data_QCK
#

_chem_comp.id                                   QCK
_chem_comp.name                                 "(4-methyltriazole)-Thymidine-5'-monophosphate"
_chem_comp.type                                 "DNA linking"
_chem_comp.pdbx_type                            ATOMN
_chem_comp.formula                              "C13 H18 N5 O8 P"
_chem_comp.mon_nstd_parent_comp_id              DT
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-06-05
_chem_comp.pdbx_modified_date                   2021-01-22
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       403.284
_chem_comp.one_letter_code                      T
_chem_comp.three_letter_code                    QCK
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6Z8W
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBE
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
QCK  N1     N1   N  0  1  N  N  N  61.394  -41.134  31.688  -1.023   1.180  -0.071  N1     QCK   1  
QCK  C4     C1   C  0  1  N  N  N  61.195  -40.185  34.261  -3.285   0.884   1.405  C4     QCK   2  
QCK  C5     C2   C  0  1  N  N  N  62.456  -40.445  33.718  -2.061   1.208   2.038  C5     QCK   3  
QCK  C6     C3   C  0  1  N  N  N  62.539  -40.933  32.407  -0.949   1.351   1.285  C6     QCK   4  
QCK  C7     C4   C  0  1  N  N  N  63.688  -40.180  34.546  -1.999   1.393   3.532  C7     QCK   5  
QCK  C8     C5   C  0  1  Y  N  N  58.973  -42.580  35.082  -5.390  -1.904   0.203  C8     QCK   6  
QCK  C1     C6   C  0  1  N  N  N  58.620  -40.165  34.152  -4.576   0.386  -0.600  C1     QCK   7  
QCK  C2     C7   C  0  1  N  N  N  60.090  -40.893  32.255  -2.192   0.871  -0.660  C2     QCK   8  
QCK  C9     C8   C  0  1  Y  N  N  58.184  -41.412  34.898  -4.723  -1.112  -0.669  C9     QCK   9  
QCK  O2     O1   O  0  1  N  N  N  58.998  -41.083  31.666  -2.234   0.723  -1.866  O2     QCK  10  
QCK  "C1'"  C9   C  0  1  N  N  R  61.466  -41.638  30.302   0.182   1.340  -0.889  "C1'"  QCK  11  
QCK  "C2'"  C10  C  0  1  N  N  N  62.348  -40.847  29.342   0.729   2.780  -0.764  "C2'"  QCK  12  
QCK  "C3'"  C11  C  0  1  N  N  S  63.144  -41.906  28.634   2.263   2.601  -0.778  "C3'"  QCK  13  
QCK  "O3'"  O2   O  0  1  N  N  N  62.847  -41.867  27.229   2.837   3.279  -1.898  "O3'"  QCK  14  
QCK  "C4'"  C12  C  0  1  N  N  R  62.687  -43.255  29.199   2.462   1.075  -0.909  "C4'"  QCK  15  
QCK  "C5'"  C13  C  0  1  N  N  N  63.857  -44.203  29.445   3.663   0.621  -0.076  "C5'"  QCK  16  
QCK  "O5'"  O3   O  0  1  N  N  N  64.724  -43.659  30.395   3.901  -0.770  -0.302  "O5'"  QCK  17  
QCK  P      P1   P  0  1  N  N  N  65.977  -44.503  30.952   5.091  -1.584   0.414  P      QCK  18  
QCK  OP2    O4   O  0  1  N  N  N  66.363  -45.724  29.977   6.510  -1.008  -0.084  OP2    QCK  19  
