data_XBK
# 
_chem_comp.id                                    XBK 
_chem_comp.name                                  4,5-DE-EPOXYPIMARICIN 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C33 H47 N O12" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2010-04-12 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        649.726 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     XBK 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        2xbk 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
XBK N    N    N 0 1 N N N 21.283 -6.146 3.060  6.852   -3.881 -0.825 N    XBK 1  
XBK C1   C1   C 0 1 N N S 26.194 -3.376 7.949  3.211   3.709  0.318  C1   XBK 2  
XBK O1   O1   O 0 1 N N N 26.095 -4.342 9.014  4.357   4.244  -0.348 O1   XBK 3  
XBK C2   C2   C 0 1 N N R 26.416 -4.099 6.603  3.507   2.275  0.791  C2   XBK 4  
XBK O2   O2   O 0 1 N N N 25.558 -6.347 6.057  5.850   2.760  1.402  O2   XBK 5  
XBK C3   C3   C 0 1 N N N 25.321 -5.077 6.285  4.648   2.290  1.775  C3   XBK 6  
XBK O3   O3   O 0 1 N N N 24.166 -4.721 6.220  4.483   1.880  2.899  O3   XBK 7  
XBK C4   C4   C 0 1 N N S 26.498 -3.037 5.527  2.250   1.723  1.467  C4   XBK 8  
XBK O4   O4   O 0 1 N N N 24.757 -2.816 3.000  2.814   -1.866 0.994  O4   XBK 9  
XBK C5   C5   C 0 1 N N N 26.861 -3.719 4.203  2.496   0.317  1.982  C5   XBK 10 
XBK O5   O5   O 0 1 N N N 22.076 -3.691 3.552  4.217   -4.140 0.143  O5   XBK 11 
XBK C6   C6   C 0 1 N N R 26.182 -3.062 2.982  1.923   -0.750 1.052  C6   XBK 12 
XBK O6   O6   O 0 1 N N N 21.511 -6.373 0.151  6.105   -2.754 -3.371 O6   XBK 13 
XBK C7   C7   C 0 1 N N R 24.136 -3.891 2.253  3.810   -1.762 -0.026 C7   XBK 14 
XBK O7   O7   O 0 1 N N N 23.709 -3.487 0.940  3.196   -1.912 -1.308 O7   XBK 15 
XBK C8   C8   C 0 1 N N S 23.076 -4.605 3.097  4.856   -2.862 0.169  C8   XBK 16 
XBK O8   O8   O 0 1 N N N 32.180 6.682  2.896  -7.658  -0.285 -0.008 O8   XBK 17 
XBK C9   C9   C 0 1 N N S 22.444 -5.770 2.311  5.887   -2.782 -0.962 C9   XBK 18 
XBK O9   O9   O 0 1 N N N 32.647 5.062  1.443  -7.376  0.376  -2.117 O9   XBK 19 
XBK C10  C10  C 0 1 N N S 22.025 -5.288 0.916  5.163   -2.900 -2.306 C10  XBK 20 
XBK O10  O10  O 0 1 N N N 28.540 1.295  5.971  -1.008  4.825  0.541  O10  XBK 21 
XBK C11  C11  C 0 1 N N R 23.154 -4.582 0.173  4.104   -1.799 -2.406 C11  XBK 22 
XBK O11  O11  O 0 1 N N N 26.582 -0.555 7.012  0.504   3.854  1.189  O11  XBK 23 
XBK C12  C12  C 0 1 N N N 22.644 -3.959 -1.110 3.336   -1.947 -3.720 C12  XBK 24 
XBK O12  O12  O 0 1 N N N 27.648 -2.180 5.855  1.167   1.729  0.524  O12  XBK 25 
