  5.341  1.238  N4  XEK 33 
XEK O1  O1  O  0 1 N N N N N N -19.309 -4.850  -28.412 -0.005 1.474  1.880  O1  XEK 34 
XEK O2  O2  O  0 1 N N N N N N -21.775 -6.207  -32.469 -3.940 -1.125 0.141  O2  XEK 35 
XEK O3  O3  O  0 1 N N N N N N -21.837 -3.690  -22.650 2.912  -0.938 -2.921 O3  XEK 36 
XEK O4  O4  O  0 1 N N N N N N -26.431 -4.306  -21.673 7.217  -2.009 -3.052 O4  XEK 37 
XEK CL1 CL1 CL 0 0 N N N N N N -23.470 -1.361  -31.533 -1.355 -4.477 2.962  CL1 XEK 38 
XEK CL2 CL2 CL 0 0 N N N N N N -18.950 -5.140  -35.041 -4.326 2.529  -2.342 CL2 XEK 39 
XEK H1  H1  H  0 1 N N N N N N -22.683 -2.304  -28.988 0.630  -2.590 2.187  H1  XEK 40 
XEK H2  H2  H  0 1 N N N N N N -19.807 -5.648  -32.727 -3.277 -0.052 -1.495 H2  XEK 41 
XEK H3  H3  H  0 1 N N N N N N -20.074 -7.179  -31.826 -3.623 0.909  -0.037 H3  XEK 42 
XEK H4  H4  H  0 1 N N N N N N -21.167 -9.138  -33.227 -6.170 -1.408 -0.202 H4  XEK 43 
XEK H5  H5  H  0 1 N N N N N N -20.871 -10.427 -35.309 -8.454 -0.987 -1.020 H5  XEK 44 
XEK H6  H6  H  0 1 N N N N N N -19.741 -9.414  -37.256 -8.915 0.980  -2.427 H6  XEK 45 
XEK H7  H7  H  0 1 N N N N N N -18.900 -7.092  -37.120 -7.093 2.528  -3.016 H7  XEK 46 
XEK H8  H8  H  0 1 N N N N N N -21.305 -6.252  -29.857 -1.679 0.157  -0.155 H8  XEK 47 
XEK H13 H9  H  0 1 N N N N N N -27.661 -4.917  -23.427 7.867  -2.282 -0.078 H13 XEK 48 
XEK H14 H10 H  0 1 N N N N N N -27.318 -4.295  -25.076 8.531  -1.188 -1.315 H14 XEK 49 
XEK H12 H11 H  0 1 N N N N N N -27.003 -6.019  -24.683 7.888  -0.525 0.207  H12 XEK 50 
XEK H16 H12 H  0 1 N N N N N N -18.894 -7.223  -25.342 2.983  2.454  3.402  H16 XEK 51 
XEK H18 H13 H  0 1 N N N N N N -14.974 -5.544  -24.857 2.275  6.617  2.784  H18 XEK 52 
XEK H9  H14 H  0 1 N N N N N N -23.628 -4.121  -27.144 1.829  -1.849 -0.383 H9  XEK 53 
XEK H11 H15 H  0 1 N N N N N N -24.888 -4.955  -25.814 5.563  -0.382 0.605  H11 XEK 54 
XEK H15 H16 H  0 1 N N N N N N -20.703 -4.901  -24.154 3.944  1.838  0.137  H15 XEK 55 
XEK H17 H17 H  0 1 N N N N N N -16.499 -7.483  -24.740 3.094  4.797  4.223  H17 XEK 56 
XEK H19 H18 H  0 1 N N N N N N -18.121 -3.077  -26.101 1.249  3.942  -0.218 H19 XEK 57 
XEK H10 H19 H  0 1 N N N N N N -23.955 -3.769  -21.259 4.976  -1.785 -3.961 H10 XEK 58 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
XEK O1  C1  DOUB N N 1  
XEK C1  C2  SING N N 2  
XEK C1  N3  SING N N 3  
XEK C2  C3  SING N N 4  
XEK C2  C16 DOUB N N 5  
XEK C3  C4  DOUB Y N 6  
XEK C3  C15 SING Y N 7  
XEK C4  C5  SING Y N 8  
XEK C5  CL1 SING N N 9  
XEK C5  C6  DOUB Y N 10 
XEK C6  F1  SING N N 11 
XEK C6  C7  SING Y N 12 
XEK C7  O2  SING N N 13 
XEK C7  C15 DOUB Y N 14 
XEK O2  C8  SING N N 15 
XEK C8  C9  SING N N 16 
XEK C9  C10 DOUB Y N 17 
XEK C9  C14 SING Y N 18 
XEK C10 C11 SING Y N 19 
XEK C11 C12 DOUB Y N 20 
XEK C12 C13 SING Y N 21 
XEK C13 C14 DOUB Y N 22 
XEK C14 CL2 SING N N 23 
XEK C16 C17 SING N N 24 
XEK C17 C18 SING N N 25 
XEK C17 C23 DOUB N N 26 
XEK C18 C19 SING N N 27 
XEK C18 C20 DOUB N N 28 
XEK C19 N1  SING N N 29 
XEK C19 O3  DOUB N N 30 
