data_O7K
# 
_chem_comp.id                                    O7K 
_chem_comp.name                                  pyrazinoquinolinone 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C25 H23 Cl F2 N4 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "(2R,4aR)-3-acryloyl-11-chloro-9-fluoro-10-(2-fluoro-6-hydroxyphenyl)-2,6-dimethyl-2,3,4,4a-tetrahydro-1H-pyrazino[1',2':4,5]pyrazino[2,3-c]quinolin-5(6H)-one." 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2020-02-18 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        500.925 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     O7K 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6T5B 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
O7K C1  C1  C  0 1 N N N N N N -12.207 -5.152  4.597  -6.832 -0.931 0.675  C1  O7K 1  
O7K C2  C2  C  0 1 N N N N N N -10.729 -5.210  4.214  -5.766 -1.411 -0.275 C2  O7K 2  
O7K C3  C3  C  0 1 N N N N N N -10.985 -7.619  3.629  -4.057 -0.744 1.358  C3  O7K 3  
O7K C7  C4  C  0 1 Y N N N N N -7.550  -11.966 4.793  -0.419 3.143  -0.258 C7  O7K 4  
O7K C8  C5  C  0 1 Y N N N N N -6.613  -11.746 2.699  1.326  1.620  -0.127 C8  O7K 5  
O7K C9  C6  C  0 1 Y N N N N N -7.350  -10.583 2.433  0.419  0.546  0.063  C9  O7K 6  
O7K C10 C7  C  0 1 Y N N N N N -8.226  -10.103 3.446  -0.961 0.827  0.086  C10 O7K 7  
O7K C11 C8  C  0 1 N N N N N N -8.104  -7.654  3.718  -2.406 -0.629 -1.031 C11 O7K 8  
O7K C12 C9  C  0 1 N N R N N N -8.847  -6.395  3.299  -3.402 -1.776 -0.842 C12 O7K 9  
O7K C13 C10 C  0 1 N N N N N N -8.894  -6.179  1.796  -2.690 -2.984 -0.231 C13 O7K 10 
O7K C14 C11 C  0 1 Y N N N N N -7.113  -9.893  1.230  0.904  -0.762 0.220  C14 O7K 11 
O7K C15 C12 C  0 1 Y N N N N N -6.210  -10.343 0.302  2.243  -0.999 0.188  C15 O7K 12 
O7K C16 C13 C  0 1 Y N N N N N -5.464  -11.503 0.532  3.154  0.053  -0.002 C16 O7K 13 
O7K C19 C14 C  0 1 Y N N N N N -4.759  -13.190 -1.192 5.238  -0.530 -1.247 C19 O7K 14 
O7K C20 C15 C  0 1 Y N N N N N -3.830  -13.631 -2.143 6.599  -0.789 -1.271 C20 O7K 15 
O7K C21 C16 C  0 1 Y N N N N N -2.671  -12.912 -2.389 7.331  -0.757 -0.099 C21 O7K 16 
O7K C22 C17 C  0 1 Y N N N N N -2.415  -11.713 -1.753 6.712  -0.467 1.104  C22 O7K 17 
O7K C24 C18 C  0 1 N N N N N N -8.922  -10.806 7.012  -3.255 3.661  -0.711 C24 O7K 18 
O7K CL  CL1 CL 0 0 N N N N N N -6.045  -9.502  -1.216 2.833  -2.621 0.385  CL  O7K 19 
O7K C18 C19 C  0 1 Y N N N N N -4.470  -12.019 -0.485 4.609  -0.231 -0.036 C18 O7K 20 
O7K C23 C20 C  0 1 Y N N N N N -3.313  -11.310 -0.793 5.355  -0.207 1.143  C23 O7K 21 
O7K F1  F1  F  0 1 N N N N N N -3.041  -10.203 -0.075 4.754  0.076  2.319  F1  O7K 22 
O7K O2  O1  O  0 1 N N N N N N -5.937  -13.842 -0.984 4.518  -0.561 -2.399 O2  O7K 23 
O7K C17 C21 C  0 1 Y N N N N N -5.700  -12.178 1.724  2.705  1.353  -0.158 C17 O7K 24 
O7K F   F2  F  0 1 N N N N N N -5.032  -13.318 1.992  3.588  2.360  -0.341 F   O7K 25 
O7K N2  N1  N  0 1 Y N N N N N -6.699  -12.422 3.886  0.866  2.868  -0.274 N2  O7K 26 
O7K C6  C22 C  0 1 Y N N N N N -8.336  -10.830 4.626  -1.371 2.143  -0.082 C6  O7K 27 
O7K N1  N2  N  0 1 N N N N N N -9.115  -10.279 5.662  -2.744 2.443  -0.078 N1  O7K 28 
