data_RQK
#

_chem_comp.id                                   RQK
_chem_comp.name                                 "(2~{R})-2-oxidanyl-2-[(6~{S},9~{S},12~{S},15~{S},17~{S})-6,10,12,17-tetramethyl-3-methylidene-7-oxidanyl-2,5,8,11,14-pentakis(oxidanylidene)-13-oxa-1,4,7,10-tetrazabicyclo[13.3.0]octadecan-9-yl]ethanamide"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C20 H29 N5 O9"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-10-20
_chem_comp.pdbx_modified_date                   2021-02-26
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       483.472
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    RQK
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7ALR
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBE
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
RQK  C12   C1   C  0  1  N  N  N  19.877   6.159  14.838   0.168  -2.690   0.561  C12   RQK   1  
RQK  C15   C2   C  0  1  N  N  N  17.523   5.456  15.064  -1.827  -3.981  -0.123  C15   RQK   2  
RQK  C20   C3   C  0  1  N  N  S  18.328   9.674  14.976  -3.141   0.636   0.432  C20   RQK   3  
RQK  N24   N1   N  0  1  N  N  N  15.849  10.822  15.347  -5.515   2.294  -0.507  N24   RQK   4  
RQK  C30   C4   C  0  1  N  N  S  22.244   9.126  14.814   0.265   2.266   0.160  C30   RQK   5  
RQK  C01   C5   C  0  1  N  N  N  25.825   8.611   9.700   6.724   0.874  -1.454  C01   RQK   6  
RQK  C02   C6   C  0  1  N  N  S  25.424   7.627  10.637   5.917   0.423  -0.238  C02   RQK   7  
RQK  C03   C7   C  0  1  N  N  N  25.455   8.091  12.145   5.132   1.597   0.376  C03   RQK   8  
RQK  C04   C8   C  0  1  N  N  S  24.694   7.201  12.749   3.796   0.986   0.826  C04   RQK   9  
RQK  C06   C9   C  0  1  N  N  N  23.879   7.316  10.450   4.847  -0.597  -0.658  C06   RQK  10  
RQK  C07   C10  C  0  1  N  N  N  22.217   6.357  11.924   2.509  -1.014   0.199  C07   RQK  11  
RQK  C09   C11  C  0  1  N  N  N  21.845   5.957  13.345   2.115  -2.072  -0.736  C09   RQK  12  
RQK  C10   C12  C  0  1  N  N  N  22.651   5.299  14.234   2.926  -2.467  -1.725  C10   RQK  13  
RQK  C14   C13  C  0  1  N  N  S  18.484   6.661  14.941  -1.342  -2.733   0.614  C14   RQK  14  
RQK  C18   C14  C  0  1  N  N  N  17.986   8.878  13.742  -2.379  -0.592   0.840  C18   RQK  15  
RQK  C21   C15  C  0  1  N  N  R  18.272  11.155  14.825  -3.984   0.376  -0.820  C21   RQK  16  
RQK  C23   C16  C  0  1  N  N  N  16.801  11.587  14.661  -5.360   0.961  -0.629  C23   RQK  17  
RQK  C27   C17  C  0  1  N  N  N  20.080   9.445  16.842  -2.685   2.955  -0.547  C27   RQK  18  
RQK  C28   C18  C  0  1  N  N  N  20.797   9.296  14.387  -0.997   1.735   0.772  C28   RQK  19  
RQK  C31   C19  C  0  1  N  N  N  22.735  10.506  15.184   0.296   2.089  -1.357  C31   RQK  20  
RQK  C33   C20  C  0  1  N  N  N  24.080   7.865  13.962   2.656   1.910   0.447  C33   RQK  21  
RQK  N05   N2   N  0  1  N  N  N  23.516   6.906  11.639   3.642  -0.299   0.117  N05   RQK  22  
RQK  N11   N3   N  0  1  N  N  N  20.474   6.401  13.612   0.842  -2.655  -0.591  N11   RQK  23  
RQK  N16   N4   N  0  1  N  N  N  18.082   7.407  13.767  -1.852  -1.492  -0.045  N16   RQK  24  
RQK  N26   N5   N  0  1  N  N  N  19.746   9.443  15.415  -2.229   1.777   0.210  N26   RQK  25  
RQK  O08   O1   O  0  1  N  N  N  21.387   6.259  11.058   1.748  -0.725   1.112  O08   RQK  26  
RQK  O13   O2   O  0  1  N  N  N  20.457   5.669  15.720   0.761  -2.740   1.631  O13   RQK  27  
RQK  O17   O3   O  0  1  N  N  N  17.805   6.704  12.582  -1.744  -1.308  -1.448  O17   RQK  28  
