data_WYK
# 
_chem_comp.id                                    WYK 
_chem_comp.name                                  "(2S,4S)-4-hydroxy-L-arginine" 
_chem_comp.type                                  "L-PEPTIDE LINKING" 
_chem_comp.pdbx_type                             ATOMP 
_chem_comp.formula                               "C6 H14 N4 O3" 
_chem_comp.mon_nstd_parent_comp_id               ARG 
_chem_comp.pdbx_synonyms                         "(2S,4S)-2-azanyl-5-carbamimidamido-4-oxidanyl-pentanoic acid" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-05-23 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        190.200 
_chem_comp.one_letter_code                       R 
_chem_comp.three_letter_code                     WYK 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8OM1 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
WYK N    N1  N 0 1 N N N Y Y N 230.884 240.112 284.812 -2.245 1.558  0.933  N    WYK 1  
WYK CA   C1  C 0 1 N N S Y N N 230.816 240.560 283.446 -2.261 0.508  -0.094 CA   WYK 2  
WYK C    C2  C 0 1 N N N Y N Y 232.105 240.015 282.747 -3.518 -0.312 0.046  C    WYK 3  
WYK O    O1  O 0 1 N N N Y N Y 233.185 240.045 283.340 -4.130 -0.307 1.088  O    WYK 4  
WYK CB   C3  C 0 1 N N N N N N 230.527 242.023 283.223 -1.040 -0.396 0.082  CB   WYK 5  
WYK CG   C4  C 0 1 N N S N N N 229.139 242.469 283.669 0.234  0.410  -0.184 CG   WYK 6  
WYK CD   C5  C 0 1 N N N N N N 228.813 243.814 283.052 1.458  -0.459 0.112  CD   WYK 7  
WYK NE   N2  N 0 1 N N N N N N 228.827 243.769 281.598 2.673  0.347  -0.026 NE   WYK 8  
WYK CZ   C6  C 0 1 N N N N N N 227.688 243.436 280.758 3.905  -0.223 0.193  CZ   WYK 9  
WYK OH   O2  O 0 1 N N N N N N 228.171 241.569 283.264 0.261  0.820  -1.552 OH   WYK 10 
WYK NH1  N3  N 0 1 N N N N N N 227.838 243.437 279.526 3.991  -1.481 0.524  NH1  WYK 11 
WYK NH2  N4  N 0 1 N N N N N N 226.574 243.156 281.232 5.046  0.533  0.062  NH2  WYK 12 
WYK OXT  O3  O 0 1 N Y N Y N Y 231.965 239.541 281.513 -3.957 -1.050 -0.986 OXT  WYK 13 
WYK H    H1  H 0 1 N N N Y Y N 230.079 240.434 285.310 -2.269 1.158  1.859  H    WYK 14 
WYK H2   H2  H 0 1 N Y N Y Y N 230.911 239.113 284.834 -1.445 2.162  0.820  H2   WYK 15 
WYK HA   H4  H 0 1 N N N Y N N 229.982 240.016 282.979 -2.235 0.966  -1.083 HA   WYK 16 
WYK HB2  H5  H 0 1 N N N N N N 231.272 242.609 283.781 -1.018 -0.784 1.100  HB2  WYK 17 
WYK HB3  H6  H 0 1 N N N N N N 230.626 242.233 282.148 -1.098 -1.226 -0.623 HB3  WYK 18 
WYK HG2  H7  H 0 1 N N N N N N 229.138 242.573 284.764 0.248  1.289  0.460  HG2  WYK 19 
WYK HD2  H8  H 0 1 N N N N N N 229.558 244.549 283.391 1.392  -0.845 1.130  HD2  WYK 20 
WYK HD3  H9  H 0 1 N N N N N N 227.812 244.124 283.387 1.492  -1.291 -0.591 HD3  WYK 21 
WYK HE   H10 H 0 1 N N N N N N 229.689 243.984 281.139 2.609  1.283  -0.273 HE   WYK 22 
WYK H11  H11 H 0 1 N N N N N N 228.354 240.716 283.639 0.250  0.088  -2.183 H11  WYK 23 
WYK HH11 H12 H 0 0 N N N N N N 228.772 243.680 279.262 3.186  -2.014 0.616  HH11 WYK 24 
WYK HH21 H14 H 0 0 N N N N N N 226.438 243.155 282.223 4.981  1.469  -0.184 HH21 WYK 25 
