data_HRK
#

_chem_comp.id                                   HRK
_chem_comp.name                                 "(2~{R},3~{S},4~{S},5~{R},6~{S})-2-(hydroxymethyl)-6-[(2~{S},3~{R},4~{S},5~{R},6~{R})-6-(hydroxymethyl)-3,5-bis(oxidanyl)-4-(4-phenyl-1,2,3-triazol-1-yl)oxan-2-yl]sulfanyl-oxane-3,4,5-triol"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C20 H27 N3 O9 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-02-01
_chem_comp.pdbx_modified_date                   2019-07-05
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       485.508
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    HRK
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6QLS
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
HRK  C02   C1   C  0  1  N  N  R  -18.349   6.860  -0.865   1.375   2.123  -0.786  C02   HRK   1  
HRK  C03   C2   C  0  1  N  N  R  -19.837   6.718  -1.133  -0.124   2.321  -1.025  C03   HRK   2  
HRK  C04   C3   C  0  1  N  N  N  -20.446   5.594  -0.306  -0.337   3.062  -2.347  C04   HRK   3  
HRK  C07   C4   C  0  1  N  N  S  -20.055   9.066  -1.508  -0.653   0.279   0.116  C07   HRK   4  
HRK  C09   C5   C  0  1  N  N  S  -22.728   9.981  -1.266  -3.266  -0.767  -0.256  C09   HRK   5  
HRK  C10   C6   C  0  1  N  N  R  -23.657  10.360  -0.093  -4.142  -1.986  -0.559  C10   HRK   6  
HRK  C12   C7   C  0  1  N  N  S  -25.106  10.033  -0.450  -5.606  -1.544  -0.644  C12   HRK   7  
HRK  C14   C8   C  0  1  N  N  S  -25.493  10.676  -1.868  -5.999  -0.858   0.668  C14   HRK   8  
HRK  C16   C9   C  0  1  N  N  R  -24.476  10.191  -2.895  -5.051   0.317   0.924  C16   HRK   9  
HRK  C17   C10  C  0  1  N  N  N  -24.717  10.725  -4.335  -5.399   0.971   2.263  C17   HRK  10  
HRK  C20   C11  C  0  1  N  N  R  -18.590   9.365  -1.304   0.827  -0.001   0.402  C20   HRK  11  
HRK  C22   C12  C  0  1  N  N  S  -17.821   8.066  -1.670   1.579   1.329   0.508  C22   HRK  12  
HRK  C24   C13  C  0  1  Y  N  N  -15.686   8.485  -0.255   3.707   0.049   0.165  C24   HRK  13  
HRK  C25   C14  C  0  1  Y  N  N  -14.300   8.436  -0.635   4.991   0.197   0.603  C25   HRK  14  
HRK  C26   C15  C  0  1  Y  N  N  -13.128   8.621   0.174   6.149  -0.675   0.282  C26   HRK  15  
HRK  C27   C16  C  0  1  Y  N  N  -13.189   8.538   1.547   7.406  -0.391   0.811  C27   HRK  16  
HRK  C28   C17  C  0  1  Y  N  N  -12.078   8.689   2.359   8.479  -1.204   0.508  C28   HRK  17  
HRK  C29   C18  C  0  1  Y  N  N  -10.842   8.907   1.786   8.308  -2.300  -0.318  C29   HRK  18  
HRK  C30   C19  C  0  1  Y  N  N  -10.736   8.962   0.403   7.062  -2.587  -0.845  C30   HRK  19  
HRK  C31   C20  C  0  1  Y  N  N  -11.877   8.823  -0.382   5.981  -1.783  -0.545  C31   HRK  20  
HRK  N23   N1   N  0  1  Y  N  N  -16.392   8.179  -1.476   3.007   1.071   0.705  N23   HRK  21  
HRK  N32   N2   N  0  1  Y  N  N  -14.333   8.099  -2.004   4.996   1.291   1.385  N32   HRK  22  
HRK  N33   N3   N  0  1  Y  N  N  -15.520   7.946  -2.453   3.807   1.780   1.421  N33   HRK  23  
HRK  O01   O1   O  0  1  N  N  N  -18.095   7.112   0.513   1.942   1.403  -1.882  O01   HRK  24  
HRK  O05   O2   O  0  1  N  N  N  -21.832   5.479  -0.603  -1.727   3.349  -2.513  O05   HRK  25  
HRK  O06   O3   O  0  1  N  N  N  -20.481   7.937  -0.785  -0.768   1.047  -1.083  O06   HRK  26  
HRK  O11   O4   O  0  1  N  N  N  -23.271   9.701   1.098  -3.744  -2.562  -1.804  O11   HRK  27  
