data_J5K
#

_chem_comp.id                                   J5K
_chem_comp.name                                 "(2~{S})-1-[(2~{R})-2-azanyl-3-phenyl-propanoyl]-~{N}-[(6-azanylpyridin-3-yl)methyl]pyrrolidine-2-carboxamide"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C20 H25 N5 O2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        D-Phe-Pro-p-aminopyridine
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-01-31
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       367.445
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    J5K
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6QL0
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
J5K  C4   C1   C  0  1  Y  N  N  16.597  -26.915  -15.521   7.557  -1.182   0.138  C4   J5K   1  
J5K  C5   C2   C  0  1  Y  N  N  15.725  -27.651  -14.748   8.058  -0.030  -0.440  C5   J5K   2  
J5K  C6   C3   C  0  1  Y  N  N  15.832  -27.613  -13.374   7.249   1.083  -0.577  C6   J5K   3  
J5K  N1   N1   N  0  1  N  N  N  16.608  -23.059  -14.501   1.013   0.621   0.195  N1   J5K   4  
J5K  C7   C4   C  0  1  Y  N  N  16.802  -26.828  -12.771   5.939   1.043  -0.138  C7   J5K   5  
J5K  C8   C5   C  0  1  N  N  N  17.898  -23.078  -14.128   1.665  -0.558   0.220  C8   J5K   6  
J5K  N2   N2   N  0  1  N  N  N  16.076  -20.376  -14.841  -2.635   0.069  -0.083  N2   J5K   7  
J5K  C9   C6   C  0  1  N  N  S  16.235  -22.580  -15.837  -0.385   0.836   0.599  C9   J5K   8  
J5K  C10  C7   C  0  1  N  N  N  16.338  -21.062  -15.952  -1.302   0.023  -0.277  C10  J5K   9  
J5K  C11  C8   C  0  1  N  N  N  15.942  -18.925  -14.840  -3.527  -0.721  -0.935  C11  J5K  10  
J5K  C12  C9   C  0  1  Y  N  N  14.649  -18.478  -15.475  -4.956  -0.494  -0.513  C12  J5K  11  
J5K  N3   N3   N  0  1  N  N  N  11.212  -17.228  -17.366  -8.843   0.018   0.728  N3   J5K  12  
J5K  C13  C10  C  0  1  Y  N  N  13.420  -18.701  -14.866  -5.702   0.530  -1.083  C13  J5K  13  
J5K  C14  C11  C  0  1  Y  N  N  12.250  -18.302  -15.476  -7.009   0.704  -0.668  C14  J5K  14  
J5K  C15  C12  C  0  1  Y  N  N  12.327  -17.648  -16.727  -7.531  -0.147   0.301  C15  J5K  15  
J5K  N4   N4   N  0  1  Y  N  N  13.524  -17.421  -17.326  -6.788  -1.112   0.821  N4   J5K  16  
J5K  O1   O1   O  0  1  N  N  N  18.775  -22.618  -14.839   1.093  -1.560   0.596  O1   J5K  17  
J5K  C    C13  C  0  1  N  N  R  18.255  -23.733  -12.805   3.105  -0.632  -0.218  C    J5K  18  
J5K  C1   C14  C  0  1  N  N  N  18.714  -25.194  -12.883   4.010  -0.151   0.918  C1   J5K  19  
J5K  C2   C15  C  0  1  Y  N  N  17.686  -26.087  -13.538   5.438  -0.108   0.439  C2   J5K  20  
J5K  C3   C16  C  0  1  Y  N  N  17.579  -26.146  -14.922   6.247  -1.221   0.577  C3   J5K  21  
J5K  N    N5   N  0  1  N  N  N  19.211  -22.892  -12.074   3.442  -2.021  -0.558  N    J5K  22  
J5K  C19  C17  C  0  1  N  N  N  15.444  -23.552  -13.747   1.584   1.910  -0.236  C19  J5K  23  
J5K  C18  C18  C  0  1  N  N  N  14.267  -23.014  -14.544   0.725   2.983   0.479  C18  J5K  24  
