data_N0K
#

_chem_comp.id                                   N0K
_chem_comp.name                                 "5-[ethyl(methyl)amino]-~{N}-[6-[[(1~{S},2~{R},3~{S},4~{R})-2-(hydroxymethyl)-3,4-bis(oxidanyl)cyclopentyl]amino]hexyl]naphthalene-1-sulfonamide"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C24 H37 N3 O5 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-11-04
_chem_comp.pdbx_modified_date                   2020-08-14
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       479.633
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    N0K
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  Y
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6TBH
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBE
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
N0K  C4   C1   C  0  1  N  N  S  63.548  28.246  33.611   7.005  -0.233  -0.714  C4   N0K   1  
N0K  C5   C2   C  0  1  N  N  R  63.041  28.793  34.984   8.202  -0.448   0.229  C5   N0K   2  
N0K  O4   O1   O  0  1  N  N  N  72.090  32.528  32.613  -4.996  -2.807  -1.434  O4   N0K   3  
N0K  C6   C3   C  0  1  N  N  S  61.803  27.965  35.293   9.062   0.830   0.149  C6   N0K   4  
N0K  C7   C4   C  0  1  Y  N  N  74.506  31.663  32.420  -4.784  -1.222   0.562  C7   N0K   5  
N0K  C8   C5   C  0  1  N  N  N  64.050  29.010  36.053   7.709  -0.660   1.662  C8   N0K   6  
N0K  C15  C6   C  0  1  N  N  N  65.994  28.150  33.579   4.629  -0.683  -0.822  C15  N0K   7  
N0K  S1   S1   S  0  1  N  N  N  73.050  31.643  33.119  -4.107  -2.569  -0.352  S1   N0K   8  
N0K  O2   O2   O  0  1  N  N  N  73.182  32.047  34.565  -3.757  -3.564   0.600  O2   N0K   9  
N0K  N21  N1   N  0  1  N  N  N  72.519  30.146  32.836  -2.686  -2.042  -1.020  N21  N0K  10  
N0K  C20  C7   C  0  1  N  N  N  71.216  29.934  33.485  -1.569  -1.654  -0.156  C20  N0K  11  
N0K  C19  C8   C  0  1  N  N  N  70.402  29.076  32.549  -0.281  -1.601  -0.980  C19  N0K  12  
N0K  C18  C9   C  0  1  N  N  N  69.782  27.854  33.298   0.886  -1.196  -0.077  C18  N0K  13  
N0K  C17  C10  C  0  1  N  N  N  68.419  28.207  33.692   2.174  -1.142  -0.901  C17  N0K  14  
N0K  C16  C11  C  0  1  N  N  N  67.221  27.256  33.520   3.341  -0.737   0.002  C16  N0K  15  
N0K  N7   N2   N  0  1  N  N  N  64.722  27.357  33.663   5.749  -0.295   0.045  N7   N0K  16  
N0K  C3   C12  C  0  1  N  N  N  62.354  27.399  33.109   7.179   1.169  -1.334  C3   N0K  17  
N0K  O9   O3   O  0  1  N  N  N  63.437  29.685  37.164   8.818  -0.974   2.506  O9   N0K  18  
N0K  O10  O4   O  0  1  N  N  N  62.256  26.683  35.693   8.720   1.729   1.206  O10  N0K  19  
N0K  C2   C13  C  0  1  N  N  R  61.177  27.829  33.941   8.699   1.446  -1.225  C2   N0K  20  
N0K  O11  O5   O  0  1  N  N  N  60.075  26.936  33.893   8.960   2.851  -1.234  O11  N0K  21  