HRK  O13   O5   O  0  1  N  N  N  -25.956  10.599   0.540  -6.439  -2.686  -0.854  O13   HRK  28  
HRK  O15   O6   O  0  1  N  N  N  -26.777  10.149  -2.223  -7.341  -0.379   0.573  O15   HRK  29  
HRK  O18   O7   O  0  1  N  N  N  -24.749  12.141  -4.242  -4.592   2.135   2.448  O18   HRK  30  
HRK  O19   O8   O  0  1  N  N  N  -23.178  10.535  -2.491  -3.704  -0.158   0.961  O19   HRK  31  
HRK  O21   O9   O  0  1  N  N  N  -18.193  10.369  -2.233   0.949  -0.719   1.632  O21   HRK  32  
HRK  S08   S1   S  0  1  N  N  N  -21.029  10.486  -0.947  -1.539  -1.292  -0.082  S08   HRK  33  
HRK  H021  H1   H  0  0  N  N  N  -17.829   5.950  -1.198   1.861   3.095  -0.698  H021  HRK  34  
HRK  H031  H2   H  0  0  N  N  N  -19.988   6.498  -2.200  -0.548   2.905  -0.208  H031  HRK  35  
HRK  H042  H3   H  0  0  N  N  N  -19.940   4.647  -0.547   0.228   3.994  -2.336  H042  HRK  36  
HRK  H041  H4   H  0  0  N  N  N  -20.318   5.816   0.764   0.007   2.438  -3.172  H041  HRK  37  
HRK  H071  H5   H  0  0  N  N  N  -20.264   8.953  -2.582  -1.084   0.837   0.947  H071  HRK  38  
HRK  H091  H6   H  0  0  N  N  N  -22.700   8.884  -1.340  -3.348  -0.049  -1.072  H091  HRK  39  
HRK  H101  H7   H  0  0  N  N  N  -23.583  11.448   0.053  -4.029  -2.723   0.236  H101  HRK  40  
HRK  H121  H8   H  0  0  N  N  N  -25.236   8.942  -0.510  -5.729  -0.846  -1.473  H121  HRK  41  
HRK  H141  H9   H  0  0  N  N  N  -25.492  11.774  -1.797  -5.924  -1.572   1.488  H141  HRK  42  
HRK  H161  H10  H  0  0  N  N  N  -24.555   9.095  -2.942  -5.156   1.049   0.123  H161  HRK  43  
HRK  H172  H11  H  0  0  N  N  N  -25.674  10.348  -4.724  -6.451   1.253   2.267  H172  HRK  44  
HRK  H171  H12  H  0  0  N  N  N  -23.900  10.407  -5.000  -5.209   0.265   3.072  H171  HRK  45  
HRK  H201  H13  H  0  0  N  N  N  -18.386   9.653  -0.262   1.249  -0.594  -0.409  H201  HRK  46  
HRK  H221  H14  H  0  0  N  N  N  -18.015   7.861  -2.733   1.192   1.902   1.352  H221  HRK  47  
HRK  H241  H15  H  0  0  N  N  N  -16.102   8.701   0.718   3.328  -0.726  -0.486  H241  HRK  48  
HRK  H271  H16  H  0  0  N  N  N  -14.145   8.347   2.011   7.541   0.465   1.455  H271  HRK  49  
HRK  H281  H17  H  0  0  N  N  N  -12.178   8.637   3.433   9.454  -0.984   0.917  H281  HRK  50  
HRK  H291  H18  H  0  0  N  N  N   -9.967   9.033   2.406   9.151  -2.934  -0.552  H291  HRK  51  
HRK  H301  H19  H  0  0  N  N  N   -9.773   9.112  -0.062   6.934  -3.444  -1.490  H301  HRK  52  
HRK  H311  H20  H  0  0  N  N  N  -11.783   8.874  -1.457   5.008  -2.011  -0.954  H311  HRK  53  
HRK  H011  H21  H  0  0  N  N  N  -18.411   6.382   1.032   1.847   1.847  -2.736  H011  HRK  54  
HRK  H051  H22  H  0  0  N  N  N  -22.210   4.777  -0.086  -1.936   3.819  -3.332  H051  HRK  55  
HRK  H111  H23  H  0  0  N  N  N  -23.857   9.951   1.803  -2.824  -2.860  -1.823  H111  HRK  56  
HRK  H131  H24  H  0  0  N  N  N  -25.743  10.231   1.389  -6.241  -3.174  -1.666  H131  HRK  57  
HRK  H151  H25  H  0  0  N  N  N  -27.425  10.441  -1.593  -7.996  -1.071   0.407  H151  HRK  58  
HRK  H181  H26  H  0  0  N  N  N  -24.895  12.512  -5.104  -4.759   2.602   3.278  H181  HRK  59  
HRK  H211  H27  H  0  0  N  N  N  -18.647  11.180  -2.037   0.491  -1.571   1.636  H211  HRK  60  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
HRK  C17  O18   SING  N  N   1  
HRK  C17  C16   SING  N  N   2  
