data_WOK
# 
_chem_comp.id                                    WOK 
_chem_comp.name                                  "(1R,2S,5S)-N-{(1S,2S)-1-(5-fluoro-1,3-benzothiazol-2-yl)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-6,6-dimethyl-3-[3-methyl-N-(trifluoroacetyl)-L-valyl]-3-azabicyclo[3.1.0]hexane-2-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C30 H37 F4 N5 O5 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "Inhibitor TKB-272, hemithioacetal bound form" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-10-09 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        655.704 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     WOK 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8UH9 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
WOK NAI N1  N 0 1 Y N N N N N 7.528  -3.479 22.242 -5.703 0.051  0.631  NAI WOK 1  
WOK CAD C1  C 0 1 Y N N N N N 8.127  -4.167 23.251 -6.836 -0.214 -0.048 CAD WOK 2  
WOK CAE C2  C 0 1 Y N N N N N 7.589  -4.489 24.449 -7.796 -1.224 0.166  CAE WOK 3  
WOK CAF C3  C 0 1 Y N N N N N 8.306  -5.182 25.435 -8.895 -1.320 -0.654 CAF WOK 4  
WOK FBS F1  F 0 1 N N N N N N 7.789  -5.471 26.529 -9.808 -2.292 -0.438 FBS WOK 5  
WOK CAA C4  C 0 1 Y N N N N N 9.607  -5.566 25.174 -9.075 -0.425 -1.702 CAA WOK 6  
WOK CAB C5  C 0 1 Y N N N N N 10.120 -5.232 23.924 -8.149 0.568  -1.927 CAB WOK 7  
WOK CAC C6  C 0 1 Y N N N N N 9.413  -4.554 22.996 -7.030 0.680  -1.106 CAC WOK 8  
WOK SAG S1  S 0 1 Y N N N N N 9.871  -4.022 21.393 -5.680 1.811  -1.116 SAG WOK 9  
WOK CAH C7  C 0 1 Y N N N N N 8.254  -3.281 21.124 -4.988 1.036  0.238  CAH WOK 10 
WOK C   C8  C 0 1 N N S N N N 7.703  -2.648 20.055 -3.697 1.459  0.889  C   WOK 11 
WOK O   O1  O 0 1 N N N N N N 6.794  -3.246 19.441 -3.860 1.469  2.309  O   WOK 12 
WOK CA  C9  C 0 1 N N S N N N 7.691  -1.080 20.180 -2.588 0.476  0.510  CA  WOK 13 
WOK CB  C10 C 0 1 N N N N N N 7.166  -0.378 18.933 -2.905 -0.901 1.097  CB  WOK 14 
WOK CG  C11 C 0 1 N N S N N N 6.735  1.023  19.352 -1.837 -1.903 0.653  CG  WOK 15 
WOK CD1 C12 C 0 1 N N N N N N 5.450  0.878  20.086 -2.382 -3.348 0.738  CD1 WOK 16 
WOK CAP C13 C 0 1 N N N N N N 4.739  2.149  19.688 -1.133 -4.129 1.202  CAP WOK 17 
WOK NAQ N2  N 0 1 N N N N N N 5.313  2.496  18.392 -0.298 -3.149 1.907  NAQ WOK 18 
WOK CD2 C14 C 0 1 N N N N N N 6.445  1.825  18.247 -0.668 -1.891 1.613  CD2 WOK 19 
WOK OAS O2  O 0 1 N N N N N N 7.164  1.955  17.257 -0.140 -0.891 2.052  OAS WOK 20 
WOK N   N3  N 0 1 N N N N N N 9.022  -0.524 20.461 -1.309 0.952  1.044  N   WOK 21 
WOK CAU C15 C 0 1 N N N N N N 9.432  -0.119 21.668 -0.212 0.957  0.261  CAU WOK 22 
WOK OAW O3  O 0 1 N N N N N N 8.748  -0.206 22.673 -0.264 0.494  -0.859 OAW WOK 23 
