data_VKK
#

_chem_comp.id                                   VKK
_chem_comp.name                                 "p-coumaroyl glucose"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C15 H18 O8"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "[(2~{S},3~{R},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl] (~{E})-3-(4-hydroxyphenyl)prop-2-enoate"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-05-25
_chem_comp.pdbx_modified_date                   2022-04-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       326.299
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    VKK
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7ONF
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBE
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
VKK  "O5'"  O1   O  0  1  N  N  N  33.454  21.536  28.130  -2.312  -0.707  -0.301  "O5'"  VKK   1  
VKK  "C5'"  C1   C  0  1  N  N  R  32.277  20.992  27.463  -3.641  -1.144  -0.007  "C5'"  VKK   2  
VKK  "C4'"  C2   C  0  1  N  N  S  32.501  21.140  25.930  -4.641  -0.086  -0.478  "C4'"  VKK   3  
VKK  "O4'"  O2   O  0  1  N  N  N  31.300  20.637  25.287  -5.966  -0.495  -0.134  "O4'"  VKK   4  
VKK  "C3'"  C3   C  0  1  N  N  S  32.736  22.579  25.530  -4.322   1.247   0.206  "C3'"  VKK   5  
VKK  "O3'"  O3   O  0  1  N  N  N  33.072  22.633  24.135  -5.205   2.259  -0.283  "O3'"  VKK   6  
VKK  "C2'"  C4   C  0  1  N  N  R  33.853  23.154  26.382  -2.874   1.636  -0.108  "C2'"  VKK   7  
VKK  "O2'"  O4   O  0  1  N  N  N  34.028  24.571  26.167  -2.542   2.841   0.584  "O2'"  VKK   8  
VKK  "C1'"  C5   C  0  1  N  N  S  33.551  22.924  27.857  -1.942   0.511   0.349  "C1'"  VKK   9  
VKK  C8     C6   C  0  1  Y  N  N  37.604  26.312  34.833   6.761   0.219  -0.340  C8     VKK  10  
VKK  C5     C7   C  0  1  Y  N  N  35.916  25.171  32.971   4.103  -0.302   0.250  C5     VKK  11  
VKK  C6     C8   C  0  1  Y  N  N  37.227  25.483  32.622   4.448   0.829  -0.500  C6     VKK  12  
VKK  C2     C9   C  0  1  N  N  N  34.239  23.932  29.857   0.370  -0.002   0.436  C2     VKK  13  
VKK  C4     C10  C  0  1  N  N  N  35.061  24.596  31.962   2.694  -0.579   0.562  C4     VKK  14  
VKK  "C6'"  C11  C  0  1  N  N  N  32.211  19.559  27.929  -3.915  -2.464  -0.730  "C6'"  VKK  15  
VKK  "O6'"  O5   O  0  1  N  N  N  33.267  18.752  27.334  -3.058  -3.481  -0.208  "O6'"  VKK  16  
VKK  "O1'"  O6   O  0  1  N  N  N  34.653  23.408  28.643  -0.594   0.841   0.009  "O1'"  VKK  17  
VKK  C3     C12  C  0  1  N  N  N  35.339  24.415  30.667   1.729   0.265   0.135  C3     VKK  18  
VKK  C7     C13  C  0  1  Y  N  N  38.073  26.035  33.558   5.769   1.086  -0.786  C7     VKK  19  
VKK  C9     C14  C  0  1  Y  N  N  36.285  26.030  35.196   6.423  -0.912   0.396  C9     VKK  20  
VKK  C10    C15  C  0  1  Y  N  N  35.447  25.454  34.257   5.105  -1.175   0.692  C10    VKK  21  
VKK  O8     O7   O  0  1  N  N  N  38.507  26.856  35.718   8.062   0.473  -0.630  O8     VKK  22  
VKK  O2     O8   O  0  1  N  N  N  33.069  23.954  30.262   0.072  -0.990   1.080  O2     VKK  23  
VKK  H1     H1   H  0  1  N  N  N  31.367  21.534  27.760  -3.746  -1.291   1.068  H1     VKK  24  
VKK  H2     H2   H  0  1  N  N  N  33.371  20.533  25.638  -4.565   0.032  -1.559  H2     VKK  25  
VKK  H3     H3   H  0  1  N  N  N  31.158  19.733  25.542  -6.653   0.130  -0.404  H3     VKK  26  
VKK  H4     H4   H  0  1  N  N  N  31.817  23.154  25.716  -4.446   1.143   1.284  H4     VKK  27  
VKK  H5     H5   H  0  1  N  N  N  33.221  23.536  23.879  -5.059   3.131   0.108  H5     VKK  28  
VKK  H6     H6   H  0  1  N  N  N  34.787  22.628  26.133  -2.762   1.788  -1.181  H6     VKK  29  
VKK  H7     H7   H  0  1  N  N  N  34.734  24.890  26.717  -1.638   3.146   0.431  H7     VKK  30  
VKK  H8     H8   H  0  1  N  N  N  32.621  23.446  28.127  -2.024   0.386   1.429  H8     VKK  31  
