data_TVK
#

_chem_comp.id                                   TVK
_chem_comp.name                                 "(3~{R})-2-[(5-chloranylpyridin-2-yl)methyl]-3-(4-chlorophenyl)-4-fluoranyl-3-[[1-(hydroxymethyl)cyclopropyl]methoxy]-6-(2-oxidanylpropan-2-yl)isoindol-1-one"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C28 H27 Cl2 F N2 O4"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-01-14
_chem_comp.pdbx_modified_date                   2021-04-02
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       545.429
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    TVK
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7BJ6
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBE
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
TVK  C1   C1   C   0  1  N  N  N  -18.504  -10.853  16.217  -2.512   1.018  -3.029  C1    TVK   1  
TVK  C3   C2   C   0  1  N  N  N  -18.660   -9.350  16.021  -1.663  -0.247  -2.882  C3    TVK   2  
TVK  C6   C3   C   0  1  N  N  R  -21.449   -9.154  13.589   0.558   0.559  -0.004  C6    TVK   3  
TVK  C8   C4   C   0  1  N  N  N  -23.086  -10.606  14.920  -1.266   1.408   1.656  C8    TVK   4  
TVK  C10  C5   C   0  1  Y  N  N  -24.903  -11.025  13.215  -3.337   0.244   2.425  C10   TVK   5  
TVK  C11  C6   C   0  1  Y  N  N  -25.626  -11.901  12.432  -4.628  -0.209   2.196  C11   TVK   6  
TVK  C12  C7   C   0  1  Y  N  N  -25.406  -13.256  12.564  -5.197   0.022   0.951  C12   TVK   7  
TVK  C14  C8   C   0  1  Y  N  N  -24.416  -13.699  13.441  -4.463   0.691  -0.011  C14   TVK   8  
TVK  C16  C9   C   0  1  N  N  N  -23.431   -8.198  14.427  -0.058  -0.778   1.745  C16   TVK   9  
TVK  O17  O1   O   0  1  N  N  N  -24.486   -8.092  15.032  -0.610  -1.197   2.744  O17   TVK  10  
TVK  C19  C10  C   0  1  Y  N  N  -23.080   -5.863  13.385   1.567  -2.758   1.163  C19   TVK  11  
TVK  C21  C11  C   0  1  Y  N  N  -21.068   -5.581  12.125   2.916  -2.400  -0.786  C21   TVK  12  
TVK  C22  C12  C   0  1  Y  N  N  -20.713   -6.869  12.418   2.334  -1.154  -0.971  C22   TVK  13  
TVK  C24  C13  C   0  1  Y  N  N  -21.526   -7.695  13.205   1.370  -0.709  -0.092  C24   TVK  14  
TVK  C25  C14  C   0  1  N  N  N  -22.698   -3.625  12.230   3.169  -4.547   0.472  C25   TVK  15  
TVK  C26  C15  C   0  1  N  N  N  -21.800   -2.519  12.782   3.576  -5.119  -0.887  C26   TVK  16  
TVK  C27  C16  C   0  1  N  N  N  -22.815   -3.491  10.712   4.409  -4.404   1.357  C27   TVK  17  
TVK  C31  C17  C   0  1  Y  N  N  -22.301  -10.203   9.991   2.710   3.229   1.573  C31   TVK  18  
TVK  C35  C18  C   0  1  Y  N  N  -20.860  -11.202  12.140   1.906   2.442  -0.953  C35   TVK  19  
