data_VJK
# 
_chem_comp.id                                    VJK 
_chem_comp.name                                  "(2R)-2-methyl-2-[[2-(1H-pyrrolo[2,3-b]pyridin-3-yl)pyrimidin-4-yl]amino]-N-[2,2,2-tris(fluoranyl)ethyl]butanamide" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C18 H19 F3 N6 O" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "Decernotinib; Adelatinib; VX-509" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2015-03-20 
_chem_comp.pdbx_modified_date                    2020-05-26 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        392.378 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     VJK 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4YTI 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
VJK C1  C1  C 0 1 N N N 13.989 14.299 5.170 -1.877 2.951  0.833  C1  VJK 1  
VJK C2  C2  C 0 1 N N R 15.383 14.891 5.437 -2.215 1.801  -0.118 C2  VJK 2  
VJK C3  C3  C 0 1 N N N 15.412 15.639 6.757 -2.237 2.319  -1.558 C3  VJK 3  
VJK C4  C4  C 0 1 N N N 15.781 15.888 4.329 -3.569 1.239  0.234  C4  VJK 4  
VJK C5  C5  C 0 1 N N N 16.813 14.917 2.273 -5.189 -0.581 0.259  C5  VJK 5  
VJK C6  C6  C 0 1 N N N 15.796 14.909 1.174 -5.275 -2.035 -0.209 C6  VJK 6  
VJK C7  C7  C 0 1 Y N N 16.574 12.518 4.919 0.136  1.051  -0.184 C7  VJK 7  
VJK C8  C8  C 0 1 Y N N 17.831 11.908 5.151 0.522  2.322  -0.618 C8  VJK 8  
VJK C9  C9  C 0 1 Y N N 18.002 10.595 4.741 1.867  2.579  -0.796 C9  VJK 9  
VJK C10 C10 C 0 1 Y N N 15.768 10.611 3.977 2.354  0.418  -0.151 C10 VJK 10 
VJK C11 C11 C 0 1 Y N N 14.658 9.923  3.307 3.370  -0.624 0.110  C11 VJK 11 
VJK C12 C12 C 0 1 Y N N 14.738 8.607  2.925 3.141  -1.898 0.522  C12 VJK 12 
VJK C13 C13 C 0 1 Y N N 12.768 9.329  2.120 5.374  -1.733 0.326  C13 VJK 13 
VJK F2  F1  F 0 1 N N N 16.271 14.430 0.112 -6.531 -2.556 0.118  F2  VJK 14 
VJK F   F2  F 0 1 N N N 15.360 16.057 0.878 -5.093 -2.090 -1.595 F   VJK 15 
VJK F1  F3  F 0 1 N N N 14.779 14.239 1.452 -4.279 -2.788 0.423  F1  VJK 16 
VJK N   N1  N 0 1 N N N 16.835 15.488 3.621 -3.873 -0.035 -0.083 N   VJK 17 
VJK O   O1  O 0 1 N N N 15.125 16.911 4.101 -4.384 1.934  0.803  O   VJK 18 
VJK C   C14 C 0 1 N N N 13.096 15.056 4.189 -1.729 2.408  2.256  C   VJK 19 
VJK N1  N2  N 0 1 N N N 16.359 13.791 5.475 -1.203 0.749  0.007  N1  VJK 20 
VJK N3  N3  N 0 1 Y N N 15.551 11.889 4.317 1.071  0.133  0.036  N3  VJK 21 
VJK N2  N4  N 0 1 Y N N 17.050 9.860  4.168 2.748  1.621  -0.552 N2  VJK 22 
VJK C14 C15 C 0 1 Y N N 13.335 10.399 2.828 4.828  -0.488 -0.031 C14 VJK 23 
VJK C15 C16 C 0 1 Y N N 12.667 11.620 2.745 5.676  0.551  -0.413 C15 VJK 24 
VJK C16 C17 C 0 1 Y N N 11.519 11.730 1.960 7.038  0.309  -0.424 C16 VJK 25 