XBK C13  C13  C 0 1 N N N 26.892 -1.840 2.448  0.595   -1.193 1.594  C13  XBK 26 
XBK C14  C14  C 0 1 N N N 26.852 -0.651 2.952  0.185   -2.461 1.555  C14  XBK 27 
XBK C15  C15  C 0 1 N N N 27.640 0.244  2.149  -1.142  -2.787 2.066  C15  XBK 28 
XBK C16  C16  C 0 1 N N N 27.671 1.521  2.440  -1.803  -3.931 1.837  C16  XBK 29 
XBK C17  C17  C 0 1 N N N 28.485 2.405  1.623  -3.178  -4.001 2.171  C17  XBK 30 
XBK C18  C18  C 0 1 N N N 28.575 3.706  1.909  -4.083  -3.780 1.207  C18  XBK 31 
XBK C19  C19  C 0 1 N N N 29.356 4.732  1.190  -5.500  -3.537 1.461  C19  XBK 32 
XBK C20  C20  C 0 1 N N N 29.524 5.948  1.782  -6.227  -2.979 0.481  C20  XBK 33 
XBK C21  C21  C 0 1 N N N 30.238 7.243  1.358  -7.673  -2.618 0.665  C21  XBK 34 
XBK C22  C22  C 0 1 N N R 31.757 7.439  1.760  -8.064  -1.593 -0.408 C22  XBK 35 
XBK C23  C23  C 0 1 N N N 32.225 8.867  2.111  -9.582  -1.616 -0.602 C23  XBK 36 
XBK C24  C24  C 0 1 N N N 32.417 5.348  2.595  -7.079  0.498  -0.944 C24  XBK 37 
XBK C25  C25  C 0 1 N N N 32.318 4.433  3.736  -6.121  1.466  -0.544 C25  XBK 38 
XBK C26  C26  C 0 1 N N N 31.646 3.325  3.593  -5.363  2.117  -1.454 C26  XBK 39 
XBK C27  C27  C 0 1 N N N 31.490 2.414  4.738  -4.332  3.063  -1.019 C27  XBK 40 
XBK C28  C28  C 0 1 N N N 30.825 1.287  4.540  -3.417  3.496  -1.886 C28  XBK 41 
XBK C29  C29  C 0 1 N N N 30.667 0.324  5.670  -2.326  4.436  -1.442 C29  XBK 42 
XBK C30  C30  C 0 1 N N S 29.209 0.020  5.895  -1.528  3.799  -0.307 C30  XBK 43 
XBK C31  C31  C 0 1 N N N 29.052 -0.854 7.166  -0.369  2.973  -0.877 C31  XBK 44 
XBK C32  C32  C 0 1 N N R 27.657 -1.516 7.091  0.824   3.036  0.061  C32  XBK 45 
XBK C33  C33  C 0 1 N N N 27.373 -2.449 8.263  2.028   3.654  -0.652 C33  XBK 46 
XBK HN   HN   H 0 1 N N N 21.523 -6.234 4.027  7.338   -3.828 0.058  HN   XBK 47 
XBK HNA  HNA  H 0 1 N N N 20.577 -5.446 2.954  6.400   -4.776 -0.937 HNA  XBK 48 
XBK H1   H1   H 0 1 N N N 25.266 -2.790 7.870  2.958   4.334  1.174  H1   XBK 49 
XBK HO1  HO1  H 0 1 N N N 26.073 -5.218 8.647  4.238   5.147  -0.672 HO1  XBK 50 
XBK H2   H2   H 0 1 N N N 27.344 -4.687 6.660  3.768   1.653  -0.065 H2   XBK 51 
XBK H4   H4   H 0 1 N N N 25.550 -2.483 5.458  1.991   2.390  2.289  H4   XBK 52 
XBK H5   H5   H 0 1 N N N 27.951 -3.656 4.069  3.570   0.160  2.081  H5   XBK 53 
XBK H5A  H5A  H 0 1 N N N 26.509 -4.760 4.258  2.034   0.214  2.964  H5A  XBK 54 
XBK HO5  HO5  H 0 1 N N N 22.225 -3.488 4.468  3.547   -4.259 0.831  HO5  XBK 55 
XBK H6   H6   H 0 1 N N N 26.298 -3.911 2.292  1.793   -0.333 0.053  H6   XBK 56 