TVK  C36  C19  C   0  1  N  N  N  -17.999   -8.414  16.981  -2.121  -1.497  -3.636  C36   TVK  20  
TVK  C37  C20  C   0  1  N  N  N  -17.481   -8.551  15.585  -0.889  -0.724  -4.113  C37   TVK  21  
TVK  O2   O2   O   0  1  N  N  N  -19.574  -11.422  16.953  -1.919   2.079  -2.278  O2    TVK  22  
TVK  C4   C21  C   0  1  N  N  N  -20.040   -8.970  15.504  -1.008  -0.447  -1.514  C4    TVK  23  
TVK  O5   O3   O   0  1  N  N  N  -20.264   -9.610  14.217  -0.242   0.711  -1.179  O5    TVK  24  
TVK  N7   N1   N   0  1  N  N  N  -22.685   -9.336  14.322  -0.301   0.415   1.176  N7    TVK  25  
TVK  C9   C22  C   0  1  Y  N  N  -23.934  -11.527  14.073  -2.666   0.906   1.414  C9    TVK  26  
TVK  CL1  CL1  CL  0  0  N  N  N  -26.330  -14.359  11.565  -6.809  -0.523   0.607  CL13  TVK  27  
TVK  N15  N2   N   0  1  Y  N  N  -23.699  -12.849  14.205  -3.238   1.108   0.243  N15   TVK  28  
TVK  C18  C23  C   0  1  Y  N  N  -22.711   -7.163  13.674   0.976  -1.506   0.985  C18   TVK  29  
TVK  C20  C24  C   0  1  Y  N  N  -22.261   -5.040  12.603   2.531  -3.196   0.278  C20   TVK  30  
TVK  F23  F1   F   0  1  N  N  N  -19.549   -7.361  11.956   2.712  -0.379  -2.010  F23   TVK  31  
TVK  O28  O4   O   0  1  N  N  N  -24.048   -3.519  12.726   2.235  -5.429   1.099  O28   TVK  32  
TVK  C29  C25  C   0  1  Y  N  N  -21.533   -9.987  12.289   1.469   1.748   0.160  C29   TVK  33  
TVK  C30  C26  C   0  1  Y  N  N  -22.231   -9.492  11.183   1.866   2.145   1.423  C30   TVK  34  
TVK  C32  C27  C   0  1  Y  N  N  -21.639  -11.396   9.885   3.153   3.921   0.459  C32   TVK  35  
TVK  CL2  CL2  CL  0  0  N  N  N  -21.659  -12.251   8.345   4.214   5.282   0.647  CL33  TVK  36  
TVK  C34  C28  C   0  1  Y  N  N  -20.917  -11.913  10.945   2.750   3.526  -0.804  C34   TVK  37  
TVK  H38  H1   H   0  1  N  N  N  -18.461  -11.334  15.229  -2.564   1.301  -4.080  H38   TVK  38  
TVK  H39  H2   H   0  1  N  N  N  -17.565  -11.042  16.758  -3.518   0.825  -2.654  H39   TVK  39  
TVK  H43  H3   H   0  1  N  N  N  -23.655  -10.378  15.833  -1.118   1.573   2.723  H43   TVK  40  
TVK  H44  H4   H   0  1  N  N  N  -22.169  -11.151  15.186  -1.119   2.346   1.119  H44   TVK  41  
TVK  H45  H5   H   0  1  N  N  N  -25.088   -9.962  13.161  -2.865   0.086   3.383  H45   TVK  42  
TVK  H46  H6   H   0  1  N  N  N  -26.354  -11.531  11.725  -5.176  -0.729   2.967  H46   TVK  43  
TVK  H47  H7   H   0  1  N  N  N  -24.217  -14.758  13.511  -4.898   0.875  -0.983  H47   TVK  44  
TVK  H48  H8   H   0  1  N  N  N  -24.013   -5.477  13.768   1.271  -3.384   1.992  H48   TVK  45  
TVK  H49  H9   H   0  1  N  N  N  -20.415   -4.974  11.515   3.671  -2.749  -1.474  H49   TVK  46  