WOK CAV C16 C 0 1 N N S N N N 10.758 0.325  21.733 1.079  1.538  0.777  CAV WOK 24 
WOK CBA C17 C 0 1 N N R N N N 11.610 -0.686 22.472 1.057  3.078  0.669  CBA WOK 25 
WOK CBB C18 C 0 1 N N N N N N 13.120 -0.385 22.754 2.396  3.819  0.650  CBB WOK 26 
WOK CBC C19 C 0 1 N N N N N N 13.852 0.798  22.074 3.635  3.048  1.111  CBC WOK 27 
WOK CBD C20 C 0 1 N N N N N N 14.106 -1.563 23.020 2.382  5.310  0.993  CBD WOK 28 
WOK CAZ C21 C 0 1 N N S N N N 11.985 -0.081 23.782 1.753  3.393  -0.671 CAZ WOK 29 
WOK CAY C22 C 0 1 N N N N N N 11.442 1.289  23.883 2.135  2.016  -1.256 CAY WOK 30 
WOK NAX N4  N 0 1 N N N N N N 10.848 1.531  22.493 2.213  1.119  -0.079 NAX WOK 31 
WOK CBE C23 C 0 1 N N N N N N 10.362 2.651  21.964 3.112  0.144  0.159  CBE WOK 32 
WOK OBG O4  O 0 1 N N N N N N 9.883  2.697  20.834 3.013  -0.543 1.154  OBG WOK 33 
WOK CBF C24 C 0 1 N N S N N N 10.434 3.889  22.901 4.241  -0.094 -0.811 CBF WOK 34 
WOK CBO C25 C 0 1 N N N N N N 9.051  4.372  23.449 3.790  -1.086 -1.885 CBO WOK 35 
WOK CBQ C26 C 0 1 N N N N N N 8.160  4.943  22.314 4.944  -1.347 -2.855 CBQ WOK 36 
WOK CBR C27 C 0 1 N N N N N N 9.310  5.451  24.533 3.375  -2.401 -1.222 CBR WOK 37 
WOK CBP C28 C 0 1 N N N N N N 8.337  3.197  24.164 2.601  -0.503 -2.651 CBP WOK 38 
WOK NBH N5  N 0 1 N N N N N N 11.149 4.950  22.184 5.394  -0.641 -0.093 NBH WOK 39 
WOK CBI C29 C 0 1 N N N N N N 12.349 5.378  22.622 6.637  -0.473 -0.587 CBI WOK 40 
WOK OBN O5  O 0 1 N N N N N N 12.902 4.899  23.611 6.800  0.132  -1.625 OBN WOK 41 
WOK CBJ C30 C 0 1 N N N N N N 13.024 6.471  21.752 7.824  -1.036 0.152  CBJ WOK 42 
WOK FBL F2  F 0 1 N N N N N N 14.081 6.927  22.341 8.996  -0.735 -0.550 FBL WOK 43 
WOK FBM F3  F 0 1 N N N N N N 12.103 7.599  21.481 7.889  -0.471 1.430  FBM WOK 44 
WOK FBK F4  F 0 1 N N N N N N 13.426 5.820  20.482 7.689  -2.424 0.262  FBK WOK 45 
WOK H1  H1  H 0 1 N N N N N N 6.568  -4.202 24.654 -7.668 -1.926 0.977  H1  WOK 46 
WOK H2  H2  H 0 1 N N N N N N 10.197 -6.099 25.904 -9.942 -0.509 -2.340 H2  WOK 47 
WOK H3  H3  H 0 1 N N N N N N 11.131 -5.529 23.686 -8.292 1.262  -2.742 H3  WOK 48 
WOK H4  H4  H 0 1 N N N N N N 7.023  -0.825 21.016 -2.523 0.402  -0.575 H4  WOK 49 
WOK H5  H5  H 0 1 N N N N N N 6.307  -0.930 18.523 -2.914 -0.839 2.185  H5  WOK 50 
WOK H6  H6  H 0 1 N N N N N N 7.959  -0.317 18.173 -3.882 -1.230 0.744  H6  WOK 51 
WOK H7  H7  H 0 1 N N N N N N 7.501  1.475  19.999 -1.504 -1.680 -0.360 H7  WOK 52 
WOK H8  H8  H 0 1 N N N N N N 4.896  -0.014 19.757 -3.183 -3.420 1.474  H8  WOK 53 
WOK H9  H9  H 0 1 N N N N N N 5.610  0.829  21.173 -2.720 -3.695 -0.238 H9  WOK 54 
WOK H10 H10 H 0 1 N N N N N N 4.926  2.946  20.423 -1.421 -4.934 1.878  H10 WOK 55 
