data_V1K
# 
_chem_comp.id                                    V1K 
_chem_comp.name                                  "2-chloranyl-6-methoxy-1-(4-methylphenyl)sulfonyl-benzimidazole" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C15 H13 Cl N2 O3 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2021-04-06 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        336.793 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     V1K 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7O3P 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
V1K C02 C1  C  0 1 N N N N N N -19.675 -20.770 4.560  -4.669 3.066  -1.598 C02 V1K 1  
V1K C03 C2  C  0 1 Y N N N N N -18.672 -20.903 3.434  -3.713 2.164  -0.861 C03 V1K 2  
V1K C04 C3  C  0 1 Y N N N N N -18.684 -19.860 2.526  -3.940 0.801  -0.821 C04 V1K 3  
V1K C05 C4  C  0 1 Y N N N N N -17.816 -19.881 1.466  -3.064 -0.027 -0.145 C05 V1K 4  
V1K C06 C5  C  0 1 Y N N N N N -16.942 -20.948 1.339  -1.960 0.509  0.492  C06 V1K 5  
V1K C09 C6  C  0 1 Y N N N N N -17.367 -22.656 -1.599 1.511  -0.373 0.016  C09 V1K 6  
V1K C10 C7  C  0 1 Y N N N N N -16.822 -23.921 -1.249 2.110  0.778  0.507  C10 V1K 7  
V1K C11 C8  C  0 1 Y N N N N N -17.318 -25.112 -1.802 3.348  1.165  0.025  C11 V1K 8  
V1K C13 C9  C  0 1 N N N N N N -17.411 -27.517 -1.843 5.216  2.635  -0.036 C13 V1K 9  
V1K C14 C10 C  0 1 Y N N N N N -18.368 -25.060 -2.722 3.992  0.406  -0.947 C14 V1K 10 
V1K C15 C11 C  0 1 Y N N N N N -18.904 -23.820 -3.066 3.413  -0.730 -1.439 C15 V1K 11 
V1K C16 C12 C  0 1 Y N N N N N -18.391 -22.616 -2.494 2.167  -1.141 -0.961 C16 V1K 12 
V1K C18 C13 C  0 1 Y N N N N N -17.931 -20.545 -1.884 0.274  -2.122 -0.526 C18 V1K 13 
V1K C22 C14 C  0 1 Y N N N N N -16.934 -22.021 2.227  -1.732 1.872  0.451  C22 V1K 14 
V1K C23 C15 C  0 1 Y N N N N N -17.808 -21.995 3.309  -2.606 2.698  -0.230 C23 V1K 15 
V1K N08 N1  N  0 1 Y N N N N N -17.082 -21.364 -1.249 0.318  -1.021 0.274  N08 V1K 16 
V1K N17 N2  N  0 1 Y N N N N N -18.721 -21.305 -2.654 1.357  -2.196 -1.245 N17 V1K 17 
V1K O12 O1  O  0 1 N N N N N N -16.751 -26.347 -1.436 3.938  2.292  0.504  O12 V1K 18 
V1K O20 O2  O  0 1 N N N N N N -15.330 -19.537 -0.302 -0.186 0.268  2.318  O20 V1K 19 
V1K O21 O3  O  0 1 N N N N N N -14.750 -21.793 -0.165 -1.576 -1.714 1.696  O21 V1K 20 
V1K S07 S1  S  0 1 N N N N N N -15.891 -20.880 -0.124 -0.843 -0.546 1.355  S07 V1K 21 
V1K CL1 CL1 CL 0 0 N N N N N N -18.002 -18.755 -1.765 -1.030 -3.267 -0.572 CL1 V1K 22 
V1K H1  H1  H  0 1 N N N N N N -20.625 -21.238 4.263  -5.451 3.400  -0.917 H1  V1K 23 
V1K H2  H2  H  0 1 N N N N N N -19.286 -21.271 5.459  -4.129 3.930  -1.984 H2  V1K 24 
V1K H3  H3  H  0 1 N N N N N N -19.843 -19.705 4.777  -5.119 2.519  -2.427 H3  V1K 25 
V1K H4  H4  H  0 1 N N N N N N -19.371 -19.036 2.651  -4.803 0.382  -1.318 H4  V1K 26 
V1K H5  H5  H  0 1 N N N N N N -17.813 -19.080 0.742  -3.241 -1.092 -0.113 H5  V1K 27 
V1K H6  H6  H  0 1 N N N N N N -16.007 -23.967 -0.541 1.612  1.370  1.261  H6  V1K 28 
V1K H7  H7  H  0 1 N N N N N N -16.854 -28.396 -1.486 5.573  3.553  0.431  H7  V1K 29 
