data_S1K
# 
_chem_comp.id                                    S1K 
_chem_comp.name                                  "2-(5-(benzyloxy)-1-hydroxy-1,3-dihydrobenzo[c][1,2]oxaborol-3-yl)acetic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C16 H15 B O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "2-[(3S)-1-oxidanyl-5-phenylmethoxy-3H-2,1-benzoxaborol-3-yl]ethanoic acid" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2020-11-05 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        298.098 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     S1K 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7AUB 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
S1K C12 C1  C 0 1 Y N N N N N 6.625  -3.238 -14.553 -4.906 -0.563 1.189  C12 S1K 1  
S1K C13 C2  C 0 1 Y N N N N N 6.885  1.292  -18.089 -0.593 1.865  0.311  C13 S1K 2  
S1K C14 C3  C 0 1 Y N N N N N 6.500  2.466  -18.719 0.673  2.405  0.377  C14 S1K 3  
S1K C15 C4  C 0 1 Y N N N N N 5.291  3.104  -18.426 1.779  1.614  0.075  C15 S1K 4  
S1K O   O1  O 0 1 N N N N N N -0.025 3.936  -17.703 5.179  -1.738 -0.873 O   S1K 5  
S1K C   C5  C 0 1 N N N N N N 0.848  3.648  -16.897 4.512  -2.155 0.045  C   S1K 6  
S1K O5  O2  O 0 1 N N N N N N 0.916  4.102  -15.625 4.931  -3.217 0.750  O5  S1K 7  
S1K C1  C6  C 0 1 N N N N N N 1.992  2.755  -17.289 3.211  -1.482 0.397  C1  S1K 8  
S1K C2  C7  C 0 1 N N S N N N 3.337  3.422  -17.073 2.970  -0.308 -0.554 C2  S1K 9  
S1K O4  O3  O 0 1 N N N N N N 3.489  4.592  -17.859 3.964  0.692  -0.338 O4  S1K 10 
S1K B   B1  B 0 1 N N N N N N 4.711  4.652  -18.744 3.323  1.899  0.050  B   S1K 11 
S1K C3  C8  C 0 1 Y N N N N N 4.497  2.535  -17.432 1.608  0.278  -0.293 C3  S1K 12 
S1K C5  C9  C 0 1 Y N N N N N 6.049  0.729  -17.116 -0.763 0.535  -0.056 C5  S1K 13 
S1K C4  C10 C 0 1 Y N N N N N 4.847  1.345  -16.796 0.340  -0.255 -0.358 C4  S1K 14 
S1K O1  O4  O 0 1 N N N N N N 6.481  -0.421 -16.482 -2.011 0.004  -0.114 O1  S1K 15 
S1K C6  C11 C 0 1 N N N N N N 5.707  -1.059 -15.440 -3.100 0.870  0.214  C6  S1K 16 
S1K C7  C12 C 0 1 Y N N N N N 6.652  -1.845 -14.562 -4.397 0.112  0.095  C7  S1K 17 
S1K C11 C13 C 0 1 Y N N N N N 7.549  -3.960 -13.809 -6.096 -1.258 1.079  C11 S1K 18 
S1K C10 C14 C 0 1 Y N N N N N 8.510  -3.299 -13.059 -6.780 -1.273 -0.122 C10 S1K 19 
S1K C9  C15 C 0 1 Y N N N N N 8.538  -1.915 -13.049 -6.274 -0.593 -1.214 C9  S1K 20 
S1K C8  C16 C 0 1 Y N N N N N 7.615  -1.193 -13.792 -5.077 0.092  -1.108 C8  S1K 21 
S1K H1  H1  H 0 1 N N N N N N 5.878  -3.762 -15.131 -4.372 -0.551 2.127  H1  S1K 22 
S1K H2  H2  H 0 1 N N N N N N 7.820  0.817  -18.346 -1.453 2.474  0.549  H2  S1K 23 
S1K H3  H3  H 0 1 N N N N N N 7.155  2.901  -19.459 0.808  3.438  0.661  H3  S1K 24 
S1K H4  H4  H 0 1 N N N N N N 0.181  4.679  -15.455 5.773  -3.615 0.486  H4  S1K 25 
S1K H5  H5  H 0 1 N N N N N N 1.891  2.496  -18.353 2.395  -2.199 0.304  H5  S1K 26 
S1K H6  H6  H 0 1 N N N N N N 1.950  1.838  -16.683 3.258  -1.116 1.423  H6  S1K 27 
S1K H7  H7  H 0 1 N N N N N N 3.421  3.684  -16.008 3.024  -0.658 -1.585 H7  S1K 28 
S1K H9  H9  H 0 1 N N N N N N 4.189  0.906  -16.061 0.203  -1.288 -0.643 H9  S1K 29 
S1K H10 H10 H 0 1 N N N N N N 5.190  -0.296 -14.840 -2.982 1.230  1.236  H10 S1K 30 
S1K H11 H11 H 0 1 N N N N N N 4.966  -1.737 -15.889 -3.110 1.717  -0.471 H11 S1K 31 
S1K H12 H12 H 0 1 N N N N N N 7.519  -5.040 -13.815 -6.491 -1.789 1.932  H12 S1K 32 