WOK H11 H11 H 0 1 N N N N N N 3.656  1.978  19.601 -0.599 -4.532 0.342  H11 WOK 56 
WOK H12 H12 H 0 1 N N N N N N 4.919  3.131  17.728 0.428  -3.380 2.508  H12 WOK 57 
WOK H13 H13 H 0 1 N N N N N N 9.664  -0.443 19.699 -1.252 1.263  1.961  H13 WOK 58 
WOK H14 H14 H 0 1 N N N N N N 11.170 0.476  20.724 1.247  1.232  1.810  H14 WOK 59 
WOK H15 H15 H 0 1 N N N N N N 11.304 -1.742 22.446 0.162  3.596  1.011  H15 WOK 60 
WOK H16 H16 H 0 1 N N N N N N 14.898 0.825  22.412 3.778  2.175  0.474  H16 WOK 61 
WOK H17 H17 H 0 1 N N N N N N 13.823 0.668  20.982 4.510  3.694  1.046  H17 WOK 62 
WOK H18 H18 H 0 1 N N N N N N 13.355 1.741  22.345 3.498  2.725  2.143  H18 WOK 63 
WOK H19 H19 H 0 1 N N N N N N 13.567 -2.391 23.503 1.991  5.447  2.001  H19 WOK 64 
WOK H20 H20 H 0 1 N N N N N N 14.530 -1.908 22.066 3.397  5.704  0.941  H20 WOK 65 
WOK H21 H21 H 0 1 N N N N N N 14.917 -1.220 23.679 1.749  5.840  0.282  H21 WOK 66 
WOK H22 H22 H 0 1 N N N N N N 11.946 -0.722 24.675 1.372  4.153  -1.353 H22 WOK 67 
WOK H23 H23 H 0 1 N N N N N N 12.239 2.014  24.103 1.366  1.670  -1.946 H23 WOK 68 
WOK H24 H24 H 0 1 N N N N N N 10.666 1.350  24.660 3.100  2.070  -1.759 H24 WOK 69 
WOK H25 H25 H 0 1 N N N N N N 11.039 3.598  23.772 4.519  0.849  -1.281 H25 WOK 70 
WOK H26 H26 H 0 1 N N N N N N 7.198  5.272  22.733 5.792  -1.762 -2.309 H26 WOK 71 
WOK H27 H27 H 0 1 N N N N N N 8.668  5.799  21.845 4.624  -2.054 -3.620 H27 WOK 72 
WOK H28 H28 H 0 1 N N N N N N 7.983  4.163  21.559 5.241  -0.410 -3.327 H28 WOK 73 
WOK H29 H29 H 0 1 N N N N N N 9.942  5.029  25.328 2.553  -2.216 -0.531 H29 WOK 74 
WOK H30 H30 H 0 1 N N N N N N 9.820  6.313  24.078 3.054  -3.108 -1.987 H30 WOK 75 
WOK H31 H31 H 0 1 N N N N N N 8.351  5.777  24.962 4.222  -2.816 -0.676 H31 WOK 76 
WOK H32 H32 H 0 1 N N N N N N 8.983  2.807  24.964 2.904  0.422  -3.141 H32 WOK 77 
WOK H33 H33 H 0 1 N N N N N N 7.391  3.553  24.598 2.267  -1.220 -3.402 H33 WOK 78 
WOK H34 H34 H 0 1 N N N N N N 8.129  2.398  23.437 1.787  -0.298 -1.957 H34 WOK 79 
WOK H35 H35 H 0 1 N N N N N N 10.744 5.358  21.366 5.264  -1.125 0.738  H35 WOK 80 
WOK H36 H36 H 0 1 N Y N N N N 8.530  -2.745 19.336 -3.428 2.459  0.547  H36 WOK 81 
WOK H37 H37 H 0 1 N N N N N N 6.958  -4.181 19.464 -4.100 0.611  2.683  H37 WOK 82 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
WOK OAS CD2 DOUB N N 1  
WOK CD2 NAQ SING N N 2  
WOK CD2 CG  SING N N 3  
WOK NAQ CAP SING N N 4  
WOK CB  CG  SING N N 5  
WOK CB  CA  SING N N 6  
WOK CG  CD1 SING N N 7  
WOK O   C   SING N N 8  
WOK CAP CD1 SING N N 9  
WOK C   CA  SING N N 10 
WOK C   CAH SING N N 11 
WOK CA  N   SING N N 12 
WOK N   CAU SING N N 13 
WOK FBK CBJ SING N N 14 
