data_R6K
#

_chem_comp.id                                   R6K
_chem_comp.name                                 "2-azanyl-~{N}-[(1~{S},2~{S})-2-[[4-[4-[(4-methylpiperazin-1-yl)methyl]phenyl]phenyl]methoxy]cyclopentyl]-5-(1-methylpyrazol-4-yl)pyridine-3-carboxamide"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C34 H41 N7 O2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-09-07
_chem_comp.pdbx_modified_date                   2020-10-30
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       579.735
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    R6K
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7AAZ
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBE
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
R6K  C1   C1   C  0  1  N  N  N   -9.743  22.755   7.703  10.424   1.911   2.040  C1   R6K   1  
R6K  C2   C2   C  0  1  N  N  N  -10.224  23.822   6.713  10.009   2.183   0.592  C2   R6K   2  
R6K  C3   C3   C  0  1  N  N  N   -9.471  25.439   5.039   8.287   1.763  -1.058  C3   R6K   3  
R6K  N6   N1   N  0  1  Y  N  N    5.175  27.705  -8.538  -8.231   3.856  -1.414  N6   R6K   4  
R6K  C7   C4   C  0  1  Y  N  N   -5.989  26.764   2.830   4.334   0.216  -1.564  C7   R6K   5  
R6K  C8   C5   C  0  1  Y  N  N   -6.878  27.682   3.390   4.522   1.514  -1.095  C8   R6K   6  
R6K  C9   C6   C  0  1  Y  N  N   -7.992  27.258   4.096   5.800   2.008  -0.933  C9   R6K   7  
R6K  C10  C7   C  0  1  Y  N  N   -4.793  27.207   2.072   2.962  -0.319  -1.746  C10  R6K   8  
R6K  C11  C8   C  0  1  Y  N  N   -4.138  26.341   1.207   2.774  -1.618  -2.215  C11  R6K   9  
R6K  C12  C9   C  0  1  Y  N  N   -3.026  26.744   0.499   1.495  -2.112  -2.377  C12  R6K  10  
R6K  C13  C10  C  0  1  Y  N  N   -2.525  28.026   0.625   0.402  -1.321  -2.074  C13  R6K  11  
R6K  C14  C11  C  0  1  N  N  N   -1.316  28.433  -0.158  -0.992  -1.867  -2.251  C14  R6K  12  
R6K  C15  C12  C  0  1  N  N  S    0.878  27.721  -0.775  -2.730  -3.053  -1.104  C15  R6K  13  
R6K  C16  C13  C  0  1  N  N  N    2.131  27.190  -0.081  -2.662  -4.523  -1.555  C16  R6K  14  
R6K  C19  C14  C  0  1  N  N  S    0.685  26.818  -2.026  -3.370  -3.052   0.300  C19  R6K  15  
R6K  C20  C15  C  0  1  N  N  N    0.505  28.552  -3.713  -4.581  -1.458   1.689  C20  R6K  16  
R6K  C21  C16  C  0  1  Y  N  N    1.111  29.332  -4.843  -5.476  -0.297   1.847  C21  R6K  17  
R6K  C22  C17  C  0  1  Y  N  N    2.070  28.766  -5.693  -5.899   0.431   0.732  C22  R6K  18  
R6K  C24  C18  C  0  1  Y  N  N    2.167  30.832  -6.888  -7.138   1.844   2.233  C24  R6K  19  