XEK N1  C22 SING N N 31 
XEK C20 N2  SING N N 32 
XEK N2  C21 SING N N 33 
XEK N2  C22 SING N N 34 
XEK C22 O4  DOUB N N 35 
XEK C23 N3  SING N N 36 
XEK N3  C24 SING N N 37 
XEK C24 C25 DOUB Y N 38 
XEK C24 C28 SING Y N 39 
XEK C25 C26 SING Y N 40 
XEK C26 C27 DOUB Y N 41 
XEK C27 N4  SING Y N 42 
XEK N4  C28 DOUB Y N 43 
XEK C4  H1  SING N N 44 
XEK C8  H2  SING N N 45 
XEK C8  H3  SING N N 46 
XEK C10 H4  SING N N 47 
XEK C11 H5  SING N N 48 
XEK C12 H6  SING N N 49 
XEK C13 H7  SING N N 50 
XEK C15 H8  SING N N 51 
XEK C21 H13 SING N N 52 
XEK C21 H14 SING N N 53 
XEK C21 H12 SING N N 54 
XEK C25 H16 SING N N 55 
XEK C27 H18 SING N N 56 
XEK C16 H9  SING N N 57 
XEK C20 H11 SING N N 58 
XEK C23 H15 SING N N 59 
XEK C26 H17 SING N N 60 
XEK C28 H19 SING N N 61 
XEK N1  H10 SING N N 62 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
XEK SMILES           ACDLabs              12.01 "O=C1NC(=O)N(C)C=C1C=1C=C(c2cc(OCc3ccccc3Cl)c(F)c(Cl)c2)C(=O)N(C=1)c1cccnc1"                                                                                                       
XEK InChI            InChI                1.06  "InChI=1S/C28H19Cl2FN4O4/c1-34-14-21(26(36)33-28(34)38)18-9-20(27(37)35(13-18)19-6-4-8-32-12-19)17-10-23(30)25(31)24(11-17)39-15-16-5-2-3-7-22(16)29/h2-14H,15H2,1H3,(H,33,36,38)" 
XEK InChIKey         InChI                1.06  KIJKUSPNZALBLD-UHFFFAOYSA-N                                                                                                                                                        
XEK SMILES_CANONICAL CACTVS               3.385 "CN1C=C(C(=O)NC1=O)C2=CN(C(=O)C(=C2)c3cc(Cl)c(F)c(OCc4ccccc4Cl)c3)c5cccnc5"                                                                                                        
XEK SMILES           CACTVS               3.385 "CN1C=C(C(=O)NC1=O)C2=CN(C(=O)C(=C2)c3cc(Cl)c(F)c(OCc4ccccc4Cl)c3)c5cccnc5"                                                                                                        
XEK SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN1C=C(C(=O)NC1=O)C2=CN(C(=O)C(=C2)c3cc(c(c(c3)Cl)F)OCc4ccccc4Cl)c5cccnc5"                                                                                                        
XEK SMILES           "OpenEye OEToolkits" 2.0.7 "CN1C=C(C(=O)NC1=O)C2=CN(C(=O)C(=C2)c3cc(c(c(c3)Cl)F)OCc4ccccc4Cl)c5cccnc5"                                                                                                        
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
XEK "SYSTEMATIC NAME" ACDLabs              12.01 "(5P)-5-[(1P,3M,3'P)-3-{3-chloro-5-[(2-chlorophenyl)methoxy]-4-fluorophenyl}-2-oxo-2H-[1,3'-bipyridin]-5-yl]-1-methylpyrimidine-2,4(1H,3H)-dione" 
XEK "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "5-[5-[3-chloranyl-5-[(2-chlorophenyl)methoxy]-4-fluoranyl-phenyl]-6-oxidanylidene-1-pyridin-3-yl-pyridin-3-yl]-1-methyl-pyrimidine-2,4-dione"    
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
XEK "Create component" 2023-10-31 RCSB 
XEK "Initial release"  2024-05-15 RCSB 
# 