WOK OBG CBE DOUB N N 15 
WOK CAH SAG SING Y N 16 
WOK CAH NAI DOUB Y N 17 
WOK SAG CAC SING Y N 18 
WOK FBM CBJ SING N N 19 
WOK CAU CAV SING N N 20 
WOK CAU OAW DOUB N N 21 
WOK CAV CBA SING N N 22 
WOK CAV NAX SING N N 23 
WOK CBJ FBL SING N N 24 
WOK CBJ CBI SING N N 25 
WOK CBE NAX SING N N 26 
WOK CBE CBF SING N N 27 
WOK CBC CBB SING N N 28 
WOK NBH CBI SING N N 29 
WOK NBH CBF SING N N 30 
WOK NAI CAD SING Y N 31 
WOK CBQ CBO SING N N 32 
WOK CBA CBB SING N N 33 
WOK CBA CAZ SING N N 34 
WOK NAX CAY SING N N 35 
WOK CBI OBN DOUB N N 36 
WOK CBB CBD SING N N 37 
WOK CBB CAZ SING N N 38 
WOK CBF CBO SING N N 39 
WOK CAC CAD DOUB Y N 40 
WOK CAC CAB SING Y N 41 
WOK CAD CAE SING Y N 42 
WOK CBO CBP SING N N 43 
WOK CBO CBR SING N N 44 
WOK CAZ CAY SING N N 45 
WOK CAB CAA DOUB Y N 46 
WOK CAE CAF DOUB Y N 47 
WOK CAA CAF SING Y N 48 
WOK CAF FBS SING N N 49 
WOK CAE H1  SING N N 50 
WOK CAA H2  SING N N 51 
WOK CAB H3  SING N N 52 
WOK CA  H4  SING N N 53 
WOK CB  H5  SING N N 54 
WOK CB  H6  SING N N 55 
WOK CG  H7  SING N N 56 
WOK CD1 H8  SING N N 57 
WOK CD1 H9  SING N N 58 
WOK CAP H10 SING N N 59 
WOK CAP H11 SING N N 60 
WOK NAQ H12 SING N N 61 
WOK N   H13 SING N N 62 
WOK CAV H14 SING N N 63 
WOK CBA H15 SING N N 64 
WOK CBC H16 SING N N 65 
WOK CBC H17 SING N N 66 
WOK CBC H18 SING N N 67 
WOK CBD H19 SING N N 68 
WOK CBD H20 SING N N 69 
WOK CBD H21 SING N N 70 
WOK CAZ H22 SING N N 71 
WOK CAY H23 SING N N 72 
WOK CAY H24 SING N N 73 
WOK CBF H25 SING N N 74 
WOK CBQ H26 SING N N 75 
WOK CBQ H27 SING N N 76 
WOK CBQ H28 SING N N 77 
WOK CBR H29 SING N N 78 
WOK CBR H30 SING N N 79 
WOK CBR H31 SING N N 80 
WOK CBP H32 SING N N 81 
WOK CBP H33 SING N N 82 
WOK CBP H34 SING N N 83 
WOK NBH H35 SING N N 84 
WOK C   H36 SING N N 85 
WOK O   H37 SING N N 86 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
WOK SMILES           ACDLabs              12.01 "FC(F)(F)C(=O)NC(C(=O)N1CC2C(C1C(=O)NC(CC1CCNC1=O)C(O)c1nc3cc(F)ccc3s1)C2(C)C)C(C)(C)C"                                                                                                                                                                                          
WOK InChI            InChI                1.06  "InChI=1S/C30H37F4N5O5S/c1-28(2,3)22(38-27(44)30(32,33)34)26(43)39-12-15-19(29(15,4)5)20(39)24(42)36-17(10-13-8-9-35-23(13)41)21(40)25-37-16-11-14(31)6-7-18(16)45-25/h6-7,11,13,15,17,19-22,40H,8-10,12H2,1-5H3,(H,35,41)(H,36,42)(H,38,44)/t13-,15-,17-,19-,20-,21-,22+/m0/s1" 
WOK InChIKey         InChI                1.06  AVAISVNJDSSFQV-UDQBHXPNSA-N                                                                                                                                                                                                                                                      
