data_OMK
# 
_chem_comp.id                                    OMK 
_chem_comp.name                                  "(2S)-2-[2-(4-chlorophenyl)-5,6-difluoro-1H-benzimidazol-1-yl]-2-cyclohexyl-N-(2-methylphenyl)ethanamide" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C28 H26 Cl F2 N3 O" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2010-09-08 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        493.975 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     OMK 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3OMK 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
OMK N1   N1   N  0 1 Y N N 23.056 17.930 3.701 -1.125 0.705  0.209  N1   OMK 1  
OMK C2   C2   C  0 1 Y N N 22.216 17.175 2.839 -0.580 1.952  0.058  C2   OMK 2  
OMK N3   N3   N  0 1 Y N N 22.889 16.209 2.195 -1.491 2.783  -0.384 N3   OMK 3  
OMK C4   C4   C  0 1 Y N N 24.307 17.320 3.606 -2.452 0.791  -0.167 C4   OMK 4  
OMK C5   C5   C  0 1 Y N N 24.189 16.247 2.663 -2.667 2.128  -0.544 C5   OMK 5  
OMK C6   C6   C  0 1 N N N 23.515 20.303 4.163 0.643  -0.873 -0.313 C6   OMK 6  
OMK C7   C7   C  0 1 N N S 22.662 19.038 4.535 -0.430 -0.497 0.677  C7   OMK 7  
OMK C8   C8   C  0 1 Y N N 25.512 17.586 4.238 -3.495 -0.123 -0.229 C8   OMK 8  
OMK N9   N9   N  0 1 N N N 23.827 20.433 2.836 1.723  -1.567 0.096  N9   OMK 9  
OMK C10  C10  C  0 1 Y N N 25.305 15.421 2.355 -3.936 2.526  -0.979 C10  OMK 10 
OMK C11  C11  C  0 1 Y N N 26.610 16.799 3.914 -4.741 0.284  -0.660 C11  OMK 11 
OMK C12  C12  C  0 1 Y N N 20.833 17.553 2.631 0.825  2.307  0.350  C12  OMK 12 
OMK C13  C13  C  0 1 Y N N 26.514 15.761 2.969 -4.960 1.607  -1.033 C13  OMK 13 
OMK C14  C14  C  0 1 Y N N 24.489 21.496 2.218 2.690  -1.968 -0.833 C14  OMK 14 
OMK O15  O15  O  0 1 N N N 23.889 21.122 4.997 0.533  -0.552 -1.477 O15  OMK 15 
OMK C16  C16  C  0 1 Y N N 23.782 22.709 2.045 3.687  -2.859 -0.459 C16  OMK 16 
OMK C17  C17  C  0 1 N N N 22.786 18.697 6.044 -1.431 -1.647 0.807  C17  OMK 17 
OMK C18  C18  C  0 1 Y N N 20.561 18.722 1.909 1.379  3.471  -0.184 C18  OMK 18 
OMK C19  C19  C  0 1 Y N N 19.795 16.827 3.225 1.601  1.482  1.166  C19  OMK 19 
OMK F20  F20  F  0 1 N N N 27.818 17.030 4.478 -5.755 -0.607 -0.720 F20  OMK 20 
OMK F21  F21  F  0 1 N N N 27.643 15.053 2.804 -6.185 1.991  -1.453 F21  OMK 21 
OMK C22  C22  C  0 1 Y N N 18.208 18.410 2.352 3.457  2.973  0.898  C22  OMK 22 
OMK C23  C23  C  0 1 Y N N 18.484 17.269 3.095 2.911  1.819  1.435  C23  OMK 23 
OMK C24  C24  C  0 1 Y N N 19.235 19.157 1.769 2.691  3.798  0.092  C24  OMK 24 
OMK CL25 CL25 CL 0 0 N N N 16.592 18.916 2.211 5.107  3.389  1.241  CL25 OMK 25 
OMK C26  C26  C  0 1 Y N N 25.840 21.389 1.791 2.651  -1.479 -2.132 C26  OMK 26 
OMK C27  C27  C  0 1 N N N 22.373 22.820 2.451 3.728  -3.397 0.948  C27  OMK 27 
OMK C28  C28  C  0 1 Y N N 24.385 23.757 1.350 4.640  -3.253 -1.378 C28  OMK 28 
OMK C29  C29  C  0 1 N N N 22.092 19.714 6.945 -0.679 -2.945 1.109  C29  OMK 29 
OMK C30  C30  C  0 1 N N N 22.297 17.281 6.336 -2.408 -1.346 1.945  C30  OMK 30 
OMK C31  C31  C  0 1 Y N N 26.430 22.475 1.145 3.607  -1.877 -3.046 C31  OMK 31 
OMK C32  C32  C  0 1 Y N N 25.708 23.649 0.935 4.602  -2.760 -2.669 C32  OMK 32 