HRK  C16  O19   SING  N  N   3  
HRK  C16  C14   SING  N  N   4  
HRK  O19  C09   SING  N  N   5  
HRK  N33  N32   DOUB  Y  N   6  
HRK  N33  N23   SING  Y  N   7  
HRK  O21  C20   SING  N  N   8  
HRK  O15  C14   SING  N  N   9  
HRK  N32  C25   SING  Y  N  10  
HRK  C14  C12   SING  N  N  11  
HRK  C22  N23   SING  N  N  12  
HRK  C22  C20   SING  N  N  13  
HRK  C22  C02   SING  N  N  14  
HRK  C07  C20   SING  N  N  15  
HRK  C07  S08   SING  N  N  16  
HRK  C07  O06   SING  N  N  17  
HRK  N23  C24   SING  Y  N  18  
HRK  C09  S08   SING  N  N  19  
HRK  C09  C10   SING  N  N  20  
HRK  C03  C02   SING  N  N  21  
HRK  C03  O06   SING  N  N  22  
HRK  C03  C04   SING  N  N  23  
HRK  C02  O01   SING  N  N  24  
HRK  C25  C24   DOUB  Y  N  25  
HRK  C25  C26   SING  N  N  26  
HRK  O05  C04   SING  N  N  27  
HRK  C12  C10   SING  N  N  28  
HRK  C12  O13   SING  N  N  29  
HRK  C31  C26   DOUB  Y  N  30  
HRK  C31  C30   SING  Y  N  31  
HRK  C10  O11   SING  N  N  32  
HRK  C26  C27   SING  Y  N  33  
HRK  C30  C29   DOUB  Y  N  34  
HRK  C27  C28   DOUB  Y  N  35  
HRK  C29  C28   SING  Y  N  36  
HRK  C02  H021  SING  N  N  37  
HRK  C03  H031  SING  N  N  38  
HRK  C04  H042  SING  N  N  39  
HRK  C04  H041  SING  N  N  40  
HRK  C07  H071  SING  N  N  41  
HRK  C09  H091  SING  N  N  42  
HRK  C10  H101  SING  N  N  43  
HRK  C12  H121  SING  N  N  44  
HRK  C14  H141  SING  N  N  45  
HRK  C16  H161  SING  N  N  46  
HRK  C17  H172  SING  N  N  47  
HRK  C17  H171  SING  N  N  48  
HRK  C20  H201  SING  N  N  49  
HRK  C22  H221  SING  N  N  50  
HRK  C24  H241  SING  N  N  51  
HRK  C27  H271  SING  N  N  52  
HRK  C28  H281  SING  N  N  53  
HRK  C29  H291  SING  N  N  54  
HRK  C30  H301  SING  N  N  55  
HRK  C31  H311  SING  N  N  56  
HRK  O01  H011  SING  N  N  57  
HRK  O05  H051  SING  N  N  58  
HRK  O11  H111  SING  N  N  59  
HRK  O13  H131  SING  N  N  60  
HRK  O15  H151  SING  N  N  61  
HRK  O18  H181  SING  N  N  62  
HRK  O21  H211  SING  N  N  63  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
HRK  InChI             InChI                 1.03   "InChI=1S/C20H27N3O9S/c24-7-11-14(26)13(23-6-10(21-22-23)9-4-2-1-3-5-9)16(28)19(31-11)33-20-18(30)17(29)15(27)12(8-25)32-20/h1-6,11-20,24-30H,7-8H2/t11-,12-,13+,14+,15-,16-,17+,18-,19+,20+/m1/s1"  
HRK  InChIKey          InChI                 1.03   OARGKFGHNLEIQR-CPMKIQJPSA-N  
HRK  SMILES_CANONICAL  CACTVS                3.385  "OC[C@H]1O[C@@H](S[C@@H]2O[C@H](CO)[C@H](O)[C@@H]([C@H]2O)n3cc(nn3)c4ccccc4)[C@H](O)[C@@H](O)[C@@H]1O"  
HRK  SMILES            CACTVS                3.385  "OC[CH]1O[CH](S[CH]2O[CH](CO)[CH](O)[CH]([CH]2O)n3cc(nn3)c4ccccc4)[CH](O)[CH](O)[CH]1O"  
HRK  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1ccc(cc1)c2cn(nn2)[C@H]3[C@H]([C@H](O[C@H]([C@@H]3O)S[C@H]4[C@@H]([C@H]([C@@H]([C@H](O4)CO)O)O)O)CO)O"  
HRK  SMILES            "OpenEye OEToolkits"  2.0.7  "c1ccc(cc1)c2cn(nn2)C3C(C(OC(C3O)SC4C(C(C(C(O4)CO)O)O)O)CO)O"  
#
_pdbx_chem_comp_identifier.comp_id          HRK
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "(2~{R},3~{S},4~{S},5~{R},6~{S})-2-(hydroxymethyl)-6-[(2~{S},3~{R},4~{S},5~{R},6~{R})-6-(hydroxymethyl)-3,5-bis(oxidanyl)-4-(4-phenyl-1,2,3-triazol-1-yl)oxan-2-yl]sulfanyl-oxane-3,4,5-triol"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
HRK  "Create component"  2019-02-01  RCSB  
HRK  "Initial release"   2019-07-10  RCSB  
##