WOK SMILES_CANONICAL CACTVS               3.385 "CC(C)(C)[C@H](NC(=O)C(F)(F)F)C(=O)N1C[C@H]2[C@@H]([C@H]1C(=O)N[C@@H](C[C@@H]3CCNC3=O)[C@H](O)c4sc5ccc(F)cc5n4)C2(C)C"                                                                                                                                                           
WOK SMILES           CACTVS               3.385 "CC(C)(C)[CH](NC(=O)C(F)(F)F)C(=O)N1C[CH]2[CH]([CH]1C(=O)N[CH](C[CH]3CCNC3=O)[CH](O)c4sc5ccc(F)cc5n4)C2(C)C"                                                                                                                                                                     
WOK SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC1([C@@H]2[C@H]1[C@H](N(C2)C(=O)[C@H](C(C)(C)C)NC(=O)C(F)(F)F)C(=O)N[C@@H](C[C@@H]3CCNC3=O)[C@@H](c4nc5cc(ccc5s4)F)O)C"                                                                                                                                                        
WOK SMILES           "OpenEye OEToolkits" 2.0.7 "CC1(C2C1C(N(C2)C(=O)C(C(C)(C)C)NC(=O)C(F)(F)F)C(=O)NC(CC3CCNC3=O)C(c4nc5cc(ccc5s4)F)O)C"                                                                                                                                                                                        
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
WOK "SYSTEMATIC NAME" ACDLabs              12.01 "(1R,2S,5S)-N-{(1S,2S)-1-(5-fluoro-1,3-benzothiazol-2-yl)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-6,6-dimethyl-3-[3-methyl-N-(trifluoroacetyl)-L-valyl]-3-azabicyclo[3.1.0]hexane-2-carboxamide"                                                                   
WOK "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(1~{R},2~{S},5~{S})-3-[(2~{S})-3,3-dimethyl-2-[2,2,2-tris(fluoranyl)ethanoylamino]butanoyl]-~{N}-[(1~{S},2~{S})-1-(5-fluoranyl-1,3-benzothiazol-2-yl)-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]-6,6-dimethyl-3-azabicyclo[3.1.0]hexane-2-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
WOK "Create component"   2023-10-09 RCSB 
WOK "Other modification" 2023-11-08 RCSB 
WOK "Initial release"    2023-12-13 RCSB 
WOK "Modify PCM"         2024-09-27 PDBE 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      WOK 
_pdbx_chem_comp_synonyms.name         "Inhibitor TKB-272, hemithioacetal bound form" 
_pdbx_chem_comp_synonyms.provenance   ? 
_pdbx_chem_comp_synonyms.type         ? 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            WOK 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