O7K C5  C23 C  0 1 N N N N N N -9.988  -9.249  5.397  -3.581 1.566  0.533  C5  O7K 29 
O7K O1  O2  O  0 1 N N N N N N -10.531 -8.622  6.308  -4.773 1.783  0.595  O1  O7K 30 
O7K N3  N3  N  0 1 N N N N N N -8.873  -8.824  3.275  -1.905 -0.179 0.278  N3  O7K 31 
O7K C4  C24 C  0 1 N N R N N N -10.179 -8.880  3.949  -2.990 0.318  1.131  C4  O7K 32 
O7K N   N4  N  0 1 N N N N N N -10.204 -6.378  3.878  -4.465 -1.314 0.066  N   O7K 33 
O7K O   O3  O  0 1 N N N N N N -10.024 -4.197  4.204  -6.078 -1.886 -1.347 O   O7K 34 
O7K C   C25 C  0 1 N N N N N N -12.445 -4.279  5.644  -8.210 -1.154 0.051  C   O7K 35 
O7K H1  H1  H  0 1 N N N N N N -12.786 -4.821  3.722  -6.762 -1.487 1.610  H1  O7K 36 
O7K H2  H2  H  0 1 N N N N N N -12.535 -6.159  4.895  -6.690 0.132  0.873  H2  O7K 37 
O7K H3  H3  H  0 1 N N N N N N -11.886 -7.604  4.260  -3.655 -1.533 1.993  H3  O7K 38 
O7K H4  H4  H  0 1 N N N N N N -11.280 -7.646  2.570  -4.922 -0.292 1.845  H4  O7K 39 
O7K H5  H5  H  0 1 N N N N N N -7.639  -12.511 5.721  -0.743 4.166  -0.383 H5  O7K 40 
O7K H6  H6  H  0 1 N N N N N N -7.997  -7.674  4.813  -1.570 -0.973 -1.640 H6  O7K 41 
O7K H7  H7  H  0 1 N N N N N N -7.108  -7.668  3.252  -2.902 0.202  -1.533 H7  O7K 42 
O7K H8  H8  H  0 1 N N N N N N -8.297  -5.544  3.726  -3.834 -2.050 -1.804 H8  O7K 43 
O7K H9  H9  H  0 1 N N N N N N -9.445  -5.253  1.575  -2.270 -2.707 0.736  H9  O7K 44 
O7K H10 H10 H  0 1 N N N N N N -7.869  -6.097  1.405  -3.403 -3.798 -0.099 H10 O7K 45 
O7K H11 H11 H  0 1 N N N N N N -9.402  -7.030  1.319  -1.889 -3.307 -0.896 H11 O7K 46 
O7K H12 H12 H  0 1 N N N N N N -7.658  -8.982  1.032  0.214  -1.579 0.367  H12 O7K 47 
O7K H13 H13 H  0 1 N N N N N N -4.019  -14.542 -2.691 7.089  -1.017 -2.206 H13 O7K 48 
O7K H14 H14 H  0 1 N N N N N N -1.951  -13.299 -3.095 8.392  -0.960 -0.123 H14 O7K 49 
O7K H15 H15 H  0 1 N N N N N N -1.548  -11.118 -1.999 7.291  -0.445 2.015  H15 O7K 50 
O7K H16 H16 H  0 1 N N N N N N -9.593  -10.284 7.710  -3.496 3.455  -1.754 H16 O7K 51 
O7K H17 H17 H  0 1 N N N N N N -9.149  -11.882 7.021  -4.153 3.992  -0.190 H17 O7K 52 
O7K H18 H18 H  0 1 N N N N N N -7.878  -10.649 7.321  -2.497 4.442  -0.660 H18 O7K 53 
O7K H19 H19 H  0 1 N N N N N N -6.430  -13.397 -0.305 4.475  0.288  -2.859 H19 O7K 54 
O7K H20 H20 H  0 1 N N N N N N -10.732 -9.714  3.492  -2.566 0.586  2.099  H20 O7K 55 
O7K H21 H21 H  0 1 N N N N N N -13.519 -4.274  5.881  -8.352 -2.216 -0.147 H21 O7K 56 
O7K H22 H22 H  0 1 N N N N N N -11.877 -4.603  6.528  -8.981 -0.806 0.738  H22 O7K 57 
O7K H23 H23 H  0 1 N N N N N N -12.128 -3.266  5.356  -8.280 -0.598 -0.884 H23 O7K 58 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
O7K C21 C20 DOUB Y N 1  
O7K C21 C22 SING Y N 2  
O7K C20 C19 SING Y N 3  
O7K C22 C23 DOUB Y N 4  
O7K CL  C15 SING N N 5  
O7K C19 O2  SING N N 6  
O7K C19 C18 DOUB Y N 7  
O7K C23 C18 SING Y N 8  
O7K C23 F1  SING N N 9  
O7K C18 C16 SING N N 10 
O7K C15 C16 DOUB Y N 11 
O7K C15 C14 SING Y N 12 
O7K C16 C17 SING Y N 13 
O7K C14 C9  DOUB Y N 14 
O7K C17 F   SING N N 15 
O7K C17 C8  DOUB Y N 16 
O7K C13 C12 SING N N 17 
O7K C9  C8  SING Y N 18 
O7K C9  C10 SING Y N 19 
O7K C8  N2  SING Y N 20 