TVK  H50  H10  H   0  1  N  N  N  -21.720   -2.622  13.874   4.288  -4.446  -1.366  H50   TVK  47  
TVK  H52  H11  H   0  1  N  N  N  -20.799   -2.601  12.332   4.037  -6.096  -0.747  H52   TVK  48  
TVK  H51  H12  H   0  1  N  N  N  -22.233   -1.538  12.537   2.693  -5.221  -1.518  H51   TVK  49  
TVK  H53  H13  H   0  1  N  N  N  -23.130   -2.468  10.457   4.119  -3.997   2.326  H53   TVK  50  
TVK  H55  H14  H   0  1  N  N  N  -21.839   -3.700  10.249   4.870  -5.382   1.497  H55   TVK  51  
TVK  H54  H15  H   0  1  N  N  N  -23.560   -4.208  10.337   5.121  -3.732   0.879  H54   TVK  52  
TVK  H58  H16  H   0  1  N  N  N  -22.871   -9.819   9.158   3.020   3.539   2.560  H58   TVK  53  
TVK  H60  H17  H   0  1  N  N  N  -20.286  -11.596  12.966   1.596   2.131  -1.940  H60   TVK  54  
TVK  H61  H18  H   0  1  N  N  N  -17.417   -8.812  17.826  -1.956  -2.462  -3.158  H61   TVK  55  
TVK  H62  H19  H   0  1  N  N  N  -18.511   -7.491  17.290  -3.028  -1.418  -4.236  H62   TVK  56  
TVK  H64  H20  H   0  1  N  N  N  -16.517   -9.048  15.403  -0.985  -0.138  -5.027  H64   TVK  57  
TVK  H63  H21  H   0  1  N  N  N  -17.610   -7.727  14.867   0.086  -1.181  -3.948  H63   TVK  58  
TVK  H42  H22  H   0  1  N  N  N  -19.432  -12.356  17.048  -2.406   2.914  -2.325  H42   TVK  59  
TVK  H40  H23  H   0  1  N  N  N  -20.101   -7.878  15.387  -1.781  -0.602  -0.761  H40   TVK  60  
TVK  H41  H24  H   0  1  N  N  N  -20.806   -9.305  16.219  -0.354  -1.318  -1.549  H41   TVK  61  
TVK  H56  H25  H   0  1  N  N  N  -24.045   -3.595  13.673   1.423  -5.566   0.593  H56   TVK  62  
TVK  H57  H26  H   0  1  N  N  N  -22.727   -8.535  11.257   1.516   1.609   2.292  H57   TVK  63  
TVK  H59  H27  H   0  1  N  N  N  -20.403  -12.858  10.847   3.096   4.065  -1.674  H59   TVK  64  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
TVK  CL2  C32  SING  N  N   1  
TVK  C32  C31  DOUB  Y  N   2  
TVK  C32  C34  SING  Y  N   3  
TVK  C31  C30  SING  Y  N   4  
TVK  C27  C25  SING  N  N   5  
TVK  C34  C35  DOUB  Y  N   6  
TVK  C30  C29  DOUB  Y  N   7  
TVK  CL1  C12  SING  N  N   8  
TVK  F23  C22  SING  N  N   9  
TVK  C21  C22  DOUB  Y  N  10  
TVK  C21  C20  SING  Y  N  11  
TVK  C35  C29  SING  Y  N  12  
TVK  C25  C20  SING  N  N  13  
TVK  C25  O28  SING  N  N  14  
TVK  C25  C26  SING  N  N  15  
TVK  C29  C6   SING  N  N  16  
TVK  C22  C24  SING  Y  N  17  
TVK  C11  C12  DOUB  Y  N  18  
TVK  C11  C10  SING  Y  N  19  
TVK  C12  C14  SING  Y  N  20  
TVK  C20  C19  DOUB  Y  N  21  
TVK  C24  C6   SING  N  N  22  
TVK  C24  C18  DOUB  Y  N  23  
TVK  C10  C9   DOUB  Y  N  24  
TVK  C19  C18  SING  Y  N  25  