V1K H8  H8  H  0 1 N N N N N N -18.427 -27.530 -1.421 5.922  1.829  0.162  H8  V1K 30 
V1K H9  H9  H  0 1 N N N N N N -17.470 -27.542 -2.941 5.127  2.785  -1.112 H9  V1K 31 
V1K H10 H10 H  0 1 N N N N N N -18.759 -25.967 -3.160 4.957  0.717  -1.317 H10 V1K 32 
V1K H11 H11 H  0 1 N N N N N N -19.718 -23.769 -3.774 3.921  -1.311 -2.194 H11 V1K 33 
V1K H12 H12 H  0 1 N N N N N N -16.264 -22.855 2.079  -0.870 2.290  0.949  H12 V1K 34 
V1K H13 H13 H  0 1 N N N N N N -17.819 -22.797 4.033  -2.428 3.763  -0.262 H13 V1K 35 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
V1K C15 C14 DOUB Y N 1  
V1K C15 C16 SING Y N 2  
V1K C14 C11 SING Y N 3  
V1K N17 C16 SING Y N 4  
V1K N17 C18 DOUB Y N 5  
V1K C16 C09 DOUB Y N 6  
V1K C18 CL1 SING N N 7  
V1K C18 N08 SING Y N 8  
V1K C13 O12 SING N N 9  
V1K C11 O12 SING N N 10 
V1K C11 C10 DOUB Y N 11 
V1K C09 C10 SING Y N 12 
V1K C09 N08 SING Y N 13 
V1K N08 S07 SING N N 14 
V1K O20 S07 DOUB N N 15 
V1K O21 S07 DOUB N N 16 
V1K S07 C06 SING N N 17 
V1K C06 C05 DOUB Y N 18 
V1K C06 C22 SING Y N 19 
V1K C05 C04 SING Y N 20 
V1K C22 C23 DOUB Y N 21 
V1K C04 C03 DOUB Y N 22 
V1K C23 C03 SING Y N 23 
V1K C03 C02 SING N N 24 
V1K C02 H1  SING N N 25 
V1K C02 H2  SING N N 26 
V1K C02 H3  SING N N 27 
V1K C04 H4  SING N N 28 
V1K C05 H5  SING N N 29 
V1K C10 H6  SING N N 30 
V1K C13 H7  SING N N 31 
V1K C13 H8  SING N N 32 
V1K C13 H9  SING N N 33 
V1K C14 H10 SING N N 34 
V1K C15 H11 SING N N 35 
V1K C22 H12 SING N N 36 
V1K C23 H13 SING N N 37 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
V1K InChI            InChI                1.03  "InChI=1S/C15H13ClN2O3S/c1-10-3-6-12(7-4-10)22(19,20)18-14-9-11(21-2)5-8-13(14)17-15(18)16/h3-9H,1-2H3" 
V1K InChIKey         InChI                1.03  WYUZKMIXXDZEOS-UHFFFAOYSA-N                                                                             
V1K SMILES_CANONICAL CACTVS               3.385 "COc1ccc2nc(Cl)n(c2c1)[S](=O)(=O)c3ccc(C)cc3"                                                           
V1K SMILES           CACTVS               3.385 "COc1ccc2nc(Cl)n(c2c1)[S](=O)(=O)c3ccc(C)cc3"                                                           
V1K SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1ccc(cc1)S(=O)(=O)n2c3cc(ccc3nc2Cl)OC"                                                               
V1K SMILES           "OpenEye OEToolkits" 2.0.7 "Cc1ccc(cc1)S(=O)(=O)n2c3cc(ccc3nc2Cl)OC"                                                               
# 
_pdbx_chem_comp_identifier.comp_id           V1K 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "2-chloranyl-6-methoxy-1-(4-methylphenyl)sulfonyl-benzimidazole" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
V1K "Create component" 2021-04-06 PDBE 
V1K "Initial release"  2021-06-09 RCSB 
V1K "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            V1K 
_pdbx_chem_comp_pcm.modified_residue_id                LYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C02 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   NZ 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