XBK HO6  HO6  H 0 1 N N N 21.397 -6.099 -0.751 5.715   -2.818 -4.253 HO6  XBK 57 
XBK H7   H7   H 0 1 N N N 24.902 -4.652 2.043  4.292   -0.786 0.035  H7   XBK 58 
XBK H8   H8   H 0 1 N N N 23.575 -5.023 3.984  5.356   -2.724 1.128  H8   XBK 59 
XBK H9   H9   H 0 1 N N N 23.144 -6.609 2.182  6.411   -1.828 -0.911 H9   XBK 60 
XBK H10  H10  H 0 1 N N N 21.230 -4.541 1.057  4.682   -3.876 -2.377 H10  XBK 61 
XBK HO10 HO10 H 0 0 N N N 28.393 1.522  6.882  -1.686  5.382  0.946  HO10 XBK 62 
XBK H11  H11  H 0 1 N N N 23.914 -5.355 -0.013 4.590   -0.824 -2.376 H11  XBK 63 
XBK H12  H12  H 0 1 N N N 22.520 -2.875 -0.968 2.581   -1.163 -3.791 H12  XBK 64 
XBK H12A H12A H 0 0 N N N 23.366 -4.143 -1.919 4.028   -1.860 -4.558 H12A XBK 65 
XBK H12B H12B H 0 0 N N N 21.675 -4.407 -1.375 2.850   -2.922 -3.750 H12B XBK 66 
XBK H13  H13  H 0 1 N N N 27.491 -1.973 1.559  -0.050  -0.448 2.063  H13  XBK 67 
XBK H14  H14  H 0 1 N N N 26.308 -0.372 3.842  0.822   -3.239 1.163  H14  XBK 68 
XBK H15  H15  H 0 1 N N N 28.204 -0.135 1.309  -1.636  -2.039 2.694  H15  XBK 69 
XBK H16  H16  H 0 1 N N N 27.102 1.910  3.272  -1.325  -4.792 1.391  H16  XBK 70 
XBK H17  H17  H 0 1 N N N 29.023 2.006  0.776  -3.483  -4.234 3.181  H17  XBK 71 
XBK H18  H18  H 0 1 N N N 28.012 4.047  2.765  -3.740  -3.793 0.169  H18  XBK 72 
XBK H19  H19  H 0 1 N N N 29.783 4.524  0.220  -5.935  -3.788 2.411  H19  XBK 73 
XBK H20  H20  H 0 1 N N N 29.058 6.017  2.754  -5.734  -2.773 -0.466 H20  XBK 74 
XBK H21  H21  H 0 1 N N N 30.198 7.277  0.259  -8.289  -3.512 0.559  H21  XBK 75 
XBK H21A H21A H 0 0 N N N 29.707 8.038  1.901  -7.819  -2.186 1.655  H21A XBK 76 
XBK H22  H22  H 0 1 N N N 32.201 7.103  0.811  -7.578  -1.851 -1.349 H22  XBK 77 
XBK H23  H23  H 0 1 N N N 32.336 8.959  3.201  -9.860  -0.897 -1.372 H23  XBK 78 
XBK H23A H23A H 0 0 N N N 33.192 9.065  1.626  -9.894  -2.615 -0.907 H23A XBK 79 
XBK H23B H23B H 0 0 N N N 31.480 9.594  1.756  -10.072 -1.352 0.336  H23B XBK 80 
XBK H25  H25  H 0 1 N N N 32.792 4.672  4.676  -5.990  1.686  0.507  H25  XBK 81 
XBK H26  H26  H 0 1 N N N 31.206 3.077  2.638  -5.514  1.951  -2.513 H26  XBK 82 
XBK H27  H27  H 0 1 N N N 31.904 2.656  5.706  -4.335  3.414  0.006  H27  XBK 83 
XBK H28  H28  H 0 1 N N N 30.401 1.066  3.571  -3.462  3.168  -2.915 H28  XBK 84 
XBK H29  H29  H 0 1 N N N 31.198 -0.608 5.428  -1.661  4.643  -2.281 H29  XBK 85 
XBK H29A H29A H 0 0 N N N 31.086 0.771  6.584  -2.770  5.369  -1.094 H29A XBK 86 
XBK H30  H30  H 0 1 N N N 28.756 -0.567 5.082  -2.182  3.148  0.273  H30  XBK 87 