S1K H13 H13 H 0 1 N N N N N N 9.233  -3.861 -12.486 -7.709 -1.817 -0.208 H13 S1K 33 
S1K H14 H14 H 0 1 N N N N N N 9.280  -1.396 -12.461 -6.807 -0.605 -2.152 H14 S1K 34 
S1K H15 H15 H 0 1 N N N N N N 7.643  -0.114 -13.774 -4.679 0.619  -1.962 H15 S1K 35 
S1K O2  O5  O 0 1 N N N N N N 4.367  4.896  -20.103 3.959  3.131  0.357  O2  S1K 36 
S1K H8  H8  H 0 1 N N N N N N 3.423  4.973  -20.182 4.923  3.106  0.283  H8  S1K 37 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
S1K B   C15 SING N N 1  
S1K B   O4  SING N N 2  
S1K C14 C15 DOUB Y N 3  
S1K C14 C13 SING Y N 4  
S1K C15 C3  SING Y N 5  
S1K C13 C5  DOUB Y N 6  
S1K O4  C2  SING N N 7  
S1K O   C   DOUB N N 8  
S1K C3  C2  SING N N 9  
S1K C3  C4  DOUB Y N 10 
S1K C1  C2  SING N N 11 
S1K C1  C   SING N N 12 
S1K C5  C4  SING Y N 13 
S1K C5  O1  SING N N 14 
S1K C   O5  SING N N 15 
S1K O1  C6  SING N N 16 
S1K C6  C7  SING N N 17 
S1K C7  C12 DOUB Y N 18 
S1K C7  C8  SING Y N 19 
S1K C12 C11 SING Y N 20 
S1K C11 C10 DOUB Y N 21 
S1K C8  C9  DOUB Y N 22 
S1K C10 C9  SING Y N 23 
S1K C12 H1  SING N N 24 
S1K C13 H2  SING N N 25 
S1K C14 H3  SING N N 26 
S1K O5  H4  SING N N 27 
S1K C1  H5  SING N N 28 
S1K C1  H6  SING N N 29 
S1K C2  H7  SING N N 30 
S1K C4  H9  SING N N 31 
S1K C6  H10 SING N N 32 
S1K C6  H11 SING N N 33 
S1K C11 H12 SING N N 34 
S1K C10 H13 SING N N 35 
S1K C9  H14 SING N N 36 
S1K C8  H15 SING N N 37 
S1K B   O2  SING N N 38 
S1K O2  H8  SING N N 39 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
S1K InChI            InChI                1.03  "InChI=1S/C16H15BO5/c18-16(19)9-15-13-8-12(6-7-14(13)17(20)22-15)21-10-11-4-2-1-3-5-11/h1-8,15,20H,9-10H2,(H,18,19)/t15-/m0/s1" 
S1K InChIKey         InChI                1.03  HVZSXJPAWAMXTG-HNNXBMFYSA-N                                                                                                     
S1K SMILES_CANONICAL CACTVS               3.385 "OB1O[C@@H](CC(O)=O)c2cc(OCc3ccccc3)ccc12"                                                                                      
S1K SMILES           CACTVS               3.385 "OB1O[CH](CC(O)=O)c2cc(OCc3ccccc3)ccc12"                                                                                        
S1K SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "B1(c2ccc(cc2[C@@H](O1)CC(=O)O)OCc3ccccc3)O"                                                                                    
S1K SMILES           "OpenEye OEToolkits" 2.0.7 "B1(c2ccc(cc2C(O1)CC(=O)O)OCc3ccccc3)O"                                                                                         
# 
_pdbx_chem_comp_identifier.comp_id           S1K 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "2-[(3~{S})-1-oxidanyl-5-phenylmethoxy-3~{H}-2,1-benzoxaborol-3-yl]ethanoic acid" 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      S1K 
_pdbx_chem_comp_synonyms.name         "2-[(3S)-1-oxidanyl-5-phenylmethoxy-3H-2,1-benzoxaborol-3-yl]ethanoic acid" 
_pdbx_chem_comp_synonyms.provenance   PDB 
_pdbx_chem_comp_synonyms.type         ? 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
S1K "Create component" 2020-11-05 PDBE 
S1K "Initial release"  2021-08-11 RCSB 
S1K "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            S1K 
_pdbx_chem_comp_pcm.modified_residue_id                SER 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               B 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   OG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
