data_KDK
#

_chem_comp.id                                   KDK
_chem_comp.name                                 "4-phenyl-5-(piperidin-4-ylmethyl)thiophene-2-carboximidamide"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C17 H21 N3 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-05-14
_chem_comp.pdbx_modified_date                   2020-06-12
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       299.434
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    KDK
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6RP6
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBE
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
KDK  C10   C1   C  0  1  Y  N  N  21.166  21.426   9.726  -0.242  -2.557   1.230  C10   KDK   1  
KDK  C13   C2   C  0  1  Y  N  N  20.462  23.854   8.540  -1.440  -3.708  -0.990  C13   KDK   2  
KDK  C15   C3   C  0  1  N  N  N  23.022  21.468   5.881  -0.981   0.517  -1.352  C15   KDK   3  
KDK  C17   C4   C  0  1  N  N  N  25.161  20.785   7.003  -1.516   2.339   0.274  C17   KDK   4  
KDK  C20   C5   C  0  1  N  N  N  26.307  23.440   6.513  -4.293   1.519   0.335  C20   KDK   5  
KDK  C21   C6   C  0  1  N  N  N  24.900  23.067   6.025  -3.360   1.023  -0.771  C21   KDK   6  
KDK  C02   C7   C  0  1  Y  N  N  22.190  20.286   6.510   0.402   0.315  -0.789  C02   KDK   7  
KDK  C03   C8   C  0  1  Y  N  N  21.281  20.331   7.594   0.832  -0.818  -0.199  C03   KDK   8  
KDK  C04   C9   C  0  1  Y  N  N  20.695  19.098   7.904   2.146  -0.775   0.243  C04   KDK   9  
KDK  C05   C10  C  0  1  Y  N  N  21.065  18.014   7.083   2.757   0.404   0.000  C05   KDK  10  
KDK  C06   C11  C  0  1  N  N  N  20.621  16.540   7.127   4.147   0.730   0.360  C06   KDK  11  
KDK  C09   C12  C  0  1  Y  N  N  21.029  21.500   8.344  -0.030  -2.015  -0.036  C09   KDK  12  
KDK  C11   C13  C  0  1  Y  N  N  20.938  22.558  10.521  -1.045  -3.671   1.375  C11   KDK  13  
KDK  C12   C14  C  0  1  Y  N  N  20.587  23.768   9.921  -1.642  -4.245   0.268  C12   KDK  14  
KDK  C14   C15  C  0  1  Y  N  N  20.685  22.719   7.743  -0.631  -2.601  -1.149  C14   KDK  15  
KDK  C16   C16  C  0  1  N  N  N  24.242  21.925   6.750  -1.928   0.954  -0.233  C16   KDK  16  
KDK  C18   C17  C  0  1  N  N  N  26.489  21.214   7.644  -2.502   2.798   1.351  C18   KDK  17  
KDK  N07   N1   N  0  1  N  N  N  20.926  15.781   6.166   4.664   1.974   0.059  N07   KDK  18  
KDK  N08   N2   N  0  1  N  N  N  19.882  16.028   8.246   4.890  -0.158   0.964  N08   KDK  19  
KDK  N19   N3   N  0  1  N  N  N  27.184  22.298   6.885  -3.857   2.847   0.786  N19   KDK  20  
KDK  S01   S1   S  0  1  Y  N  N  22.206  18.641   5.943   1.641   1.488  -0.817  S01   KDK  21  
KDK  H101  H1   H  0  0  N  N  N  21.449  20.492  10.189   0.225  -2.110   2.095  H101  KDK  22  
KDK  H131  H2   H  0  0  N  N  N  20.193  24.793   8.079  -1.909  -4.160  -1.851  H131  KDK  23  
KDK  H151  H3   H  0  0  N  N  N  23.399  21.141   4.901  -0.951   1.286  -2.124  H151  KDK  24  
KDK  H152  H4   H  0  0  N  N  N  22.351  22.330   5.747  -1.337  -0.419  -1.784  H152  KDK  25  
KDK  H172  H5   H  0  0  N  N  N  24.660  20.074   7.677  -0.513   2.287   0.698  H172  KDK  26  
KDK  H171  H6   H  0  0  N  N  N  25.378  20.291   6.045  -1.525   3.048  -0.553  H171  KDK  27  
KDK  H201  H7   H  0  0  N  N  N  26.806  24.001   5.709  -5.311   1.583  -0.049  H201  KDK  28  
KDK  H202  H8   H  0  0  N  N  N  26.198  24.085   7.398  -4.264   0.824   1.174  H202  KDK  29  
KDK  H211  H9   H  0  0  N  N  N  24.258  23.953   6.135  -3.675   0.030  -1.095  H211  KDK  30  