XBK H31  H31  H 0 1 N N N 29.838 -1.623 7.200  -0.686  1.936  -0.991 H31  XBK 88 
XBK H31A H31A H 0 0 N N N 29.146 -0.242 8.075  -0.085  3.372  -1.851 H31A XBK 89 
XBK H33  H33  H 0 1 N N N 27.128 -1.846 9.150  1.778   4.663  -0.981 H33  XBK 90 
XBK H33A H33A H 0 0 N N N 28.266 -3.064 8.448  2.293   3.043  -1.516 H33A XBK 91 
XBK HO2  HO2  H 0 1 N N N 24.741 -6.794 5.870  6.551   2.750  2.068  HO2  XBK 92 
XBK HO11 HO11 H 0 0 N N N 26.280 -0.344 7.888  -0.238  3.526  1.715  HO11 XBK 93 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
XBK N   C9   SING N N 1  
XBK C1  O1   SING N N 2  
XBK C1  C2   SING N N 3  
XBK C1  C33  SING N N 4  
XBK C2  C3   SING N N 5  
XBK C2  C4   SING N N 6  
XBK O2  C3   SING N N 7  
XBK C3  O3   DOUB N N 8  
XBK C4  C5   SING N N 9  
XBK C4  O12  SING N N 10 
XBK O4  C6   SING N N 11 
XBK O4  C7   SING N N 12 
XBK C5  C6   SING N N 13 
XBK O5  C8   SING N N 14 
XBK C6  C13  SING N N 15 
XBK O6  C10  SING N N 16 
XBK C7  O7   SING N N 17 
XBK C7  C8   SING N N 18 
XBK O7  C11  SING N N 19 
XBK C8  C9   SING N N 20 
XBK O8  C22  SING N N 21 
XBK O8  C24  SING N N 22 
XBK C9  C10  SING N N 23 
XBK O9  C24  DOUB N N 24 
XBK C10 C11  SING N N 25 
XBK O10 C30  SING N N 26 
XBK C11 C12  SING N N 27 
XBK O11 C32  SING N N 28 
XBK O12 C32  SING N N 29 
XBK C13 C14  DOUB N N 30 
XBK C14 C15  SING N N 31 
XBK C15 C16  DOUB N N 32 
XBK C16 C17  SING N N 33 
XBK C17 C18  DOUB N N 34 
XBK C18 C19  SING N N 35 
XBK C19 C20  DOUB N N 36 
XBK C20 C21  SING N N 37 
XBK C21 C22  SING N N 38 
XBK C22 C23  SING N N 39 
XBK C24 C25  SING N N 40 
XBK C25 C26  DOUB N N 41 
XBK C26 C27  SING N N 42 
XBK C27 C28  DOUB N N 43 
XBK C28 C29  SING N N 44 
XBK C29 C30  SING N N 45 
XBK C30 C31  SING N N 46 
XBK C31 C32  SING N N 47 
XBK C32 C33  SING N N 48 
XBK N   HN   SING N N 49 
XBK N   HNA  SING N N 50 
XBK C1  H1   SING N N 51 
XBK O1  HO1  SING N E 52 
XBK C2  H2   SING N N 53 
XBK C4  H4   SING N N 54 
XBK C5  H5   SING N N 55 
XBK C5  H5A  SING N E 56 
XBK O5  HO5  SING N N 57 
XBK C6  H6   SING N N 58 
XBK O6  HO6  SING N N 59 
XBK C7  H7   SING N E 60 
XBK C8  H8   SING N N 61 
XBK C9  H9   SING N N 62 
XBK C10 H10  SING N N 63 
XBK O10 HO10 SING N E 64 
XBK C11 H11  SING N N 65 
XBK C12 H12  SING N N 66 
XBK C12 H12A SING N N 67 
XBK C12 H12B SING N N 68 
XBK C13 H13  SING N N 69 
XBK C14 H14  SING N N 70 
XBK C15 H15  SING N N 71 
XBK C16 H16  SING N N 72 
XBK C17 H17  SING N N 73 
XBK C18 H18  SING N N 74 
XBK C19 H19  SING N N 75 
XBK C20 H20  SING N N 76 
XBK C21 H21  SING N E 77 