N0K  H1   H1   H  0  1  N  N  N  63.724  29.086  32.922   7.005  -0.991  -1.497  H1   N0K  22  
N0K  H2   H2   H  0  1  N  N  N  62.654  29.796  34.750   8.783  -1.311  -0.097  H2   N0K  23  
N0K  H3   H3   H  0  1  N  N  N  61.141  28.456  36.022  10.122   0.580   0.190  H3   N0K  24  
N0K  H7   H7   H  0  1  N  N  N  64.444  28.039  36.387   7.227   0.251   2.018  H7   N0K  25  
N0K  H8   H8   H  0  1  N  N  N  64.873  29.625  35.660   6.993  -1.481   1.682  H8   N0K  26  
N0K  H9   H9   H  0  1  N  N  N  66.068  28.797  34.466   4.826  -1.665  -1.252  H9   N0K  27  
N0K  H10  H10  H  0  1  N  N  N  65.965  28.773  32.673   4.518   0.048  -1.622  H10  N0K  28  
N0K  H11  H11  H  0  1  N  N  N  72.422  30.012  31.850  -2.594  -1.990  -1.985  H11  N0K  29  
N0K  H12  H12  H  0  1  N  N  N  70.713  30.898  33.650  -1.766  -0.672   0.274  H12  N0K  30  
N0K  H13  H13  H  0  1  N  N  N  71.351  29.421  34.449  -1.458  -2.386   0.645  H13  N0K  31  
N0K  H14  H14  H  0  1  N  N  N  71.052  28.709  31.741  -0.084  -2.582  -1.410  H14  N0K  32  
N0K  H15  H15  H  0  1  N  N  N  69.591  29.683  32.120  -0.392  -0.869  -1.780  H15  N0K  33  
N0K  H16  H16  H  0  1  N  N  N  69.763  26.979  32.632   0.689  -0.214   0.353  H16  N0K  34  
N0K  H17  H17  H  0  1  N  N  N  70.380  27.622  34.191   0.997  -1.927   0.724  H17  N0K  35  
N0K  H20  H20  H  0  1  N  N  N  67.197  26.514  34.332   3.452  -1.469   0.802  H20  N0K  36  
N0K  H21  H21  H  0  1  N  N  N  67.275  26.738  32.551   3.143   0.245   0.432  H21  N0K  37  
N0K  H22  H22  H  0  1  N  N  N  64.683  26.717  32.896   5.562   0.583   0.506  H22  N0K  38  
N0K  H24  H24  H  0  1  N  N  N  62.164  27.596  32.044   6.866   1.166  -2.378  H24  N0K  39  
N0K  H25  H25  H  0  1  N  N  N  62.556  26.327  33.253   6.615   1.910  -0.767  H25  N0K  40  
N0K  H26  H26  H  0  1  N  N  N  64.083  29.823  37.847   8.579  -1.121   3.431  H26  N0K  41  
N0K  H27  H27  H  0  1  N  N  N  62.659  26.743  36.551   9.231   2.550   1.204  H27  N0K  42  
N0K  H28  H28  H  0  1  N  N  N  60.858  28.826  33.602   9.242   0.946  -2.028  H28  N0K  43  
N0K  H29  H29  H  0  1  N  N  N  59.373  27.270  34.439   8.676   3.299  -2.043  H29  N0K  44  
N0K  C1   C14  C  0  1  Y  N  N       ?       ?       ?  -5.187  -0.051  -0.102  C1   N0K  45  
N0K  C9   C15  C  0  1  Y  N  N       ?       ?       ?  -5.729   1.021   0.650  C9   N0K  46  
N0K  C10  C16  C  0  1  Y  N  N       ?       ?       ?  -5.853   0.892   2.042  C10  N0K  47  
N0K  C11  C17  C  0  1  Y  N  N       ?       ?       ?  -5.452  -0.257   2.652  C11  N0K  48  
N0K  C12  C18  C  0  1  Y  N  N       ?       ?       ?  -4.924  -1.314   1.912  C12  N0K  49  
N0K  C13  C19  C  0  1  Y  N  N       ?       ?       ?  -6.134   2.198  -0.016  C13  N0K  50  