O7K N3  C10 SING N N 21 
O7K N3  C11 SING N N 22 
O7K N3  C4  SING N N 23 
O7K C12 C11 SING N N 24 
O7K C12 N   SING N N 25 
O7K C10 C6  DOUB Y N 26 
O7K C3  N   SING N N 27 
O7K C3  C4  SING N N 28 
O7K N   C2  SING N N 29 
O7K N2  C7  DOUB Y N 30 
O7K C4  C5  SING N N 31 
O7K O   C2  DOUB N N 32 
O7K C2  C1  SING N N 33 
O7K C1  C   SING N N 34 
O7K C6  C7  SING Y N 35 
O7K C6  N1  SING N N 36 
O7K C5  N1  SING N N 37 
O7K C5  O1  DOUB N N 38 
O7K N1  C24 SING N N 39 
O7K C1  H1  SING N N 40 
O7K C1  H2  SING N N 41 
O7K C3  H3  SING N N 42 
O7K C3  H4  SING N N 43 
O7K C7  H5  SING N N 44 
O7K C11 H6  SING N N 45 
O7K C11 H7  SING N N 46 
O7K C12 H8  SING N N 47 
O7K C13 H9  SING N N 48 
O7K C13 H10 SING N N 49 
O7K C13 H11 SING N N 50 
O7K C14 H12 SING N N 51 
O7K C20 H13 SING N N 52 
O7K C21 H14 SING N N 53 
O7K C22 H15 SING N N 54 
O7K C24 H16 SING N N 55 
O7K C24 H17 SING N N 56 
O7K C24 H18 SING N N 57 
O7K O2  H19 SING N N 58 
O7K C4  H20 SING N N 59 
O7K C   H21 SING N N 60 
O7K C   H22 SING N N 61 
O7K C   H23 SING N N 62 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
O7K InChI            InChI                1.03  "InChI=1S/C25H23ClF2N4O3/c1-4-19(34)31-11-17-25(35)30(3)16-9-29-23-13(24(16)32(17)10-12(31)2)8-14(26)20(22(23)28)21-15(27)6-5-7-18(21)33/h5-9,12,17,33H,4,10-11H2,1-3H3/t12-,17-/m1/s1" 
O7K InChIKey         InChI                1.03  PJYYTOVRCBFDTN-SJKOYZFVSA-N                                                                                                                                                             
O7K SMILES_CANONICAL CACTVS               3.385 "CCC(=O)N1C[C@H]2N(C[C@H]1C)c3c(cnc4c(F)c(c(Cl)cc34)c5c(O)cccc5F)N(C)C2=O"                                                                                                              
O7K SMILES           CACTVS               3.385 "CCC(=O)N1C[CH]2N(C[CH]1C)c3c(cnc4c(F)c(c(Cl)cc34)c5c(O)cccc5F)N(C)C2=O"                                                                                                                
O7K SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCC(=O)N1C[C@@H]2C(=O)N(c3cnc4c(c3N2C[C@H]1C)cc(c(c4F)c5c(cccc5F)O)Cl)C"                                                                                                               
O7K SMILES           "OpenEye OEToolkits" 2.0.7 "CCC(=O)N1CC2C(=O)N(c3cnc4c(c3N2CC1C)cc(c(c4F)c5c(cccc5F)O)Cl)C"                                                                                                                        
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
O7K "Create component" 2020-02-18 PDBE 
O7K "Initial release"  2020-02-26 RCSB 
O7K "Modify synonyms"  2021-03-13 RCSB 
O7K "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      O7K 
_pdbx_chem_comp_synonyms.name         "(2R,4aR)-3-acryloyl-11-chloro-9-fluoro-10-(2-fluoro-6-hydroxyphenyl)-2,6-dimethyl-2,3,4,4a-tetrahydro-1H-pyrazino[1',2':4,5]pyrazino[2,3-c]quinolin-5(6H)-one." 
_pdbx_chem_comp_synonyms.provenance   PDB 
_pdbx_chem_comp_synonyms.type         ? 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            O7K 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