J5K  C17  C19  C  0  1  N  N  N  14.777  -23.036  -15.976  -0.685   2.340   0.428  C17  J5K  25  
J5K  O    O2   O  0  1  N  N  N  16.622  -20.530  -17.022  -0.842  -0.672  -1.158  O    J5K  26  
J5K  C16  C20  C  0  1  Y  N  N  14.636  -17.839  -16.703  -5.539  -1.305   0.440  C16  J5K  27  
J5K  H1   H1   H  0  1  N  N  N  16.514  -26.939  -16.598   8.187  -2.053   0.241  H1   J5K  28  
J5K  H2   H2   H  0  1  N  N  N  14.962  -28.255  -15.216   9.082   0.001  -0.783  H2   J5K  29  
J5K  H3   H3   H  0  1  N  N  N  15.158  -28.197  -12.765   7.641   1.983  -1.027  H3   J5K  30  
J5K  H4   H4   H  0  1  N  N  N  16.869  -26.794  -11.694   5.307   1.913  -0.245  H4   J5K  31  
J5K  H5   H5   H  0  1  N  N  N  15.968  -20.873  -13.980  -3.004   0.625   0.622  H5   J5K  32  
J5K  H6   H6   H  0  1  N  N  N  16.853  -23.059  -16.611  -0.517   0.548   1.642  H6   J5K  33  
J5K  H7   H7   H  0  1  N  N  N  16.782  -18.490  -15.401  -3.402  -0.416  -1.974  H7   J5K  34  
J5K  H8   H8   H  0  1  N  N  N  15.970  -18.566  -13.801  -3.283  -1.779  -0.835  H8   J5K  35  
J5K  H9   H9   H  0  1  N  N  N  11.466  -16.792  -18.229  -9.391   0.723   0.351  H9   J5K  36  
J5K  H10  H10  H  0  1  N  N  N  10.619  -18.012  -17.551  -9.211  -0.573   1.404  H10  J5K  37  
J5K  H11  H11  H  0  1  N  N  N  13.381  -19.192  -13.905  -5.270   1.175  -1.834  H11  J5K  38  
J5K  H12  H12  H  0  1  N  N  N  11.294  -18.485  -15.008  -7.617   1.490  -1.090  H12  J5K  39  
J5K  H13  H13  H  0  1  N  N  N  17.329  -23.741  -12.212   3.251   0.002  -1.093  H13  J5K  40  
J5K  H14  H14  H  0  1  N  N  N  18.901  -25.560  -11.863   3.701   0.846   1.230  H14  J5K  41  
J5K  H15  H15  H  0  1  N  N  N  19.645  -25.241  -13.466   3.929  -0.837   1.761  H15  J5K  42  
J5K  H16  H16  H  0  1  N  N  N  18.269  -25.586  -15.536   5.855  -2.121   1.029  H16  J5K  43  
J5K  H17  H17  H  0  1  N  N  N  19.442  -23.328  -11.204   3.315  -2.629   0.236  H17  J5K  44  
J5K  H18  H18  H  0  1  N  N  N  20.041  -22.778  -12.621   2.903  -2.341  -1.349  H18  J5K  45  
J5K  H20  H20  H  0  1  N  N  N  15.441  -23.156  -12.721   2.625   1.987   0.078  H20  J5K  46  
J5K  H21  H21  H  0  1  N  N  N  15.430  -24.651  -13.715   1.505   2.017  -1.318  H21  J5K  47  
J5K  H22  H22  H  0  1  N  N  N  14.014  -21.990  -14.231   1.051   3.122   1.509  H22  J5K  48  
J5K  H23  H23  H  0  1  N  N  N  13.385  -23.661  -14.430   0.745   3.926  -0.067  H23  J5K  49  
J5K  H24  H24  H  0  1  N  N  N  14.205  -22.341  -16.609  -1.164   2.530  -0.533  H24  J5K  50  
J5K  H25  H25  H  0  1  N  N  N  14.720  -24.050  -16.399  -1.303   2.705   1.247  H25  J5K  51  
J5K  H26  H26  H  0  1  N  N  N  15.583  -17.666  -17.192  -4.963  -2.102   0.886  H26  J5K  52  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
J5K  N3   C15  SING  N  N   1  
J5K  N4   C15  DOUB  Y  N   2  
J5K  N4   C16  SING  Y  N   3  
J5K  O    C10  DOUB  N  N   4  
J5K  C15  C14  SING  Y  N   5  