QCK  OP1    O5   O  0  1  N  N  N  65.754  -44.985  32.471   4.982  -1.428   1.881  OP1    QCK  20  
QCK  "O4'"  O6   O  0  1  N  N  N  62.123  -42.890  30.443   1.244   0.498  -0.391  "O4'"  QCK  21  
QCK  O4     O7   O  0  1  N  N  N  61.082  -39.780  35.425  -4.301   0.750   2.063  O4     QCK  22  
QCK  N3     N2   N  0  1  N  N  N  59.975  -40.414  33.560  -3.315   0.723   0.066  N3     QCK  23  
QCK  N10    N3   N  0  1  Y  N  N  56.971  -41.604  35.509  -4.214  -1.936  -1.614  N10    QCK  24  
QCK  N11    N4   N  0  1  Y  N  N  56.981  -42.912  36.065  -4.557  -3.142  -1.324  N11    QCK  25  
QCK  N12    N5   N  0  1  Y  N  N  58.263  -43.480  35.784  -5.259  -3.157  -0.246  N12    QCK  26  
QCK  H1     H1   H  0  1  N  N  N  63.502  -41.149  31.967  -0.007   1.598   1.750  H1     QCK  27  
QCK  H2     H2   H  0  1  N  N  N  63.391  -39.804  35.536  -2.991   1.238   3.958  H2     QCK  28  
QCK  H3     H3   H  0  1  N  N  N  64.258  -41.113  34.665  -1.303   0.671   3.959  H3     QCK  29  
QCK  H4     H4   H  0  1  N  N  N  64.314  -39.430  34.041  -1.660   2.403   3.760  H4     QCK  30  
QCK  H5     H5   H  0  1  N  N  N  59.980  -42.721  34.717  -5.920  -1.587   1.089  H5     QCK  31  
QCK  H6     H6   H  0  1  N  N  N  58.670  -39.315  34.848  -4.575   0.798  -1.609  H6     QCK  32  
QCK  H7     H7   H  0  1  N  N  N  57.900  -39.941  33.351  -5.408   0.808  -0.036  H7     QCK  33  
QCK  H8     H8   H  0  1  N  N  N  60.458  -41.756  29.878  -0.033   1.103  -1.931  H8     QCK  34  
QCK  H9     H9   H  0  1  N  N  N  63.009  -40.161  29.892   0.407   3.385  -1.612  H9     QCK  35  
QCK  H10    H10  H  0  1  N  N  N  61.736  -40.274  28.629   0.403   3.232   0.172  H10    QCK  36  
QCK  H11    H11  H  0  1  N  N  N  64.219  -41.766  28.820   2.698   2.964   0.153  H11    QCK  37  
QCK  H12    H12  H  0  1  N  N  N  63.127  -41.034  26.869   2.740   4.241  -1.867  H12    QCK  38  
QCK  H13    H13  H  0  1  N  N  N  61.949  -43.721  28.529   2.600   0.799  -1.954  H13    QCK  39  
QCK  H14    H14  H  0  1  N  N  N  63.474  -45.167  29.812   4.544   1.192  -0.368  H14    QCK  40  
QCK  H15    H15  H  0  1  N  N  N  64.402  -44.360  28.503   3.456   0.787   0.981  H15    QCK  41  
QCK  H16    H16  H  0  1  N  N  N  66.393  -46.532  30.477   6.650  -1.079  -1.038  H16    QCK  42  
QCK  H18    H18  H  0  1  N  N  N  56.219  -40.946  35.555  -3.684  -1.664  -2.379  H18    QCK  43  
QCK  OP3    OP3  O  0  1  N  Y  N  67.175  -43.442  30.930   4.981  -3.144   0.031  OP3    QCK  44  
QCK  H17    H17  H  0  1  N  N  N  67.504  -43.317  31.812   5.668  -3.696   0.428  H17    QCK  45  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
QCK  "O3'"  "C3'"  SING  N  N   1  
QCK  "C3'"  "C4'"  SING  N  N   2  
QCK  "C3'"  "C2'"  SING  N  N   3  
QCK  "C4'"  "C5'"  SING  N  N   4  
QCK  "C4'"  "O4'"  SING  N  N   5  