VJK C17 C18 C 0 1 Y N N 11.060 10.624 1.285 7.508  -0.943 -0.060 C17 VJK 26 
VJK N5  N5  N 0 1 Y N N 11.647 9.406  1.350 6.689  -1.910 0.296  N5  VJK 27 
VJK N4  N6  N 0 1 Y N N 13.600 8.244  2.217 4.324  -2.559 0.654  N4  VJK 28 
VJK H1  H1  H 0 1 N N N 13.459 14.249 6.132 -0.941 3.416  0.522  H1  VJK 29 
VJK H2  H2  H 0 1 N N N 14.129 13.282 4.776 -2.677 3.691  0.807  H2  VJK 30 
VJK H3  H3  H 0 1 N N N 15.132 14.956 7.572 -1.222 2.568  -1.870 H3  VJK 31 
VJK H4  H4  H 0 1 N N N 16.425 16.028 6.936 -2.641 1.549  -2.215 H4  VJK 32 
VJK H5  H5  H 0 1 N N N 14.700 16.476 6.720 -2.863 3.210  -1.614 H5  VJK 33 
VJK H6  H6  H 0 1 N N N 16.999 13.847 2.451 -5.964 0.006  -0.233 H6  VJK 34 
VJK H7  H7  H 0 1 N N N 17.695 15.368 1.795 -5.330 -0.537 1.339  H7  VJK 35 
VJK H8  H8  H 0 1 N N N 18.632 12.449 5.633 -0.216 3.087  -0.810 H8  VJK 36 
VJK H9  H9  H 0 1 N N N 18.969 10.139 4.896 2.198  3.551  -1.130 H9  VJK 37 
VJK H10 H10 H 0 1 N N N 15.566 7.949  3.143 2.166  -2.322 0.716  H10 VJK 38 
VJK H11 H11 H 0 1 N N N 17.731 15.587 4.053 -3.221 -0.590 -0.539 H11 VJK 39 
VJK H12 H12 H 0 1 N N N 12.134 14.531 4.088 -1.488 3.227  2.934  H12 VJK 40 
VJK H13 H13 H 0 1 N N N 12.920 16.075 4.565 -2.664 1.943  2.567  H13 VJK 41 
VJK H14 H14 H 0 1 N N N 13.591 15.107 3.208 -0.929 1.668  2.282  H14 VJK 42 
VJK H15 H15 H 0 1 N N N 16.385 13.585 6.453 -1.469 -0.158 0.224  H15 VJK 43 
VJK H16 H16 H 0 1 N N N 13.037 12.478 3.287 5.282  1.517  -0.692 H16 VJK 44 
VJK H17 H17 H 0 1 N N N 10.997 12.673 1.884 7.728  1.087  -0.715 H17 VJK 45 
VJK H18 H18 H 0 1 N N N 10.181 10.733 0.667 8.572  -1.131 -0.070 H18 VJK 46 
VJK H19 H19 H 0 1 N N N 13.417 7.337  1.839 4.413  -3.482 0.939  H19 VJK 47 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
VJK F2  C6  SING N N 1  
VJK F   C6  SING N N 2  
VJK C6  F1  SING N N 3  
VJK C6  C5  SING N N 4  
VJK C17 N5  DOUB Y N 5  
VJK C17 C16 SING Y N 6  
VJK N5  C13 SING Y N 7  
VJK C16 C15 DOUB Y N 8  
VJK C13 N4  SING Y N 9  
VJK C13 C14 DOUB Y N 10 
VJK N4  C12 SING Y N 11 
VJK C5  N   SING N N 12 
VJK C15 C14 SING Y N 13 
VJK C14 C11 SING Y N 14 
VJK C12 C11 DOUB Y N 15 
VJK C11 C10 SING N N 16 
VJK N   C4  SING N N 17 
VJK C10 N2  DOUB Y N 18 
VJK C10 N3  SING Y N 19 
VJK O   C4  DOUB N N 20 
VJK N2  C9  SING Y N 21 
VJK C   C1  SING N N 22 
VJK N3  C7  DOUB Y N 23 
VJK C4  C2  SING N N 24 
VJK C9  C8  DOUB Y N 25 
VJK C7  C8  SING Y N 26 
VJK C7  N1  SING N N 27 
VJK C1  C2  SING N N 28 
VJK C2  N1  SING N N 29 
VJK C2  C3  SING N N 30 
VJK C1  H1  SING N N 31 
VJK C1  H2  SING N N 32 
VJK C3  H3  SING N N 33 
VJK C3  H4  SING N N 34 
VJK C3  H5  SING N N 35 
VJK C5  H6  SING N N 36 
VJK C5  H7  SING N N 37 
VJK C8  H8  SING N N 38 