OMK C33  C33  C  0 1 N N N 22.413 16.908 7.817 -3.408 -2.496 2.075  C33  OMK 33 
OMK C34  C34  C  0 1 N N N 22.173 19.312 8.417 -1.680 -4.095 1.239  C34  OMK 34 
OMK C35  C35  C  0 1 N N N 21.643 17.909 8.652 -2.657 -3.795 2.377  C35  OMK 35 
OMK H7   H7   H  0 1 N N N 21.600 19.255 4.349 0.025  -0.299 1.648  H7   OMK 36 
OMK H8   H8   H  0 1 N N N 25.595 18.383 4.962 -3.331 -1.151 0.060  H8   OMK 37 
OMK HN9  HN9  H  0 1 N N N 23.549 19.679 2.241 1.831  -1.789 1.034  HN9  OMK 38 
OMK H10  H10  H  0 1 N N N 25.223 14.578 1.684 -4.113 3.551  -1.270 H10  OMK 39 
OMK H17  H17  H  0 1 N N N 23.859 18.749 6.283 -1.983 -1.755 -0.127 H17  OMK 40 
OMK H18  H18  H  0 1 N N N 21.367 19.285 1.463 0.782  4.116  -0.812 H18  OMK 41 
OMK H19  H19  H  0 1 N N N 20.012 15.927 3.782 1.176  0.583  1.586  H19  OMK 42 
OMK H23  H23  H  0 1 N N N 17.681 16.726 3.571 3.513  1.181  2.067  H23  OMK 43 
OMK H24  H24  H  0 1 N N N 19.010 20.058 1.218 3.120  4.699  -0.320 H24  OMK 44 
OMK H26  H26  H  0 1 N N N 26.400 20.482 1.964 1.875  -0.790 -2.427 H26  OMK 45 
OMK H27  H27  H  0 1 N N N 22.316 23.217 3.475 3.141  -4.314 1.005  H27  OMK 46 
OMK H27A H27A H  0 0 N N N 21.846 23.499 1.765 4.761  -3.610 1.226  H27A OMK 47 
OMK H27B H27B H  0 0 N N N 21.902 21.826 2.416 3.314  -2.657 1.633  H27B OMK 48 
OMK H28  H28  H  0 1 N N N 23.824 24.654 1.134 5.415  -3.946 -1.087 H28  OMK 49 
OMK H29  H29  H  0 1 N N N 22.582 20.691 6.818 0.017  -3.159 0.298  H29  OMK 50 
OMK H29A H29A H  0 0 N N N 21.033 19.779 6.654 -0.127 -2.836 2.042  H29A OMK 51 
OMK H30  H30  H  0 1 N N N 21.239 17.212 6.042 -1.855 -1.238 2.879  H30  OMK 52 
OMK H30A H30A H  0 0 N N N 22.906 16.576 5.752 -2.943 -0.421 1.730  H30A OMK 53 
OMK H31  H31  H  0 1 N N N 27.453 22.406 0.805 3.578  -1.497 -4.057 H31  OMK 54 
OMK H32  H32  H  0 1 N N N 26.182 24.486 0.444 5.349  -3.069 -3.386 H32  OMK 55 
OMK H33  H33  H  0 1 N N N 21.997 15.902 7.975 -4.104 -2.282 2.886  H33  OMK 56 
OMK H33A H33A H  0 0 N N N 23.472 16.919 8.116 -3.960 -2.605 1.142  H33A OMK 57 
OMK H34  H34  H  0 1 N N N 23.226 19.348 8.734 -2.232 -4.203 0.305  H34  OMK 58 
OMK H34A H34A H  0 0 N N N 21.572 20.019 9.008 -1.145 -5.020 1.454  H34A OMK 59 
OMK H35  H35  H  0 1 N N N 20.580 17.872 8.371 -2.105 -3.686 3.311  H35  OMK 60 
OMK H35A H35A H  0 0 N N N 21.755 17.654 9.716 -3.370 -4.614 2.470  H35A OMK 61 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
OMK N1  C2   SING Y N 1  
OMK N1  C4   SING Y N 2  
OMK N1  C7   SING N N 3  
OMK C2  N3   DOUB Y N 4  
OMK C2  C12  SING Y N 5  
OMK N3  C5   SING Y N 6  
OMK C4  C5   DOUB Y N 7  
OMK C4  C8   SING Y N 8  
OMK C5  C10  SING Y N 9  
OMK C6  C7   SING N N 10 
OMK C6  N9   SING N N 11 
OMK C6  O15  DOUB N N 12 
OMK C7  C17  SING N N 13 
OMK C8  C11  DOUB Y N 14 
OMK N9  C14  SING N N 15 
OMK C10 C13  DOUB Y N 16 
OMK C11 C13  SING Y N 17 
OMK C11 F20  SING N N 18 
OMK C12 C18  DOUB Y N 19 
OMK C12 C19  SING Y N 20 
OMK C13 F21  SING N N 21 
OMK C14 C16  DOUB Y N 22 
OMK C14 C26  SING Y N 23 
OMK C16 C27  SING N N 24 
OMK C16 C28  SING Y N 25 
OMK C17 C29  SING N N 26 
OMK C17 C30  SING N N 27 
OMK C18 C24  SING Y N 28 
OMK C19 C23  DOUB Y N 29 
OMK C22 C23  SING Y N 30 
OMK C22 C24  DOUB Y N 31 