J5K  C16  C12  DOUB  Y  N   6  
J5K  C17  C9   SING  N  N   7  
J5K  C17  C18  SING  N  N   8  
J5K  C10  C9   SING  N  N   9  
J5K  C10  N2   SING  N  N  10  
J5K  C9   N1   SING  N  N  11  
J5K  C4   C3   DOUB  Y  N  12  
J5K  C4   C5   SING  Y  N  13  
J5K  C14  C13  DOUB  Y  N  14  
J5K  C12  C13  SING  Y  N  15  
J5K  C12  C11  SING  N  N  16  
J5K  C3   C2   SING  Y  N  17  
J5K  N2   C11  SING  N  N  18  
J5K  O1   C8   DOUB  N  N  19  
J5K  C5   C6   DOUB  Y  N  20  
J5K  C18  C19  SING  N  N  21  
J5K  N1   C8   SING  N  N  22  
J5K  N1   C19  SING  N  N  23  
J5K  C8   C    SING  N  N  24  
J5K  C2   C1   SING  N  N  25  
J5K  C2   C7   DOUB  Y  N  26  
J5K  C6   C7   SING  Y  N  27  
J5K  C1   C    SING  N  N  28  
J5K  C    N    SING  N  N  29  
J5K  C4   H1   SING  N  N  30  
J5K  C5   H2   SING  N  N  31  
J5K  C6   H3   SING  N  N  32  
J5K  C7   H4   SING  N  N  33  
J5K  N2   H5   SING  N  N  34  
J5K  C9   H6   SING  N  N  35  
J5K  C11  H7   SING  N  N  36  
J5K  C11  H8   SING  N  N  37  
J5K  N3   H9   SING  N  N  38  
J5K  N3   H10  SING  N  N  39  
J5K  C13  H11  SING  N  N  40  
J5K  C14  H12  SING  N  N  41  
J5K  C    H13  SING  N  N  42  
J5K  C1   H14  SING  N  N  43  
J5K  C1   H15  SING  N  N  44  
J5K  C3   H16  SING  N  N  45  
J5K  N    H17  SING  N  N  46  
J5K  N    H18  SING  N  N  47  
J5K  C19  H20  SING  N  N  48  
J5K  C19  H21  SING  N  N  49  
J5K  C18  H22  SING  N  N  50  
J5K  C18  H23  SING  N  N  51  
J5K  C17  H24  SING  N  N  52  
J5K  C17  H25  SING  N  N  53  
J5K  C16  H26  SING  N  N  54  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
J5K  InChI             InChI                 1.03   "InChI=1S/C20H25N5O2/c21-16(11-14-5-2-1-3-6-14)20(27)25-10-4-7-17(25)19(26)24-13-15-8-9-18(22)23-12-15/h1-3,5-6,8-9,12,16-17H,4,7,10-11,13,21H2,(H2,22,23)(H,24,26)/t16-,17+/m1/s1"  
J5K  InChIKey          InChI                 1.03   IWAABGNHPAYUJJ-SJORKVTESA-N  
J5K  SMILES_CANONICAL  CACTVS                3.385  "N[C@H](Cc1ccccc1)C(=O)N2CCC[C@H]2C(=O)NCc3ccc(N)nc3"  
J5K  SMILES            CACTVS                3.385  "N[CH](Cc1ccccc1)C(=O)N2CCC[CH]2C(=O)NCc3ccc(N)nc3"  
J5K  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "c1ccc(cc1)C[C@H](C(=O)N2CCC[C@H]2C(=O)NCc3ccc(nc3)N)N"  
J5K  SMILES            "OpenEye OEToolkits"  2.0.6  "c1ccc(cc1)CC(C(=O)N2CCCC2C(=O)NCc3ccc(nc3)N)N"  
#
_pdbx_chem_comp_identifier.comp_id          J5K
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.6
_pdbx_chem_comp_identifier.identifier       "(2~{S})-1-[(2~{R})-2-azanyl-3-phenyl-propanoyl]-~{N}-[(6-azanylpyridin-3-yl)methyl]pyrrolidine-2-carboxamide"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
J5K  "Create component"  2019-01-31  EBI   
J5K  "Initial release"   2020-02-19  RCSB  
J5K  "Modify synonyms"   2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     J5K
_pdbx_chem_comp_synonyms.name        D-Phe-Pro-p-aminopyridine
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