R6K  C27  C19  C  0  1  Y  N  N    4.652  29.743  -8.311  -6.898   2.116  -1.571  C27  R6K  20  
R6K  C30  C20  C  0  1  Y  N  N   -3.169  28.900   1.485   0.582  -0.031  -1.607  C30  R6K  21  
R6K  C31  C21  C  0  1  Y  N  N   -4.287  28.499   2.198   1.857   0.473  -1.442  C31  R6K  22  
R6K  C32  C22  C  0  1  N  N  N   -8.292  25.116   7.148   8.926   0.020   0.498  C32  R6K  23  
R6K  C33  C23  C  0  1  N  N  N   -7.766  24.074   8.081   9.340  -0.251   1.946  C33  R6K  24  
R6K  O1   O1   O  0  1  N  N  N   -0.593  28.882  -3.259  -4.133  -2.019   2.671  O1   R6K  25  
R6K  C25  C24  C  0  1  Y  N  N    0.717  30.699  -5.086  -5.923   0.092   3.122  C25  R6K  26  
R6K  N4   N2   N  0  1  N  N  N   -0.193  31.295  -4.309  -5.519  -0.620   4.237  N4   R6K  27  
R6K  N3   N3   N  0  1  Y  N  N    1.254  31.413  -6.100  -6.727   1.135   3.265  N3   R6K  28  
R6K  C23  C25  C  0  1  Y  N  N    2.608  29.525  -6.732  -6.745   1.520   0.936  C23  R6K  29  
R6K  C26  C26  C  0  1  Y  N  N    3.732  29.014  -7.547  -7.217   2.330  -0.216  C26  R6K  30  
R6K  C29  C27  C  0  1  Y  N  N    4.109  27.703  -7.724  -8.038   3.418  -0.153  C29  R6K  31  
R6K  C28  C28  C  0  1  N  N  N    5.933  26.557  -9.020  -9.050   5.005  -1.808  C28  R6K  32  
R6K  N5   N4   N  0  1  Y  N  N    5.530  28.955  -8.914  -7.509   3.027  -2.281  N5   R6K  33  
R6K  N2   N5   N  0  1  N  N  N    1.178  27.503  -3.215  -4.259  -1.899   0.457  N2   R6K  34  
R6K  C18  C29  C  0  1  N  N  N    1.422  25.505  -1.723  -4.180  -4.372   0.348  C18  R6K  35  
R6K  C17  C30  C  0  1  N  N  N    2.223  25.725  -0.480  -3.263  -5.363  -0.410  C17  R6K  36  
R6K  O    O2   O  0  1  N  N  N   -0.214  27.592   0.133  -1.414  -2.499  -1.041  O    R6K  37  
R6K  C6   C31  C  0  1  Y  N  N   -6.264  25.410   3.009   5.439  -0.577  -1.868  C6   R6K  38  
R6K  C5   C32  C  0  1  Y  N  N   -7.379  24.992   3.716   6.713  -0.072  -1.703  C5   R6K  39  
R6K  C4   C33  C  0  1  Y  N  N   -8.259  25.910   4.270   6.894   1.217  -1.236  C4   R6K  40  
R6K  N1   N6   N  0  1  N  N  N   -9.075  24.478   6.085   8.759   1.467   0.301  N1   R6K  41  
R6K  N    N7   N  0  1  N  N  N   -8.860  23.340   8.721  10.591   0.465   2.237  N    R6K  42  
R6K  C    C34  C  0  1  N  N  N   -8.336  22.301   9.604  11.062   0.169   3.596  C    R6K  43  
R6K  H1   H1   H  0  1  N  N  N  -10.616  22.306   8.199  11.366   2.418   2.250  H1   R6K  44  
R6K  H2   H2   H  0  1  N  N  N   -9.193  21.977   7.154   9.653   2.284   2.715  H2   R6K  45  
R6K  H3   H3   H  0  1  N  N  N  -10.823  24.572   7.249   9.857   3.253   0.452  H3   R6K  46  
R6K  H4   H4   H  0  1  N  N  N  -10.841  23.346   5.936  10.793   1.835  -0.082  H4   R6K  47  