N0K  C14  C20  C  0  1  Y  N  N       ?       ?       ?  -5.994   2.282  -1.385  C14  N0K  51  
N0K  C21  C21  C  0  1  Y  N  N       ?       ?       ?  -5.460   1.223  -2.113  C21  N0K  52  
N0K  C22  C22  C  0  1  Y  N  N       ?       ?       ?  -5.061   0.077  -1.496  C22  N0K  53  
N0K  N1   N3   N  0  1  N  N  N       ?       ?       ?  -6.670   3.263   0.703  N1   N0K  54  
N0K  C24  C24  C  0  1  N  N  N       ?       ?       ?  -5.857   4.475   0.533  C24  N0K  55  
N0K  C25  C25  C  0  1  N  N  N       ?       ?       ?  -8.067   3.508   0.319  C25  N0K  56  
N0K  H4   H4   H  0  1  N  N  N       ?       ?       ?  -4.614  -2.215   2.420  H4   N0K  57  
N0K  H5   H5   H  0  1  N  N  N       ?       ?       ?  -5.548  -0.353   3.723  H5   N0K  58  
N0K  H6   H6   H  0  1  N  N  N       ?       ?       ?  -6.264   1.702   2.627  H6   N0K  59  
N0K  H31  H31  H  0  1  N  N  N       ?       ?       ?  -4.649  -0.735  -2.077  H31  N0K  60  
N0K  H32  H32  H  0  1  N  N  N       ?       ?       ?  -5.360   1.312  -3.184  H32  N0K  61  
N0K  H33  H33  H  0  1  N  N  N       ?       ?       ?  -6.303   3.181  -1.898  H33  N0K  62  
N0K  H23  H23  H  0  1  N  N  N       ?       ?       ?  -8.660   2.616   0.521  H23  N0K  63  
N0K  H30  H30  H  0  1  N  N  N       ?       ?       ?  -8.461   4.345   0.896  H30  N0K  64  
N0K  H34  H34  H  0  1  N  N  N       ?       ?       ?  -8.116   3.744  -0.744  H34  N0K  65  
N0K  H35  H35  H  0  1  N  N  N       ?       ?       ?  -5.826   4.746  -0.523  H35  N0K  66  
N0K  H36  H36  H  0  1  N  N  N       ?       ?       ?  -6.298   5.292   1.104  H36  N0K  67  
N0K  H18  H18  H  0  1  N  N  N  68.466  28.443  34.765   2.371  -2.124  -1.331  H18  N0K  68  
N0K  H19  H19  H  0  1  N  N  N  68.167  29.117  33.127   2.063  -0.410  -1.701  H19  N0K  69  
N0K  H37  H37  H  0  1  N  N  N       ?       ?       ?  -4.845   4.287   0.890  H37  N0K  70  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
N0K  C7   S1   SING  N  N   1  
N0K  C19  C18  SING  N  N   2  
N0K  C19  C20  SING  N  N   3  
N0K  O4   S1   DOUB  N  N   4  
N0K  N21  S1   SING  N  N   5  
N0K  N21  C20  SING  N  N   6  
N0K  C3   C4   SING  N  N   7  
N0K  C3   C2   SING  N  N   8  
N0K  S1   O2   DOUB  N  N   9  
N0K  C18  C17  SING  N  N  10  
N0K  C16  C15  SING  N  N  11  
N0K  C16  C17  SING  N  N  12  
N0K  C15  N7   SING  N  N  13  
N0K  C4   N7   SING  N  N  14  
N0K  C4   C5   SING  N  N  15  
N0K  O11  C2   SING  N  N  16  
N0K  C2   C6   SING  N  N  17  
N0K  C5   C6   SING  N  N  18  
N0K  C5   C8   SING  N  N  19  
N0K  C6   O10  SING  N  N  20  
N0K  C8   O9   SING  N  N  21  
N0K  C4   H1   SING  N  N  22  
N0K  C5   H2   SING  N  N  23  
N0K  C6   H3   SING  N  N  24  
