data_G4K
# 
_chem_comp.id                                    G4K 
_chem_comp.name                                  Borussertib 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C36 H34 N6 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2018-08-28 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        598.694 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     G4K 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6HHF 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
G4K CAM C1  C 0 1 Y N N N N N 7.538  2.816  18.325 -5.511  -2.734 0.930  CAM G4K 1  
G4K CAN C2  C 0 1 Y N N N N N 8.828  3.258  18.592 -4.838  -3.899 1.236  CAN G4K 2  
G4K CAO C3  C 0 1 Y N N N N N 9.080  4.059  19.699 -3.519  -4.060 0.852  CAO G4K 3  
G4K CAP C4  C 0 1 Y N N N N N 8.035  4.424  20.538 -2.867  -3.055 0.159  CAP G4K 4  
G4K CAQ C5  C 0 1 Y N N N N N 6.745  3.984  20.270 -3.530  -1.886 -0.152 CAQ G4K 5  
G4K CAK C6  C 0 1 Y N N N N N 6.488  3.191  19.157 -4.859  -1.718 0.232  CAK G4K 6  
G4K CAH C7  C 0 1 Y N N N N N 5.176  2.767  18.937 -5.577  -0.464 -0.099 CAH G4K 7  
G4K CAG C8  C 0 1 Y N N N N N 4.543  2.153  20.013 -6.828  -0.510 -0.707 CAG G4K 8  
G4K CAD C9  C 0 1 Y N N N N N 3.240  1.703  19.876 -7.460  0.700  -0.997 CAD G4K 9  
G4K CAC C10 C 0 1 N N N N N N 2.589  1.077  20.932 -8.779  0.752  -1.636 CAC G4K 10 
G4K OBN O1  O 0 1 N N N N N N 3.158  0.908  22.010 -9.361  -0.276 -1.931 OBN G4K 11 
G4K NAB N1  N 0 1 N N N N N N 1.274  0.638  20.763 -9.339  1.951  -1.892 NAB G4K 12 
G4K CAA C11 C 0 1 N N N N N N 0.648  0.810  19.612 -8.719  3.124  -1.577 CAA G4K 13 
G4K CAF C12 C 0 1 N N N N N N 1.280  1.432  18.538 -7.511  3.168  -0.991 CAF G4K 14 
G4K CAE C13 C 0 1 Y N N N N N 2.588  1.882  18.666 -6.818  1.919  -0.670 CAE G4K 15 
G4K NAJ N2  N 0 1 Y N N N N N 3.209  2.481  17.638 -5.624  1.917  -0.090 NAJ G4K 16 
G4K CAI C14 C 0 1 Y N N N N N 4.472  2.932  17.733 -5.001  0.786  0.202  CAI G4K 17 
G4K CAL C15 C 0 1 Y N N N N N 5.023  3.545  16.604 -3.669  0.837  0.849  CAL G4K 18 
G4K CAV C16 C 0 1 Y N N N N N 5.411  4.882  16.622 -2.771  1.853  0.524  CAV G4K 19 
G4K CAU C17 C 0 1 Y N N N N N 5.954  5.476  15.489 -1.532  1.895  1.130  CAU G4K 20 
G4K CAR C18 C 0 1 Y N N N N N 5.175  2.809  15.433 -3.310  -0.129 1.789  CAR G4K 21 
G4K CAS C19 C 0 1 Y N N N N N 5.727  3.406  14.300 -2.071  -0.074 2.392  CAS G4K 22 
G4K CAT C20 C 0 1 Y N N N N N 6.100  4.750  14.314 -1.180  0.931  2.058  CAT G4K 23 