VKK  H9     H9   H  0  1  N  N  N  37.580  25.293  31.619   3.679   1.505  -0.844  H9     VKK  32  
VKK  H10    H10  H  0  1  N  N  N  34.084  24.275  32.290   2.430  -1.456   1.134  H10    VKK  33  
VKK  H11    H11  H  0  1  N  N  N  31.236  19.136  27.645  -4.956  -2.752  -0.579  H11    VKK  34  
VKK  H12    H12  H  0  1  N  N  N  32.317  19.534  29.024  -3.725  -2.340  -1.796  H12    VKK  35  
VKK  H13    H13  H  0  1  N  N  N  33.197  17.858  27.647  -3.178  -4.347  -0.622  H13    VKK  36  
VKK  H14    H14  H  0  1  N  N  N  36.316  24.615  30.253   1.994   1.143  -0.437  H14    VKK  37  
VKK  H15    H15  H  0  1  N  N  N  39.099  26.252  33.300   6.037   1.962  -1.357  H15    VKK  38  
VKK  H16    H16  H  0  1  N  N  N  35.926  26.257  36.189   7.197  -1.584   0.736  H16    VKK  39  
VKK  H17    H17  H  0  1  N  N  N  34.425  25.222  34.519   4.844  -2.049   1.271  H17    VKK  40  
VKK  H18    H18  H  0  1  N  N  N  38.082  27.004  36.554   8.364   0.083  -1.461  H18    VKK  41  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
VKK  "O3'"  "C3'"  SING  N  N   1  
VKK  "O4'"  "C4'"  SING  N  N   2  
VKK  "C3'"  "C4'"  SING  N  N   3  
VKK  "C3'"  "C2'"  SING  N  N   4  
VKK  "C4'"  "C5'"  SING  N  N   5  
VKK  "O2'"  "C2'"  SING  N  N   6  
VKK  "C2'"  "C1'"  SING  N  N   7  
VKK  "O6'"  "C6'"  SING  N  N   8  
VKK  "C5'"  "C6'"  SING  N  N   9  
VKK  "C5'"  "O5'"  SING  N  N  10  
VKK  "C1'"  "O5'"  SING  N  N  11  
VKK  "C1'"  "O1'"  SING  N  N  12  
VKK  "O1'"  C2     SING  N  N  13  
VKK  C2     O2     DOUB  N  N  14  
VKK  C2     C3     SING  N  N  15  
VKK  C3     C4     DOUB  N  E  16  
VKK  C4     C5     SING  N  N  17  
VKK  C6     C5     DOUB  Y  N  18  
VKK  C6     C7     SING  Y  N  19  
VKK  C5     C10    SING  Y  N  20  
VKK  C7     C8     DOUB  Y  N  21  
VKK  C10    C9     DOUB  Y  N  22  
VKK  C8     C9     SING  Y  N  23  
VKK  C8     O8     SING  N  N  24  
VKK  "C5'"  H1     SING  N  N  25  
VKK  "C4'"  H2     SING  N  N  26  
VKK  "O4'"  H3     SING  N  N  27  
VKK  "C3'"  H4     SING  N  N  28  
VKK  "O3'"  H5     SING  N  N  29  
VKK  "C2'"  H6     SING  N  N  30  
VKK  "O2'"  H7     SING  N  N  31  
VKK  "C1'"  H8     SING  N  N  32  
VKK  C6     H9     SING  N  N  33  
VKK  C4     H10    SING  N  N  34  
VKK  "C6'"  H11    SING  N  N  35  
VKK  "C6'"  H12    SING  N  N  36  
VKK  "O6'"  H13    SING  N  N  37  
VKK  C3     H14    SING  N  N  38  
VKK  C7     H15    SING  N  N  39  
VKK  C9     H16    SING  N  N  40  
VKK  C10    H17    SING  N  N  41  
VKK  O8     H18    SING  N  N  42  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
VKK  InChI             InChI                 1.03   "InChI=1S/C15H18O8/c16-7-10-12(19)13(20)14(21)15(22-10)23-11(18)6-3-8-1-4-9(17)5-2-8/h1-6,10,12-17,19-21H,7H2/b6-3+/t10-,12-,13+,14-,15+/m1/s1"  
VKK  InChIKey          InChI                 1.03   DSNCQKUYZOSARM-QVLXMGEUSA-N  
VKK  SMILES_CANONICAL  CACTVS                3.385  "OC[C@H]1O[C@@H](OC(=O)\C=C\c2ccc(O)cc2)[C@H](O)[C@@H](O)[C@@H]1O"  
VKK  SMILES            CACTVS                3.385  "OC[CH]1O[CH](OC(=O)C=Cc2ccc(O)cc2)[CH](O)[CH](O)[CH]1O"  
VKK  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1cc(ccc1/C=C/C(=O)O[C@H]2[C@@H]([C@H]([C@@H]([C@H](O2)CO)O)O)O)O"  
VKK  SMILES            "OpenEye OEToolkits"  2.0.7  "c1cc(ccc1C=CC(=O)OC2C(C(C(C(O2)CO)O)O)O)O"  
#
_pdbx_chem_comp_identifier.comp_id          VKK
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "[(2~{S},3~{R},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl] (~{E})-3-(4-hydroxyphenyl)prop-2-enoate"
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     VKK
_pdbx_chem_comp_synonyms.name        "[(2~{S},3~{R},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl] (~{E})-3-(4-hydroxyphenyl)prop-2-enoate"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
VKK  "Create component"  2021-05-25  PDBE  
VKK  "Initial release"   2022-04-06  RCSB  
##
