data_V7K
#

_chem_comp.id                                   V7K
_chem_comp.name                                 "(2~{S})-2-azanyl-5-[[(2~{R})-1-(2-hydroxy-2-oxoethylamino)-3-[(7-nitro-2,1,3-benzoxadiazol-4-yl)sulfanyl]-1-oxidanylidene-propan-2-yl]amino]-5-oxidanylidene-pentanoic acid"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C16 H18 N6 O9 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-04-23
_chem_comp.pdbx_modified_date                   2022-04-15
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       470.414
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    V7K
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7OBO
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBE
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
V7K  O8   O1   O   0  1  N  N  N  18.192   3.097  -13.359  -8.288   2.278   0.250  O8   V7K   1  
V7K  C15  C1   C   0  1  N  N  N  19.269   3.666  -13.539  -7.248   2.781  -0.105  C15  V7K   2  
V7K  O7   O2   O   0  1  N  N  N  20.043   3.266  -14.572  -7.223   3.577  -1.186  O7   V7K   3  
V7K  C    C2   C   0  1  N  N  S  19.667   4.803  -12.614  -5.982   2.521   0.668  C    V7K   4  
V7K  N    N1   N   0  1  N  N  N  21.134   4.977  -12.413  -6.320   2.057   2.020  N    V7K   5  
V7K  C1   C3   C   0  1  N  N  N  19.153   6.107  -13.191  -5.158   1.449  -0.048  C1   V7K   6  
V7K  C2   C4   C   0  1  N  N  N  17.629   6.267  -13.031  -3.817   1.273   0.667  C2   V7K   7  
V7K  C3   C5   C   0  1  N  N  N  17.209   7.660  -13.494  -3.006   0.217  -0.038  C3   V7K   8  
V7K  O6   O3   O   0  1  N  N  N  18.046   8.547  -13.573  -3.456  -0.341  -1.016  O6   V7K   9  
V7K  N1   N2   N   0  1  N  N  N  15.908   7.876  -13.695  -1.780  -0.108   0.419  N1   V7K  10  
V7K  C4   C6   C   0  1  N  N  R  15.262   9.179  -13.899  -0.992  -1.135  -0.267  C4   V7K  11  
V7K  C12  C7   C   0  1  N  N  N  14.393   9.503  -12.676  -1.385  -2.496   0.246  C12  V7K  12  
V7K  O5   O4   O   0  1  N  N  N  13.492   8.739  -12.369  -2.240  -2.599   1.100  O5   V7K  13  
V7K  N5   N3   N   0  1  N  N  N  14.593  10.632  -11.983  -0.787  -3.600  -0.244  N5   V7K  14  
V7K  C13  C8   C   0  1  N  N  N  13.607  11.230  -11.120  -1.170  -4.923   0.254  C13  V7K  15  
V7K  C14  C9   C   0  1  N  N  N  14.245  11.810   -9.898  -0.359  -5.980  -0.451  C14  V7K  16  
V7K  O4   O5   O   0  1  N  N  N  13.583  12.490   -9.127   0.456  -5.660  -1.285  O4   V7K  17  
V7K  O3   O6   O   0  1  N  N  N  15.512  11.529   -9.656  -0.541  -7.276  -0.153  O3   V7K  18  
V7K  C5   C10  C   0  1  N  N  N  14.372   9.209  -15.161   0.496  -0.899   0.002  C5   V7K  19  
V7K  S    S1   S   0  1  N  N  N  14.052  10.919  -15.495   0.970   0.739  -0.616  S    V7K  20  
V7K  C6   C11  C   0  1  Y  N  N  12.669  11.581  -16.272   2.686   0.829  -0.225  C6   V7K  21  
V7K  C11  C12  C   0  1  Y  N  N  11.918  10.873  -17.350   3.464   2.018  -0.556  C11  V7K  22  