G4K CAW C21 C 0 1 N N N N N N 6.670  5.339  13.180 0.172   0.985  2.720  CAW G4K 24 
G4K NAX N3  N 0 1 N N N N N N 5.791  6.144  12.298 1.136   0.205  1.932  NAX G4K 25 
G4K CBC C22 C 0 1 N N N N N N 4.424  5.592  12.201 2.399   0.037  2.661  CBC G4K 26 
G4K CBB C23 C 0 1 N N N N N N 3.597  6.286  11.127 3.322   -0.899 1.876  CBB G4K 27 
G4K CAY C24 C 0 1 N N N N N N 6.467  6.152  10.983 1.360   0.820  0.617  CAY G4K 28 
G4K CAZ C25 C 0 1 N N N N N N 5.649  6.821  9.888  2.251   -0.092 -0.229 CAZ G4K 29 
G4K CBA C26 C 0 1 N N N N N N 4.328  6.087  9.812  3.586   -0.303 0.491  CBA G4K 30 
G4K NBD N4  N 0 1 N N N N N N 3.497  6.401  8.600  4.422   -1.222 -0.286 NBD G4K 31 
G4K CBE C27 C 0 1 Y N N N N N 3.224  7.451  7.811  5.677   -0.931 -0.816 CBE G4K 32 
G4K CBI C28 C 0 1 Y N N N N N 3.638  8.718  7.822  6.478   0.199  -0.796 CBI G4K 33 
G4K CBH C29 C 0 1 N N N N N N 2.805  5.378  8.123  4.110   -2.492 -0.603 CBH G4K 34 
G4K OBM O2  O 0 1 N N N N N N 2.813  4.244  8.601  3.082   -3.061 -0.288 OBM G4K 35 
G4K NBG N5  N 0 1 N N N N N N 2.110  5.751  7.061  5.108   -3.038 -1.323 NBG G4K 36 
G4K CBF C30 C 0 1 Y N N N N N 2.368  7.039  6.861  6.112   -2.082 -1.477 CBF G4K 37 
G4K CBL C31 C 0 1 Y N N N N N 1.910  7.863  5.920  7.344   -2.092 -2.113 CBL G4K 38 
G4K CBK C32 C 0 1 Y N N N N N 2.307  9.184  5.883  8.139   -0.964 -2.093 CBK G4K 39 
G4K CBJ C33 C 0 1 Y N N N N N 3.185  9.619  6.862  7.710   0.182  -1.432 CBJ G4K 40 
G4K NBO N6  N 0 1 N N N N N N 3.606  10.882 6.891  8.521   1.324  -1.416 NBO G4K 41 
G4K CBP C34 C 0 1 N N N N N N 2.688  11.867 6.877  8.518   2.138  -0.341 CBP G4K 42 
G4K OBR O3  O 0 1 N N N N N N 1.468  11.704 6.843  7.887   1.833  0.649  OBR G4K 43 
G4K CBQ C35 C 0 1 N N N N N N 3.281  13.269 6.938  9.297   3.428  -0.370 CBQ G4K 44 
G4K CBS C36 C 0 1 N N N N N N 2.260  14.412 7.068  9.126   4.157  0.964  CBS G4K 45 
G4K H1  H1  H 0 1 N N N N N N 7.350  2.181  17.472 -6.542  -2.611 1.227  H1  G4K 46 
G4K H2  H2  H 0 1 N N N N N N 9.639  2.978  17.936 -5.342  -4.687 1.776  H2  G4K 47 
G4K H3  H3  H 0 1 N N N N N N 10.085 4.397  19.906 -2.996  -4.973 1.094  H3  G4K 48 
G4K H4  H4  H 0 1 N N N N N N 8.225  5.049  21.398 -1.837  -3.186 -0.137 H4  G4K 49 
G4K H5  H5  H 0 1 N N N N N N 5.936  4.260  20.930 -3.019  -1.102 -0.692 H5  G4K 50 
G4K H6  H6  H 0 1 N N N N N N 5.065  2.028  20.950 -7.296  -1.454 -0.946 H6  G4K 51 
G4K H7  H7  H 0 1 N N N N N N -0.369 0.463  19.502 -9.219  4.053  -1.807 H7  G4K 52 