VJK C9  H9  SING N N 39 
VJK C12 H10 SING N N 40 
VJK N   H11 SING N N 41 
VJK C   H12 SING N N 42 
VJK C   H13 SING N N 43 
VJK C   H14 SING N N 44 
VJK N1  H15 SING N N 45 
VJK C15 H16 SING N N 46 
VJK C16 H17 SING N N 47 
VJK C17 H18 SING N N 48 
VJK N4  H19 SING N N 49 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
VJK SMILES           ACDLabs              12.01 "C(C(Nc1ccnc(n1)c2cnc3c2cccn3)(C)C(NCC(F)(F)F)=O)C"                                                                                                                      
VJK InChI            InChI                1.03  "InChI=1S/C18H19F3N6O/c1-3-17(2,16(28)25-10-18(19,20)21)27-13-6-8-23-15(26-13)12-9-24-14-11(12)5-4-7-22-14/h4-9H,3,10H2,1-2H3,(H,22,24)(H,25,28)(H,23,26,27)/t17-/m1/s1" 
VJK InChIKey         InChI                1.03  ASUGUQWIHMTFJL-QGZVFWFLSA-N                                                                                                                                              
VJK SMILES_CANONICAL CACTVS               3.385 "CC[C@@](C)(Nc1ccnc(n1)c2c[nH]c3ncccc23)C(=O)NCC(F)(F)F"                                                                                                                 
VJK SMILES           CACTVS               3.385 "CC[C](C)(Nc1ccnc(n1)c2c[nH]c3ncccc23)C(=O)NCC(F)(F)F"                                                                                                                   
VJK SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "CC[C@](C)(C(=O)NCC(F)(F)F)Nc1ccnc(n1)c2c[nH]c3c2cccn3"                                                                                                                  
VJK SMILES           "OpenEye OEToolkits" 1.9.2 "CCC(C)(C(=O)NCC(F)(F)F)Nc1ccnc(n1)c2c[nH]c3c2cccn3"                                                                                                                     
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
VJK "SYSTEMATIC NAME" ACDLabs              12.01 "N~2~-[2-(1H-pyrrolo[2,3-b]pyridin-3-yl)pyrimidin-4-yl]-N-(2,2,2-trifluoroethyl)-D-isovalinamide"                   
VJK "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "(2R)-2-methyl-2-[[2-(1H-pyrrolo[2,3-b]pyridin-3-yl)pyrimidin-4-yl]amino]-N-[2,2,2-tris(fluoranyl)ethyl]butanamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
VJK "Create component" 2015-03-20 RCSB 
VJK "Initial release"  2015-08-12 RCSB 
VJK "Modify synonyms"  2020-05-26 PDBE 
# 
loop_
_pdbx_chem_comp_synonyms.ordinal 
_pdbx_chem_comp_synonyms.comp_id 
_pdbx_chem_comp_synonyms.name 
_pdbx_chem_comp_synonyms.provenance 
_pdbx_chem_comp_synonyms.type 
1 VJK Decernotinib ? ? 
2 VJK Adelatinib   ? ? 
3 VJK VX-509       ? ? 
# 