QCK  "C2'"  "C1'"  SING  N  N   6  
QCK  "C5'"  "O5'"  SING  N  N   7  
QCK  OP2    P      SING  N  N   8  
QCK  "C1'"  "O4'"  SING  N  N   9  
QCK  "C1'"  N1     SING  N  N  10  
QCK  "O5'"  P      SING  N  N  11  
QCK  P      OP1    DOUB  N  N  12  
QCK  O2     C2     DOUB  N  N  13  
QCK  N1     C2     SING  N  N  14  
QCK  N1     C6     SING  N  N  15  
QCK  C2     N3     SING  N  N  16  
QCK  C6     C5     DOUB  N  N  17  
QCK  N3     C1     SING  N  N  18  
QCK  N3     C4     SING  N  N  19  
QCK  C5     C4     SING  N  N  20  
QCK  C5     C7     SING  N  N  21  
QCK  C1     C9     SING  N  N  22  
QCK  C4     O4     DOUB  N  N  23  
QCK  C9     C8     DOUB  Y  N  24  
QCK  C9     N10    SING  Y  N  25  
QCK  C8     N12    SING  Y  N  26  
QCK  N10    N11    SING  Y  N  27  
QCK  N12    N11    DOUB  Y  N  28  
QCK  C6     H1     SING  N  N  29  
QCK  C7     H2     SING  N  N  30  
QCK  C7     H3     SING  N  N  31  
QCK  C7     H4     SING  N  N  32  
QCK  C8     H5     SING  N  N  33  
QCK  C1     H6     SING  N  N  34  
QCK  C1     H7     SING  N  N  35  
QCK  "C1'"  H8     SING  N  N  36  
QCK  "C2'"  H9     SING  N  N  37  
QCK  "C2'"  H10    SING  N  N  38  
QCK  "C3'"  H11    SING  N  N  39  
QCK  "O3'"  H12    SING  N  N  40  
QCK  "C4'"  H13    SING  N  N  41  
QCK  "C5'"  H14    SING  N  N  42  
QCK  "C5'"  H15    SING  N  N  43  
QCK  OP2    H16    SING  N  N  44  
QCK  N10    H18    SING  N  N  45  
QCK  P      OP3    SING  N  N  46  
QCK  OP3    H17    SING  N  N  47  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
QCK  InChI             InChI                 1.03   "InChI=1S/C13H18N5O8P/c1-7-4-17(11-2-9(19)10(26-11)6-25-27(22,23)24)13(21)18(12(7)20)5-8-3-14-16-15-8/h3-4,9-11,19H,2,5-6H2,1H3,(H,14,15,16)(H2,22,23,24)/t9-,10+,11+/m0/s1"  
QCK  InChIKey          InChI                 1.03   CSMLWNXTBCGKPQ-HBNTYKKESA-N  
QCK  SMILES_CANONICAL  CACTVS                3.385  "CC1=CN([C@H]2C[C@H](O)[C@@H](CO[P](O)(O)=O)O2)C(=O)N(Cc3[nH]nnc3)C1=O"  
QCK  SMILES            CACTVS                3.385  "CC1=CN([CH]2C[CH](O)[CH](CO[P](O)(O)=O)O2)C(=O)N(Cc3[nH]nnc3)C1=O"  
QCK  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CC1=CN(C(=O)N(C1=O)Cc2cnn[nH]2)[C@H]3C[C@@H]([C@H](O3)COP(=O)(O)O)O"  
QCK  SMILES            "OpenEye OEToolkits"  2.0.7  "CC1=CN(C(=O)N(C1=O)Cc2cnn[nH]2)C3CC(C(O3)COP(=O)(O)O)O"  
#
_pdbx_chem_comp_identifier.comp_id          QCK
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "[(2~{R},3~{S},5~{R})-5-[5-methyl-2,4-bis(oxidanylidene)-3-(1~{H}-1,2,3-triazol-5-ylmethyl)pyrimidin-1-yl]-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphate"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
QCK  "Create component"    2020-06-05  PDBE  
QCK  "Other modification"  2020-07-24  PDBE  
QCK  "Initial release"     2021-01-27  RCSB  
##