V7K  N4   N4   N   0  1  Y  N  N  12.026   9.668  -17.959   3.289   3.182  -1.121  N4   V7K  23  
V7K  O2   O7   O   0  1  Y  N  N  11.012   9.661  -18.834   4.342   3.787  -1.121  O2   V7K  24  
V7K  N3   N5   N   0  1  Y  N  N  10.229  10.745  -18.881   5.291   3.214  -0.623  N3   V7K  25  
V7K  C10  C13  C   0  1  Y  N  N  10.750  11.567  -17.949   4.904   2.037  -0.196  C10  V7K  26  
V7K  C9   C14  C   0  1  Y  N  N  10.395  12.933  -17.471   5.452   0.913   0.447  C9   V7K  27  
V7K  N2   N6   N   1  1  N  N  N   9.281  13.572  -18.053   6.886   0.900   0.820  N2   V7K  28  
V7K  O1   O8   O   0  1  N  N  N   8.262  12.821  -18.691   7.589   1.863   0.571  O1   V7K  29  
V7K  O    O9   O  -1  1  N  N  N   9.190  14.963  -17.997   7.362  -0.073   1.377  O    V7K  30  
V7K  C8   C15  C   0  1  Y  N  N  11.162  13.534  -16.463   4.671  -0.160   0.726  C8   V7K  31  
V7K  C7   C16  C   0  1  Y  N  N  12.249  12.874  -15.891   3.314  -0.211   0.401  C7   V7K  32  
V7K  H17  H1   H   0  1  N  N  N  19.612   2.558  -15.036  -8.062   3.717  -1.648  H17  V7K  33  
V7K  H    H2   H   0  1  N  N  N  19.190   4.641  -11.636  -5.401   3.441   0.734  H    V7K  34  
V7K  H2   H0   H   0  1  N  N  N  21.297   5.744  -11.793  -6.808   2.773   2.536  H2   V7K  35  
V7K  H3   H4   H   0  1  N  N  N  21.518   4.142  -12.018  -6.859   1.205   1.986  H3   V7K  36  
V7K  H5   H6   H   0  1  N  N  N  19.400   6.140  -14.262  -5.702   0.504  -0.036  H5   V7K  37  
V7K  H4   H7   H   0  1  N  N  N  19.651   6.941  -12.675  -4.983   1.754  -1.079  H4   V7K  38  
V7K  H7   H8   H   0  1  N  N  N  17.356   6.135  -11.974  -3.273   2.217   0.655  H7   V7K  39  
V7K  H6   H9   H   0  1  N  N  N  17.115   5.508  -13.640  -3.993   0.968   1.699  H6   V7K  40  
V7K  H8   H10  H   0  1  N  N  N  15.314   7.071  -13.708  -1.420   0.338   1.201  H8   V7K  41  
V7K  H1   H11  H   0  1  N  N  N  16.032   9.958  -13.998  -1.180  -1.082  -1.339  H1   V7K  42  
V7K  H13  H12  H   0  1  N  N  N  15.479  11.087  -12.070  -0.103  -3.518  -0.928  H13  V7K  43  
V7K  H14  H13  H   0  1  N  N  N  13.087  12.029  -11.668  -0.981  -4.976   1.327  H14  V7K  44  
V7K  H15  H14  H   0  1  N  N  N  12.881  10.461  -10.816  -2.230  -5.091   0.063  H15  V7K  45  
V7K  H16  H15  H   0  1  N  N  N  15.774  11.929   -8.835   0.003  -7.917  -0.632  H16  V7K  46  
V7K  H10  H16  H   0  1  N  N  N  13.429   8.673  -14.976   0.685  -0.952   1.074  H10  V7K  47  
V7K  H9   H17  H   0  1  N  N  N  14.897   8.746  -16.010   1.083  -1.663  -0.508  H9   V7K  48  
V7K  H12  H18  H   0  1  N  N  N  10.906  14.527  -16.123   5.117  -1.011   1.220  H12  V7K  49  
V7K  H11  H19  H   0  1  N  N  N  12.801  13.380  -15.113   2.745  -1.093   0.655  H11  V7K  50  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
V7K  N3   O2   SING  Y  N   1  
V7K  N3   C10  DOUB  Y  N   2  
V7K  O2   N4   SING  Y  N   3  