WYK HH22 H15 H 0 0 N N N N N N 225.813 242.932 280.623 5.915  0.131  0.217  HH22 WYK 26 
WYK HXT  H16 H 0 1 N Y N Y N Y 232.808 239.245 281.189 -4.767 -1.559 -0.848 HXT  WYK 27 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
WYK NH1 CZ   DOUB N N 1  
WYK CZ  NH2  SING N N 2  
WYK CZ  NE   SING N N 3  
WYK NE  CD   SING N N 4  
WYK C   O    DOUB N N 5  
WYK C   CA   SING N N 6  
WYK CD  CG   SING N N 7  
WYK CB  CA   SING N N 8  
WYK CB  CG   SING N N 9  
WYK OH  CG   SING N N 10 
WYK CA  N    SING N N 11 
WYK C   OXT  SING N N 12 
WYK N   H    SING N N 13 
WYK N   H2   SING N N 14 
WYK CA  HA   SING N N 15 
WYK CB  HB2  SING N N 16 
WYK CB  HB3  SING N N 17 
WYK CG  HG2  SING N N 18 
WYK CD  HD2  SING N N 19 
WYK CD  HD3  SING N N 20 
WYK NE  HE   SING N N 21 
WYK OH  H11  SING N N 22 
WYK NH1 HH11 SING N N 23 
WYK NH2 HH21 SING N N 24 
WYK NH2 HH22 SING N N 25 
WYK OXT HXT  SING N N 26 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
WYK InChI            InChI                1.06  "InChI=1S/C6H14N4O3/c7-4(5(12)13)1-3(11)2-10-6(8)9/h3-4,11H,1-2,7H2,(H,12,13)(H4,8,9,10)/t3-,4-/m0/s1" 
WYK InChIKey         InChI                1.06  OPCBKDJCJYBGTQ-IMJSIDKUSA-N                                                                            
WYK SMILES_CANONICAL CACTVS               3.385 "N[C@@H](C[C@H](O)CNC(N)=N)C(O)=O"                                                                     
WYK SMILES           CACTVS               3.385 "N[CH](C[CH](O)CNC(N)=N)C(O)=O"                                                                        
WYK SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C(/N)\NC[C@H](C[C@@H](C(=O)O)N)O"                                                               
WYK SMILES           "OpenEye OEToolkits" 2.0.7 "C(C(CNC(=N)N)O)C(C(=O)O)N"                                                                            
# 
_pdbx_chem_comp_identifier.comp_id           WYK 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(2~{S},4~{S})-2-azanyl-5-carbamimidamido-4-oxidanyl-pentanoic acid" 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      WYK 
_pdbx_chem_comp_synonyms.name         "(2S,4S)-2-azanyl-5-carbamimidamido-4-oxidanyl-pentanoic acid" 
_pdbx_chem_comp_synonyms.provenance   PDB 
_pdbx_chem_comp_synonyms.type         ? 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
WYK "Create component"       2023-05-23 PDBE 
WYK "Modify parent residue"  2023-07-12 PDBE 
WYK "Modify one letter code" 2023-07-13 PDBE 
WYK "Initial release"        2023-08-09 RCSB 
WYK "Modify backbone"        2023-11-03 PDBE 
WYK "Modify PCM"             2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            WYK 
_pdbx_chem_comp_pcm.modified_residue_id                ARG 
_pdbx_chem_comp_pcm.type                               Hydroxylation 
_pdbx_chem_comp_pcm.category                           "Named protein modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               ? 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   ? 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