R6K  H5   H5   H  0  1  N  N  N   -9.961  26.305   5.509   8.955   1.298  -1.784  H5   R6K  48  
R6K  H6   H6   H  0  1  N  N  N  -10.173  24.952   4.346   8.278   2.842  -1.213  H6   R6K  49  
R6K  H7   H7   H  0  1  N  N  N   -6.695  28.740   3.271   3.669   2.132  -0.858  H7   R6K  50  
R6K  H8   H8   H  0  1  N  N  N   -8.664  27.991   4.518   5.947   3.014  -0.569  H8   R6K  51  
R6K  H9   H9   H  0  1  N  N  N   -4.506  25.333   1.087   3.627  -2.236  -2.452  H9   R6K  52  
R6K  H10  H10  H  0  1  N  N  N   -2.538  26.046  -0.165   1.349  -3.118  -2.741  H10  R6K  53  
R6K  H11  H11  H  0  1  N  N  N   -1.054  29.470   0.098  -1.673  -1.051  -2.492  H11  R6K  54  
R6K  H12  H12  H  0  1  N  N  N   -1.544  28.367  -1.232  -0.996  -2.595  -3.063  H12  R6K  55  
R6K  H13  H13  H  0  1  N  N  N    1.029  28.765  -1.087  -3.344  -2.478  -1.796  H13  R6K  56  
R6K  H14  H14  H  0  1  N  N  N    3.022  27.738  -0.422  -3.244  -4.661  -2.466  H14  R6K  57  
R6K  H15  H15  H  0  1  N  N  N    2.037  27.286   1.011  -1.625  -4.813  -1.727  H15  R6K  58  
R6K  H16  H16  H  0  1  N  N  N   -0.388  26.603  -2.139  -2.600  -3.049   1.071  H16  R6K  59  
R6K  H17  H17  H  0  1  N  N  N    2.391  27.746  -5.544  -5.578   0.157  -0.263  H17  R6K  60  
R6K  H18  H18  H  0  1  N  N  N    2.586  31.416  -7.694  -7.793   2.687   2.395  H18  R6K  61  
R6K  H19  H19  H  0  1  N  N  N    4.646  30.819  -8.398  -6.265   1.330  -1.956  H19  R6K  62  
R6K  H20  H20  H  0  1  N  N  N   -2.795  29.906   1.601  -0.275   0.582  -1.373  H20  R6K  63  
R6K  H21  H21  H  0  1  N  N  N   -4.774  29.198   2.862   1.997   1.479  -1.074  H21  R6K  64  
R6K  H22  H22  H  0  1  N  N  N   -7.450  25.666   6.702   9.697  -0.352  -0.177  H22  R6K  65  
R6K  H23  H23  H  0  1  N  N  N   -8.933  25.815   7.705   7.984  -0.486   0.288  H23  R6K  66  
R6K  H24  H24  H  0  1  N  N  N   -7.142  23.367   7.515   8.557   0.097   2.619  H24  R6K  67  
R6K  H25  H25  H  0  1  N  N  N   -7.157  24.561   8.857   9.493  -1.321   2.086  H25  R6K  68  
R6K  H26  H26  H  0  1  N  N  N   -0.338  32.233  -4.624  -4.868  -1.334   4.147  H26  R6K  69  
R6K  H27  H27  H  0  1  N  N  N   -1.055  30.790  -4.358  -5.887  -0.406   5.109  H27  R6K  70  
R6K  H28  H28  H  0  1  N  N  N    3.636  26.835  -7.289  -8.458   3.849   0.743  H28  R6K  71  
R6K  H29  H29  H  0  1  N  N  N    6.749  26.903  -9.672  -8.434   5.904  -1.818  H29  R6K  72  
R6K  H30  H30  H  0  1  N  N  N    6.355  26.010  -8.164  -9.460   4.835  -2.804  H30  R6K  73  
R6K  H31  H31  H  0  1  N  N  N    5.267  25.891  -9.588  -9.866   5.132  -1.096  H31  R6K  74  