V7K  O1   N2   DOUB  N  N   4  
V7K  N2   O    SING  N  N   5  
V7K  N2   C9   SING  N  N   6  
V7K  N4   C11  DOUB  Y  N   7  
V7K  C10  C9   SING  Y  N   8  
V7K  C10  C11  SING  Y  N   9  
V7K  C9   C8   DOUB  Y  N  10  
V7K  C11  C6   SING  Y  N  11  
V7K  C8   C7   SING  Y  N  12  
V7K  C6   C7   DOUB  Y  N  13  
V7K  C6   S    SING  N  N  14  
V7K  S    C5   SING  N  N  15  
V7K  C5   C4   SING  N  N  16  
V7K  O7   C15  SING  N  N  17  
V7K  C4   N1   SING  N  N  18  
V7K  C4   C12  SING  N  N  19  
V7K  N1   C3   SING  N  N  20  
V7K  O6   C3   DOUB  N  N  21  
V7K  C15  O8   DOUB  N  N  22  
V7K  C15  C    SING  N  N  23  
V7K  C3   C2   SING  N  N  24  
V7K  C1   C2   SING  N  N  25  
V7K  C1   C    SING  N  N  26  
V7K  C12  O5   DOUB  N  N  27  
V7K  C12  N5   SING  N  N  28  
V7K  C    N    SING  N  N  29  
V7K  N5   C13  SING  N  N  30  
V7K  C13  C14  SING  N  N  31  
V7K  C14  O3   SING  N  N  32  
V7K  C14  O4   DOUB  N  N  33  
V7K  O7   H17  SING  N  N  34  
V7K  C    H    SING  N  N  35  
V7K  N    H2   SING  N  N  36  
V7K  N    H3   SING  N  N  37  
V7K  C1   H5   SING  N  N  38  
V7K  C1   H4   SING  N  N  39  
V7K  C2   H7   SING  N  N  40  
V7K  C2   H6   SING  N  N  41  
V7K  N1   H8   SING  N  N  42  
V7K  C4   H1   SING  N  N  43  
V7K  N5   H13  SING  N  N  44  
V7K  C13  H14  SING  N  N  45  
V7K  C13  H15  SING  N  N  46  
V7K  O3   H16  SING  N  N  47  
V7K  C5   H10  SING  N  N  48  
V7K  C5   H9   SING  N  N  49  
V7K  C8   H12  SING  N  N  50  
V7K  C7   H11  SING  N  N  51  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
V7K  InChI             InChI                 1.03   "InChI=1S/C16H18N6O9S/c17-7(16(27)28)1-4-11(23)19-8(15(26)18-5-12(24)25)6-32-10-3-2-9(22(29)30)13-14(10)21-31-20-13/h2-3,7-8H,1,4-6,17H2,(H,18,26)(H,19,23)(H,24,25)(H,27,28)/t7-,8-/m0/s1"  
V7K  InChIKey          InChI                 1.03   DLEOMDYTCAPLNH-YUMQZZPRSA-N  
V7K  SMILES_CANONICAL  CACTVS                3.385  "N[C@@H](CCC(=O)N[C@@H](CSc1ccc(c2nonc12)[N+]([O-])=O)C(=O)NCC(O)=O)C(O)=O"  
V7K  SMILES            CACTVS                3.385  "N[CH](CCC(=O)N[CH](CSc1ccc(c2nonc12)[N+]([O-])=O)C(=O)NCC(O)=O)C(O)=O"  
V7K  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1cc(c2c(c1[N+](=O)[O-])non2)SC[C@@H](C(=O)NCC(=O)O)NC(=O)CC[C@@H](C(=O)O)N"  
V7K  SMILES            "OpenEye OEToolkits"  2.0.7  "c1cc(c2c(c1[N+](=O)[O-])non2)SCC(C(=O)NCC(=O)O)NC(=O)CCC(C(=O)O)N"  
#
_pdbx_chem_comp_identifier.comp_id          V7K
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "(2~{S})-2-azanyl-5-[[(2~{R})-1-(2-hydroxy-2-oxoethylamino)-3-[(7-nitro-2,1,3-benzoxadiazol-4-yl)sulfanyl]-1-oxidanylidene-propan-2-yl]amino]-5-oxidanylidene-pentanoic acid"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
V7K  "Create component"  2021-04-23  PDBE  
V7K  "Modify atom id"    2021-04-26  PDBE  
V7K  "Initial release"   2022-04-20  RCSB  
##