RQK  O19   O4   O  0  1  N  N  N  17.612   9.440  12.772  -2.220  -0.787   2.043  O19   RQK  29  
RQK  O22   O5   O  0  1  N  N  N  18.892  11.682  13.688  -4.091  -1.032  -1.039  O22   RQK  30  
RQK  O25   O6   O  0  1  N  N  N  16.422  12.534  13.988  -6.328   0.231  -0.585  O25   RQK  31  
RQK  O29   O7   O  0  1  N  N  N  20.536   9.321  13.252  -0.901   1.270   1.905  O29   RQK  32  
RQK  O32   O8   O  0  1  N  N  N  22.968   8.681  13.706   1.397   1.529   0.710  O32   RQK  33  
RQK  O34   O9   O  0  1  N  N  N  24.544   7.775  15.068   2.891   2.975  -0.074  O34   RQK  34  
RQK  H152  H1   H  0  0  N  N  N  17.794   4.859  15.947  -1.416  -4.870   0.356  H152  RQK  35  
RQK  H153  H2   H  0  0  N  N  N  16.490   5.820  15.170  -2.916  -4.023  -0.091  H153  RQK  36  
RQK  H151  H3   H  0  0  N  N  N  17.601   4.832  14.162  -1.496  -3.942  -1.161  H151  RQK  37  
RQK  H201  H4   H  0  0  N  N  N  17.652   9.372  15.789  -3.851   0.879   1.245  H201  RQK  38  
RQK  H241  H5   H  0  0  N  N  N  14.879  11.055  15.281  -4.741   2.877  -0.542  H241  RQK  39  
RQK  H242  H6   H  0  0  N  N  N  16.140  10.043  15.903  -6.400   2.670  -0.383  H242  RQK  40  
RQK  H301  H7   H  0  0  N  N  N  22.319   8.441  15.672   0.403   3.311   0.420  H301  RQK  41  
RQK  H012  H8   H  0  0  N  N  N  26.896   8.827   9.830   7.432   1.647  -1.155  H012  RQK  42  
RQK  H011  H9   H  0  0  N  N  N  25.647   8.240   8.680   7.268   0.023  -1.865  H011  RQK  43  
RQK  H013  H10  H  0  0  N  N  N  25.244   9.531   9.863   6.049   1.273  -2.211  H013  RQK  44  
RQK  H021  H11  H  0  0  N  N  N  26.000   6.697  10.526   6.569  -0.018   0.505  H021  RQK  45  
RQK  H031  H12  H  0  0  N  N  N  26.480   8.069  12.544   5.666   2.020   1.222  H031  RQK  46  
RQK  H032  H13  H  0  0  N  N  N  25.040   9.104  12.255   4.972   2.358  -0.392  H032  RQK  47  
RQK  H041  H14  H  0  0  N  N  N  25.199   6.261  13.014   3.806   0.824   1.900  H041  RQK  48  
RQK  H061  H15  H  0  0  N  N  N  23.326   8.221  10.158   4.637  -0.442  -1.724  H061  RQK  49  
RQK  H062  H16  H  0  0  N  N  N  23.722   6.531   9.696   5.200  -1.619  -0.490  H062  RQK  50  
RQK  H102  H17  H  0  0  N  N  N  22.287   5.068  15.224   3.894  -2.004  -1.848  H102  RQK  51  
RQK  H101  H18  H  0  0  N  N  N  23.651   5.011  13.945   2.612  -3.250  -2.401  H101  RQK  52  
RQK  H141  H19  H  0  0  N  N  N  18.383   7.287  15.840  -1.655  -2.757   1.652  H141  RQK  53  
RQK  H211  H20  H  0  0  N  N  N  18.674  11.626  15.734  -3.508   0.843  -1.682  H211  RQK  54  
RQK  H272  H21  H  0  0  N  N  N  19.161   9.565  17.434  -3.127   3.679   0.138  H272  RQK  55  
RQK  H273  H22  H  0  0  N  N  N  20.565   8.494  17.106  -1.836   3.410  -1.058  H273  RQK  56  
RQK  H271  H23  H  0  0  N  N  N  20.766  10.278  17.057  -3.429   2.649  -1.282  H271  RQK  57  
RQK  H311  H24  H  0  0  N  N  N  22.175  10.873  16.057  -0.504   2.675  -1.808  H311  RQK  58  
RQK  H312  H25  H  0  0  N  N  N  23.806  10.460  15.429   1.257   2.428  -1.743  H312  RQK  59  
RQK  H313  H26  H  0  0  N  N  N  22.582  11.189  14.336   0.157   1.036  -1.603  H313  RQK  60  
RQK  H111  H27  H  0  0  N  N  N  19.964   6.884  12.901   0.430  -3.031  -1.413  H111  RQK  61  
RQK  H171  H28  H  0  0  N  N  N  17.554   7.317  11.901  -1.173  -0.570  -1.704  H171  RQK  62  
RQK  H221  H29  H  0  0  N  N  N  18.287  12.258  13.235  -4.864  -1.437  -0.623  H221  RQK  63  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
RQK  C01  C02   SING  N  N   1  