KDK  H212  H10  H  0  0  N  N  N  24.971  22.796   4.961  -3.399   1.710  -1.616  H212  KDK  31  
KDK  H041  H11  H  0  0  N  N  N  20.001  18.984   8.723   2.633  -1.604   0.735  H041  KDK  32  
KDK  H111  H12  H  0  0  N  N  N  21.034  22.494  11.595  -1.206  -4.094   2.356  H111  KDK  33  
KDK  H121  H13  H  0  0  N  N  N  20.412  24.641  10.532  -2.276  -5.111   0.388  H121  KDK  34  
KDK  H141  H14  H  0  0  N  N  N  20.592  22.785   6.669  -0.470  -2.185  -2.132  H141  KDK  35  
KDK  H161  H15  H  0  0  N  N  N  23.855  22.293   7.712  -1.880   0.237   0.587  H161  KDK  36  
KDK  H181  H16  H  0  0  N  N  N  27.154  20.339   7.692  -2.482   2.096   2.185  H181  KDK  37  
KDK  H182  H17  H  0  0  N  N  N  26.285  21.575   8.663  -2.220   3.789   1.704  H182  KDK  38  
KDK  H1    H18  H  0  1  N  N  N  20.653  14.819   6.182   4.112   2.633  -0.390  H1    KDK  39  
KDK  H071  H19  H  0  0  N  N  N  21.441  16.141   5.388   5.580   2.188   0.296  H071  KDK  40  
KDK  H082  H20  H  0  0  N  N  N  19.716  16.730   8.938   4.527  -1.032   1.176  H082  KDK  41  
KDK  H191  H21  H  0  0  N  N  N  27.558  21.903   6.046  -3.911   3.520   0.035  H191  KDK  42  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
KDK  C15  C02   SING  N  N   1  
KDK  C15  C16   SING  N  N   2  
KDK  S01  C02   SING  Y  N   3  
KDK  S01  C05   SING  Y  N   4  
KDK  C21  C20   SING  N  N   5  
KDK  C21  C16   SING  N  N   6  
KDK  N07  C06   SING  N  N   7  
KDK  C02  C03   DOUB  Y  N   8  
KDK  C20  N19   SING  N  N   9  
KDK  C16  C17   SING  N  N  10  
KDK  N19  C18   SING  N  N  11  
KDK  C17  C18   SING  N  N  12  
KDK  C05  C06   SING  N  N  13  
KDK  C05  C04   DOUB  Y  N  14  
KDK  C06  N08   DOUB  N  N  15  
KDK  C03  C04   SING  Y  N  16  
KDK  C03  C09   SING  N  N  17  
KDK  C14  C09   DOUB  Y  N  18  
KDK  C14  C13   SING  Y  N  19  
KDK  C09  C10   SING  Y  N  20  
KDK  C13  C12   DOUB  Y  N  21  
KDK  C10  C11   DOUB  Y  N  22  
KDK  C12  C11   SING  Y  N  23  
KDK  C10  H101  SING  N  N  24  
KDK  C13  H131  SING  N  N  25  
KDK  C15  H151  SING  N  N  26  
KDK  C15  H152  SING  N  N  27  
KDK  C17  H172  SING  N  N  28  
KDK  C17  H171  SING  N  N  29  
KDK  C20  H201  SING  N  N  30  
KDK  C20  H202  SING  N  N  31  
KDK  C21  H211  SING  N  N  32  
KDK  C21  H212  SING  N  N  33  
KDK  C04  H041  SING  N  N  34  
KDK  C11  H111  SING  N  N  35  
KDK  C12  H121  SING  N  N  36  
KDK  C14  H141  SING  N  N  37  
KDK  C16  H161  SING  N  N  38  
KDK  C18  H181  SING  N  N  39  
KDK  C18  H182  SING  N  N  40  
KDK  N07  H1    SING  N  N  41  
KDK  N07  H071  SING  N  N  42  
KDK  N08  H082  SING  N  N  43  
KDK  N19  H191  SING  N  N  44  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
KDK  InChI             InChI                 1.03   "InChI=1S/C17H21N3S/c18-17(19)16-11-14(13-4-2-1-3-5-13)15(21-16)10-12-6-8-20-9-7-12/h1-5,11-12,20H,6-10H2,(H3,18,19)"  
KDK  InChIKey          InChI                 1.03   YAVOSGXIZPYJCA-UHFFFAOYSA-N  
KDK  SMILES_CANONICAL  CACTVS                3.385  "NC(=N)c1sc(CC2CCNCC2)c(c1)c3ccccc3"  
KDK  SMILES            CACTVS                3.385  "NC(=N)c1sc(CC2CCNCC2)c(c1)c3ccccc3"  
KDK  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "[H]/N=C(/c1cc(c(s1)CC2CCNCC2)c3ccccc3)\N"  
KDK  SMILES            "OpenEye OEToolkits"  2.0.7  "c1ccc(cc1)c2cc(sc2CC3CCNCC3)C(=N)N"  
#
_pdbx_chem_comp_identifier.comp_id          KDK
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "4-phenyl-5-(piperidin-4-ylmethyl)thiophene-2-carboximidamide"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
KDK  "Create component"  2019-05-14  PDBE  
KDK  "Initial release"   2020-06-17  RCSB  
##