XBK C21 H21A SING N N 78 
XBK C22 H22  SING N N 79 
XBK C23 H23  SING N N 80 
XBK C23 H23A SING N E 81 
XBK C23 H23B SING N N 82 
XBK C25 H25  SING N N 83 
XBK C26 H26  SING N N 84 
XBK C27 H27  SING N N 85 
XBK C28 H28  SING N N 86 
XBK C29 H29  SING N N 87 
XBK C29 H29A SING N N 88 
XBK C30 H30  SING N N 89 
XBK C31 H31  SING N N 90 
XBK C31 H31A SING N N 91 
XBK C33 H33  SING N N 92 
XBK C33 H33A SING N N 93 
XBK O2  HO2  SING N N 94 
XBK O11 HO11 SING N N 95 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
XBK SMILES           ACDLabs              10.04 "O=C(O)C1C(O)CC3(O)OC1CC(OC2OC(C)C(O)C(N)C2O)C=CC=CC=CC=CCC(OC(=O)C=CC=CCC(O)C3)C" 
XBK SMILES_CANONICAL CACTVS               3.352 "C[C@@H]1C/C=C/C=C/C=C/C=C/[C@@H](C[C@@H]2O[C@](O)(C[C@@H](O)C/C=C/C=C/C(=O)O1)C[C@H](O)[C@H]2C(O)=O)O[C@@H]3O[C@H](C)[C@@H](O)[C@H](N)[C@@H]3O" 
XBK SMILES           CACTVS               3.352 "C[CH]1CC=CC=CC=CC=C[CH](C[CH]2O[C](O)(C[CH](O)CC=CC=CC(=O)O1)C[CH](O)[CH]2C(O)=O)O[CH]3O[CH](C)[CH](O)[CH](N)[CH]3O" 
XBK SMILES_CANONICAL "OpenEye OEToolkits" 1.6.1 "C[C@@H]1C\C=C\C=C\C=C\C=C\[C@@H](C[C@H]2[C@@H]([C@H](C[C@](O2)(C[C@H](C\C=C\C=C\C(=O)O1)O)O)O)C(=O)O)O[C@H]3[C@H]([C@H]([C@@H]([C@H](O3)C)O)N)O" 
XBK SMILES           "OpenEye OEToolkits" 1.6.1 "CC1CC=CC=CC=CC=CC(CC2C(C(CC(O2)(CC(CC=CC=CC(=O)O1)O)O)O)C(=O)O)OC3C(C(C(C(O3)C)O)N)O" 
XBK InChI            InChI                1.03  
;InChI=1S/C33H47NO12/c1-20-13-9-6-4-3-5-7-11-15-23(45-32-30(39)28(34)29(38)21(2)44-32)17-25-27(31(40)41)24(36)19-33(42,46-25)18-22(35)14-10-8-12-16-26(37)43-20/h3-12,15-16,20-25,27-30,32,35-36,38-39,42H,13-14,17-19,34H2,1-2H3,(H,40,41)/b4-3+,7-5+,9-6+,10-8+,15-11+,16-12+/t20-,21-,22+,23+,24+,25+,27-,28+,29-,30+,32+,33-/m1/s1
;
XBK InChIKey         InChI                1.03  SQKHCBHOKICFHY-FNNGFRNWSA-N 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
XBK "SYSTEMATIC NAME" ACDLabs              10.04 
"(1R,3S,5E,7E,11R,13E,15E,17E,19E,21R,23S,24R,25S)-21-[(3-amino-3,6-dideoxy-beta-D-mannopyranosyl)oxy]-1,3,25-trihydroxy-11-methyl-9-oxo-10,27-dioxabicyclo[21.3.1]heptacosa-5,7,13,15,17,19-hexaene-24-carboxylic acid"               
XBK "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 
"(1S,3R,4E,6E,8E,10E,13R,16E,18E,21S,23R,25S,26R)-3-[(2R,3S,4S,5S,6R)-4-amino-3,5-dihydroxy-6-methyl-oxan-2-yl]oxy-21,23,25-trihydroxy-13-methyl-15-oxo-14,27-dioxabicyclo[21.3.1]heptacosa-4,6,8,10,16,18-hexaene-26-carboxylic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
XBK "Create component"  2010-04-12 EBI  
XBK "Modify descriptor" 2011-06-04 RCSB 
# 