R6K  H32  H32  H  0  1  N  N  N    2.018  27.191  -3.660  -4.617  -1.452  -0.326  H32  R6K  75  
R6K  H33  H33  H  0  1  N  N  N    0.697  24.693  -1.565  -4.330  -4.695   1.378  H33  R6K  76  
R6K  H34  H34  H  0  1  N  N  N    2.088  25.245  -2.559  -5.135  -4.258  -0.165  H34  R6K  77  
R6K  H35  H35  H  0  1  N  N  N    1.825  25.097   0.331  -3.847  -6.192  -0.812  H35  R6K  78  
R6K  H36  H36  H  0  1  N  N  N    3.274  25.460  -0.667  -2.476  -5.733   0.246  H36  R6K  79  
R6K  H37  H37  H  0  1  N  N  N   -5.596  24.673   2.589   5.299  -1.584  -2.232  H37  R6K  80  
R6K  H38  H38  H  0  1  N  N  N   -7.566  23.935   3.838   7.570  -0.685  -1.938  H38  R6K  81  
R6K  H41  H41  H  0  1  N  N  N   -7.678  22.758  10.358  10.337   0.539   4.321  H41  R6K  82  
R6K  H42  H42  H  0  1  N  N  N   -9.171  21.791  10.106  11.177  -0.909   3.714  H42  R6K  83  
R6K  H43  H43  H  0  1  N  N  N   -7.764  21.571   9.012  12.023   0.657   3.761  H43  R6K  84  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
R6K  C28  N6   SING  N  N   1  
R6K  N5   N6   SING  Y  N   2  
R6K  N5   C27  DOUB  Y  N   3  
R6K  N6   C29  SING  Y  N   4  
R6K  C27  C26  SING  Y  N   5  
R6K  C29  C26  DOUB  Y  N   6  
R6K  C26  C23  SING  N  N   7  
R6K  C24  C23  DOUB  Y  N   8  
R6K  C24  N3   SING  Y  N   9  
R6K  C23  C22  SING  Y  N  10  
R6K  N3   C25  DOUB  Y  N  11  
R6K  C22  C21  DOUB  Y  N  12  
R6K  C25  C21  SING  Y  N  13  
R6K  C25  N4   SING  N  N  14  
R6K  C21  C20  SING  N  N  15  
R6K  C20  O1   DOUB  N  N  16  
R6K  C20  N2   SING  N  N  17  
R6K  N2   C19  SING  N  N  18  
R6K  C19  C18  SING  N  N  19  
R6K  C19  C15  SING  N  N  20  
R6K  C18  C17  SING  N  N  21  
R6K  C15  C16  SING  N  N  22  
R6K  C15  O    SING  N  N  23  
R6K  C17  C16  SING  N  N  24  
R6K  C14  O    SING  N  N  25  
R6K  C14  C13  SING  N  N  26  
R6K  C12  C13  DOUB  Y  N  27  
R6K  C12  C11  SING  Y  N  28  
R6K  C13  C30  SING  Y  N  29  
R6K  C11  C10  DOUB  Y  N  30  
R6K  C30  C31  DOUB  Y  N  31  
R6K  C10  C31  SING  Y  N  32  
R6K  C10  C7   SING  N  N  33  
R6K  C7   C6   DOUB  Y  N  34  
R6K  C7   C8   SING  Y  N  35  
R6K  C6   C5   SING  Y  N  36  
R6K  C8   C9   DOUB  Y  N  37  
R6K  C5   C4   DOUB  Y  N  38  
R6K  C9   C4   SING  Y  N  39  
R6K  C4   C3   SING  N  N  40  
R6K  C3   N1   SING  N  N  41  
R6K  N1   C2   SING  N  N  42  
R6K  N1   C32  SING  N  N  43  
R6K  C2   C1   SING  N  N  44  
R6K  C32  C33  SING  N  N  45  
R6K  C1   N    SING  N  N  46  
R6K  C33  N    SING  N  N  47  
R6K  N    C    SING  N  N  48  
R6K  C1   H1   SING  N  N  49  