RQK  C06  C02   SING  N  N   2  
RQK  C06  N05   SING  N  N   3  
RQK  C02  C03   SING  N  N   4  
RQK  O08  C07   DOUB  N  N   5  
RQK  N05  C07   SING  N  N   6  
RQK  N05  C04   SING  N  N   7  
RQK  C07  C09   SING  N  N   8  
RQK  C03  C04   SING  N  N   9  
RQK  O17  N16   SING  N  N  10  
RQK  C04  C33   SING  N  N  11  
RQK  O19  C18   DOUB  N  N  12  
RQK  O29  C28   DOUB  N  N  13  
RQK  C09  N11   SING  N  N  14  
RQK  C09  C10   DOUB  N  N  15  
RQK  N11  C12   SING  N  N  16  
RQK  O22  C21   SING  N  N  17  
RQK  O32  C33   SING  N  N  18  
RQK  O32  C30   SING  N  N  19  
RQK  C18  N16   SING  N  N  20  
RQK  C18  C20   SING  N  N  21  
RQK  N16  C14   SING  N  N  22  
RQK  C33  O34   DOUB  N  N  23  
RQK  O25  C23   DOUB  N  N  24  
RQK  C28  C30   SING  N  N  25  
RQK  C28  N26   SING  N  N  26  
RQK  C23  C21   SING  N  N  27  
RQK  C23  N24   SING  N  N  28  
RQK  C30  C31   SING  N  N  29  
RQK  C21  C20   SING  N  N  30  
RQK  C12  C14   SING  N  N  31  
RQK  C12  O13   DOUB  N  N  32  
RQK  C14  C15   SING  N  N  33  
RQK  C20  N26   SING  N  N  34  
RQK  N26  C27   SING  N  N  35  
RQK  C15  H152  SING  N  N  36  
RQK  C15  H153  SING  N  N  37  
RQK  C15  H151  SING  N  N  38  
RQK  C20  H201  SING  N  N  39  
RQK  N24  H241  SING  N  N  40  
RQK  N24  H242  SING  N  N  41  
RQK  C30  H301  SING  N  N  42  
RQK  C01  H012  SING  N  N  43  
RQK  C01  H011  SING  N  N  44  
RQK  C01  H013  SING  N  N  45  
RQK  C02  H021  SING  N  N  46  
RQK  C03  H031  SING  N  N  47  
RQK  C03  H032  SING  N  N  48  
RQK  C04  H041  SING  N  N  49  
RQK  C06  H061  SING  N  N  50  
RQK  C06  H062  SING  N  N  51  
RQK  C10  H102  SING  N  N  52  
RQK  C10  H101  SING  N  N  53  
RQK  C14  H141  SING  N  N  54  
RQK  C21  H211  SING  N  N  55  
RQK  C27  H272  SING  N  N  56  
RQK  C27  H273  SING  N  N  57  
RQK  C27  H271  SING  N  N  58  
RQK  C31  H311  SING  N  N  59  
RQK  C31  H312  SING  N  N  60  
RQK  C31  H313  SING  N  N  61  
RQK  N11  H111  SING  N  N  62  
RQK  O17  H171  SING  N  N  63  
RQK  O22  H221  SING  N  N  64  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
RQK  InChI             InChI                 1.03   "InChI=1S/C20H29N5O9/c1-8-6-12-20(32)34-11(4)18(30)23(5)13(14(26)15(21)27)19(31)25(33)10(3)16(28)22-9(2)17(29)24(12)7-8/h8,10-14,26,33H,2,6-7H2,1,3-5H3,(H2,21,27)(H,22,28)/t8-,10-,11-,12-,13-,14+/m0/s1"  
RQK  InChIKey          InChI                 1.03   OPGOHWRVFNUNKK-GBIYJBALSA-N  
RQK  SMILES_CANONICAL  CACTVS                3.385  "C[C@H]1C[C@@H]2N(C1)C(=O)C(=C)NC(=O)[C@H](C)N(O)C(=O)[C@H]([C@@H](O)C(N)=O)N(C)C(=O)[C@H](C)OC2=O"  
RQK  SMILES            CACTVS                3.385  "C[CH]1C[CH]2N(C1)C(=O)C(=C)NC(=O)[CH](C)N(O)C(=O)[CH]([CH](O)C(N)=O)N(C)C(=O)[CH](C)OC2=O"  
RQK  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "C[C@H]1C[C@H]2C(=O)O[C@H](C(=O)N([C@H](C(=O)N([C@H](C(=O)NC(=C)C(=O)N2C1)C)O)[C@H](C(=O)N)O)C)C"  
RQK  SMILES            "OpenEye OEToolkits"  2.0.7  "CC1CC2C(=O)OC(C(=O)N(C(C(=O)N(C(C(=O)NC(=C)C(=O)N2C1)C)O)C(C(=O)N)O)C)C"  
#
_pdbx_chem_comp_identifier.comp_id          RQK
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "(2~{R})-2-oxidanyl-2-[(6~{S},9~{S},12~{S},15~{S},17~{S})-6,10,12,17-tetramethyl-3-methylidene-7-oxidanyl-2,5,8,11,14-pentakis(oxidanylidene)-13-oxa-1,4,7,10-tetrazabicyclo[13.3.0]octadecan-9-yl]ethanamide"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
RQK  "Create component"  2020-10-20  PDBE  
RQK  "Initial release"   2021-03-03  RCSB  
##