TVK  C14  N15  DOUB  Y  N  26  
TVK  C6   O5   SING  N  N  27  
TVK  C6   N7   SING  N  N  28  
TVK  C18  C16  SING  N  N  29  
TVK  C9   N15  SING  Y  N  30  
TVK  C9   C8   SING  N  N  31  
TVK  O5   C4   SING  N  N  32  
TVK  N7   C16  SING  N  N  33  
TVK  N7   C8   SING  N  N  34  
TVK  C16  O17  DOUB  N  N  35  
TVK  C4   C3   SING  N  N  36  
TVK  C37  C3   SING  N  N  37  
TVK  C37  C36  SING  N  N  38  
TVK  C3   C1   SING  N  N  39  
TVK  C3   C36  SING  N  N  40  
TVK  C1   O2   SING  N  N  41  
TVK  C1   H38  SING  N  N  42  
TVK  C1   H39  SING  N  N  43  
TVK  C8   H43  SING  N  N  44  
TVK  C8   H44  SING  N  N  45  
TVK  C10  H45  SING  N  N  46  
TVK  C11  H46  SING  N  N  47  
TVK  C14  H47  SING  N  N  48  
TVK  C19  H48  SING  N  N  49  
TVK  C21  H49  SING  N  N  50  
TVK  C26  H50  SING  N  N  51  
TVK  C26  H52  SING  N  N  52  
TVK  C26  H51  SING  N  N  53  
TVK  C27  H53  SING  N  N  54  
TVK  C27  H55  SING  N  N  55  
TVK  C27  H54  SING  N  N  56  
TVK  C31  H58  SING  N  N  57  
TVK  C35  H60  SING  N  N  58  
TVK  C36  H61  SING  N  N  59  
TVK  C36  H62  SING  N  N  60  
TVK  C37  H64  SING  N  N  61  
TVK  C37  H63  SING  N  N  62  
TVK  O2   H42  SING  N  N  63  
TVK  C4   H40  SING  N  N  64  
TVK  C4   H41  SING  N  N  65  
TVK  O28  H56  SING  N  N  66  
TVK  C30  H57  SING  N  N  67  
TVK  C34  H59  SING  N  N  68  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
TVK  InChI             InChI                 1.03   "InChI=1S/C28H27Cl2FN2O4/c1-26(2,36)18-11-22-24(23(31)12-18)28(17-3-5-19(29)6-4-17,37-16-27(15-34)9-10-27)33(25(22)35)14-21-8-7-20(30)13-32-21/h3-8,11-13,34,36H,9-10,14-16H2,1-2H3/t28-/m1/s1"  
TVK  InChIKey          InChI                 1.03   WLOCTJJGJPSXJZ-MUUNZHRXSA-N  
TVK  SMILES_CANONICAL  CACTVS                3.385  "CC(C)(O)c1cc(F)c2c(c1)C(=O)N(Cc3ccc(Cl)cn3)[C@@]2(OCC4(CO)CC4)c5ccc(Cl)cc5"  
TVK  SMILES            CACTVS                3.385  "CC(C)(O)c1cc(F)c2c(c1)C(=O)N(Cc3ccc(Cl)cn3)[C]2(OCC4(CO)CC4)c5ccc(Cl)cc5"  
TVK  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CC(C)(c1cc2c(c(c1)F)[C@@](N(C2=O)Cc3ccc(cn3)Cl)(c4ccc(cc4)Cl)OCC5(CC5)CO)O"  
TVK  SMILES            "OpenEye OEToolkits"  2.0.7  "CC(C)(c1cc2c(c(c1)F)C(N(C2=O)Cc3ccc(cn3)Cl)(c4ccc(cc4)Cl)OCC5(CC5)CO)O"  
#
_pdbx_chem_comp_identifier.comp_id          TVK
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "(3~{R})-2-[(5-chloranylpyridin-2-yl)methyl]-3-(4-chlorophenyl)-4-fluoranyl-3-[[1-(hydroxymethyl)cyclopropyl]methoxy]-6-(2-oxidanylpropan-2-yl)isoindol-1-one"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
TVK  "Create component"  2021-01-14  PDBE  
TVK  "Initial release"   2021-04-07  RCSB  
##