R6K  C1   H2   SING  N  N  50  
R6K  C2   H3   SING  N  N  51  
R6K  C2   H4   SING  N  N  52  
R6K  C3   H5   SING  N  N  53  
R6K  C3   H6   SING  N  N  54  
R6K  C8   H7   SING  N  N  55  
R6K  C9   H8   SING  N  N  56  
R6K  C11  H9   SING  N  N  57  
R6K  C12  H10  SING  N  N  58  
R6K  C14  H11  SING  N  N  59  
R6K  C14  H12  SING  N  N  60  
R6K  C15  H13  SING  N  N  61  
R6K  C16  H14  SING  N  N  62  
R6K  C16  H15  SING  N  N  63  
R6K  C19  H16  SING  N  N  64  
R6K  C22  H17  SING  N  N  65  
R6K  C24  H18  SING  N  N  66  
R6K  C27  H19  SING  N  N  67  
R6K  C30  H20  SING  N  N  68  
R6K  C31  H21  SING  N  N  69  
R6K  C32  H22  SING  N  N  70  
R6K  C32  H23  SING  N  N  71  
R6K  C33  H24  SING  N  N  72  
R6K  C33  H25  SING  N  N  73  
R6K  N4   H26  SING  N  N  74  
R6K  N4   H27  SING  N  N  75  
R6K  C29  H28  SING  N  N  76  
R6K  C28  H29  SING  N  N  77  
R6K  C28  H30  SING  N  N  78  
R6K  C28  H31  SING  N  N  79  
R6K  N2   H32  SING  N  N  80  
R6K  C18  H33  SING  N  N  81  
R6K  C18  H34  SING  N  N  82  
R6K  C17  H35  SING  N  N  83  
R6K  C17  H36  SING  N  N  84  
R6K  C6   H37  SING  N  N  85  
R6K  C5   H38  SING  N  N  86  
R6K  C    H41  SING  N  N  87  
R6K  C    H42  SING  N  N  88  
R6K  C    H43  SING  N  N  89  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
R6K  InChI             InChI                 1.03   "InChI=1S/C34H41N7O2/c1-39-14-16-41(17-15-39)21-24-6-10-26(11-7-24)27-12-8-25(9-13-27)23-43-32-5-3-4-31(32)38-34(42)30-18-28(19-36-33(30)35)29-20-37-40(2)22-29/h6-13,18-20,22,31-32H,3-5,14-17,21,23H2,1-2H3,(H2,35,36)(H,38,42)/t31-,32-/m0/s1"  
R6K  InChIKey          InChI                 1.03   GTVWQFJFCAUNFY-ACHIHNKUSA-N  
R6K  SMILES_CANONICAL  CACTVS                3.385  "CN1CCN(CC1)Cc2ccc(cc2)c3ccc(CO[C@H]4CCC[C@@H]4NC(=O)c5cc(cnc5N)c6cnn(C)c6)cc3"  
R6K  SMILES            CACTVS                3.385  "CN1CCN(CC1)Cc2ccc(cc2)c3ccc(CO[CH]4CCC[CH]4NC(=O)c5cc(cnc5N)c6cnn(C)c6)cc3"  
R6K  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "Cn1cc(cn1)c2cc(c(nc2)N)C(=O)N[C@H]3CCC[C@@H]3OCc4ccc(cc4)c5ccc(cc5)CN6CCN(CC6)C"  
R6K  SMILES            "OpenEye OEToolkits"  2.0.7  "Cn1cc(cn1)c2cc(c(nc2)N)C(=O)NC3CCCC3OCc4ccc(cc4)c5ccc(cc5)CN6CCN(CC6)C"  
#
_pdbx_chem_comp_identifier.comp_id          R6K
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "2-azanyl-~{N}-[(1~{S},2~{S})-2-[[4-[4-[(4-methylpiperazin-1-yl)methyl]phenyl]phenyl]methoxy]cyclopentyl]-5-(1-methylpyrazol-4-yl)pyridine-3-carboxamide"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
R6K  "Create component"  2020-09-07  PDBE  
R6K  "Initial release"   2020-11-04  RCSB  
##