N0K  C8   H7   SING  N  N  25  
N0K  C8   H8   SING  N  N  26  
N0K  C15  H9   SING  N  N  27  
N0K  C15  H10  SING  N  N  28  
N0K  N21  H11  SING  N  N  29  
N0K  C20  H12  SING  N  N  30  
N0K  C20  H13  SING  N  N  31  
N0K  C19  H14  SING  N  N  32  
N0K  C19  H15  SING  N  N  33  
N0K  C18  H16  SING  N  N  34  
N0K  C18  H17  SING  N  N  35  
N0K  C16  H20  SING  N  N  36  
N0K  C16  H21  SING  N  N  37  
N0K  N7   H22  SING  N  N  38  
N0K  C3   H24  SING  N  N  39  
N0K  C3   H25  SING  N  N  40  
N0K  O9   H26  SING  N  N  41  
N0K  O10  H27  SING  N  N  42  
N0K  C2   H28  SING  N  N  43  
N0K  O11  H29  SING  N  N  44  
N0K  C7   C1   SING  Y  N  45  
N0K  C1   C9   DOUB  Y  N  46  
N0K  C9   C10  SING  Y  N  47  
N0K  C10  C11  DOUB  Y  N  48  
N0K  C11  C12  SING  Y  N  49  
N0K  C12  C7   DOUB  Y  N  50  
N0K  C9   C13  SING  Y  N  51  
N0K  C13  C14  DOUB  Y  N  52  
N0K  C14  C21  SING  Y  N  53  
N0K  C21  C22  DOUB  Y  N  54  
N0K  C22  C1   SING  Y  N  55  
N0K  C13  N1   SING  N  N  56  
N0K  N1   C24  SING  N  N  57  
N0K  N1   C25  SING  N  N  58  
N0K  C12  H4   SING  N  N  59  
N0K  C11  H5   SING  N  N  60  
N0K  C10  H6   SING  N  N  61  
N0K  C22  H31  SING  N  N  62  
N0K  C21  H32  SING  N  N  63  
N0K  C14  H33  SING  N  N  64  
N0K  C25  H23  SING  N  N  65  
N0K  C25  H30  SING  N  N  66  
N0K  C25  H34  SING  N  N  67  
N0K  C24  H35  SING  N  N  68  
N0K  C24  H36  SING  N  N  69  
N0K  C17  H18  SING  N  N  70  
N0K  C17  H19  SING  N  N  71  
N0K  C24  H37  SING  N  N  72  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
N0K  InChI             InChI                 1.03   "InChI=1S/C24H37N3O5S/c1-27(2)21-11-7-10-18-17(21)9-8-12-23(18)33(31,32)26-14-6-4-3-5-13-25-20-15-22(29)24(30)19(20)16-28/h7-12,19-20,22,24-26,28-30H,3-6,13-16H2,1-2H3/t19-,20-,22+,24-/m0/s1"  
N0K  InChIKey          InChI                 1.03   YQJKLKLPVRSCCE-QRVLJTFESA-N  
N0K  SMILES_CANONICAL  CACTVS                3.385  "CN(C)c1cccc2c1cccc2[S](=O)(=O)NCCCCCCN[C@H]3C[C@@H](O)[C@@H](O)[C@H]3CO"  
N0K  SMILES            CACTVS                3.385  "CN(C)c1cccc2c1cccc2[S](=O)(=O)NCCCCCCN[CH]3C[CH](O)[CH](O)[CH]3CO"  
N0K  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CN(C)c1cccc2c1cccc2S(=O)(=O)NCCCCCCN[C@H]3C[C@H]([C@H]([C@H]3CO)O)O"  
N0K  SMILES            "OpenEye OEToolkits"  2.0.7  "CN(C)c1cccc2c1cccc2S(=O)(=O)NCCCCCCNC3CC(C(C3CO)O)O"  
#
_pdbx_chem_comp_identifier.comp_id          N0K
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "5-(dimethylamino)-~{N}-[6-[[(1~{S},2~{R},3~{S},4~{R})-2-(hydroxymethyl)-3,4-bis(oxidanyl)cyclopentyl]amino]hexyl]naphthalene-1-sulfonamide"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
N0K  "Create component"  2019-11-04  PDBE  
N0K  "Initial release"   2020-08-19  RCSB  
##