OMK C22 CL25 SING N N 32 
OMK C26 C31  DOUB Y N 33 
OMK C28 C32  DOUB Y N 34 
OMK C29 C34  SING N N 35 
OMK C30 C33  SING N N 36 
OMK C31 C32  SING Y N 37 
OMK C33 C35  SING N N 38 
OMK C34 C35  SING N N 39 
OMK C7  H7   SING N N 40 
OMK C8  H8   SING N N 41 
OMK N9  HN9  SING N N 42 
OMK C10 H10  SING N N 43 
OMK C17 H17  SING N N 44 
OMK C18 H18  SING N N 45 
OMK C19 H19  SING N N 46 
OMK C23 H23  SING N N 47 
OMK C24 H24  SING N N 48 
OMK C26 H26  SING N N 49 
OMK C27 H27  SING N N 50 
OMK C27 H27A SING N N 51 
OMK C27 H27B SING N N 52 
OMK C28 H28  SING N N 53 
OMK C29 H29  SING N N 54 
OMK C29 H29A SING N N 55 
OMK C30 H30  SING N N 56 
OMK C30 H30A SING N N 57 
OMK C31 H31  SING N N 58 
OMK C32 H32  SING N N 59 
OMK C33 H33  SING N N 60 
OMK C33 H33A SING N N 61 
OMK C34 H34  SING N N 62 
OMK C34 H34A SING N N 63 
OMK C35 H35  SING N N 64 
OMK C35 H35A SING N N 65 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
OMK SMILES           ACDLabs              12.01 "Clc5ccc(c2nc1cc(F)c(F)cc1n2C(C(=O)Nc3ccccc3C)C4CCCCC4)cc5"                                                                                                                                   
OMK SMILES_CANONICAL CACTVS               3.370 "Cc1ccccc1NC(=O)[C@H](C2CCCCC2)n3c4cc(F)c(F)cc4nc3c5ccc(Cl)cc5"                                                                                                                               
OMK SMILES           CACTVS               3.370 "Cc1ccccc1NC(=O)[CH](C2CCCCC2)n3c4cc(F)c(F)cc4nc3c5ccc(Cl)cc5"                                                                                                                                
OMK SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "Cc1ccccc1NC(=O)[C@H](C2CCCCC2)n3c4cc(c(cc4nc3c5ccc(cc5)Cl)F)F"                                                                                                                               
OMK SMILES           "OpenEye OEToolkits" 1.7.0 "Cc1ccccc1NC(=O)C(C2CCCCC2)n3c4cc(c(cc4nc3c5ccc(cc5)Cl)F)F"                                                                                                                                   
OMK InChI            InChI                1.03  "InChI=1S/C28H26ClF2N3O/c1-17-7-5-6-10-23(17)33-28(35)26(18-8-3-2-4-9-18)34-25-16-22(31)21(30)15-24(25)32-27(34)19-11-13-20(29)14-12-19/h5-7,10-16,18,26H,2-4,8-9H2,1H3,(H,33,35)/t26-/m0/s1" 
OMK InChIKey         InChI                1.03  LUMVOGPLODDMEP-SANMLTNESA-N                                                                                                                                                                   
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
OMK "SYSTEMATIC NAME" ACDLabs              12.01 "(2S)-2-[2-(4-chlorophenyl)-5,6-difluoro-1H-benzimidazol-1-yl]-2-cyclohexyl-N-(2-methylphenyl)ethanamide" 
OMK "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "(2S)-2-[2-(4-chlorophenyl)-5,6-difluoro-benzimidazol-1-yl]-2-cyclohexyl-N-(2-methylphenyl)ethanamide"    
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
OMK "Create component"     2010-09-08 PDBJ 
OMK "Modify aromatic_flag" 2011-06-04 RCSB 
OMK "Modify descriptor"    2011-06-04 RCSB 
# 