G4K H8  H8  H 0 1 N N N N N N 0.753  1.565  17.605 -7.055  4.119  -0.757 H8  G4K 53 
G4K H10 H10 H 0 1 N N N N N N 5.289  5.463  17.524 -3.045  2.606  -0.200 H10 G4K 54 
G4K H11 H11 H 0 1 N N N N N N 6.265  6.510  15.522 -0.836  2.681  0.879  H11 G4K 55 
G4K H12 H12 H 0 1 N N N N N N 4.865  1.775  15.402 -4.002  -0.919 2.044  H12 G4K 56 
G4K H13 H13 H 0 1 N N N N N N 5.867  2.822  13.403 -1.790  -0.824 3.117  H13 G4K 57 
G4K H14 H14 H 0 1 N N N N N N 7.094  4.529  12.568 0.506   2.021  2.780  H14 G4K 58 
G4K H15 H15 H 0 1 N N N N N N 7.479  5.999  13.526 0.102   0.568  3.724  H15 G4K 59 
G4K H17 H17 H 0 1 N N N N N N 3.922  5.718  13.171 2.882   1.007  2.780  H17 G4K 60 
G4K H18 H18 H 0 1 N N N N N N 4.491  4.521  11.959 2.197   -0.392 3.643  H18 G4K 61 
G4K H19 H19 H 0 1 N N N N N N 3.508  7.359  11.352 4.265   -1.011 2.410  H19 G4K 62 
G4K H20 H20 H 0 1 N N N N N N 2.594  5.838  11.074 2.846   -1.873 1.769  H20 G4K 63 
G4K H21 H21 H 0 1 N N N N N N 6.663  5.111  10.685 0.403   0.960  0.114  H21 G4K 64 
G4K H22 H22 H 0 1 N N N N N N 7.421  6.691  11.084 1.847   1.786  0.746  H22 G4K 65 
G4K H23 H23 H 0 1 N N N N N N 6.177  6.750  8.925  1.758   -1.054 -0.370 H23 G4K 66 
G4K H24 H24 H 0 1 N N N N N N 5.480  7.879  10.136 2.430   0.371  -1.199 H24 G4K 67 
G4K H25 H25 H 0 1 N N N N N N 4.572  5.016  9.754  4.097   0.654  0.598  H25 G4K 68 
G4K H26 H26 H 0 1 N N N N N N 4.331  9.048  8.582  6.144   1.091  -0.286 H26 G4K 69 
G4K H27 H27 H 0 1 N N N N N N 1.505  5.173  6.513  5.127   -3.943 -1.673 H27 G4K 70 
G4K H28 H28 H 0 1 N N N N N N 1.219  7.493  5.177  7.682   -2.982 -2.623 H28 G4K 71 
G4K H29 H29 H 0 1 N N N N N N 1.946  9.855  5.118  9.098   -0.972 -2.589 H29 G4K 72 
G4K H30 H30 H 0 1 N N N N N N 4.583  11.094 6.922  9.085   1.530  -2.178 H30 G4K 73 
G4K H31 H31 H 0 1 N N N N N N 3.954  13.315 7.806  10.353  3.210  -0.533 H31 G4K 74 
G4K H32 H32 H 0 1 N N N N N N 3.859  13.433 6.017  8.928   4.058  -1.179 H32 G4K 75 
G4K H33 H33 H 0 1 N N N N N N 2.790  15.375 7.103  8.071   4.374  1.126  H33 G4K 76 
G4K H34 H34 H 0 1 N N N N N N 1.582  14.398 6.202  9.496   3.527  1.772  H34 G4K 77 
G4K H35 H35 H 0 1 N N N N N N 1.678  14.280 7.992  9.690   5.090  0.942  H35 G4K 78 
G4K H36 H36 H 0 1 N N N N N N 0.801  0.189  21.521 -10.212 1.980  -2.315 H36 G4K 79 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
G4K CBK CBL DOUB Y N 1  
G4K CBK CBJ SING Y N 2  
G4K CBL CBF SING Y N 3  
G4K OBR CBP DOUB N N 4  
G4K CBF NBG SING N N 5  
G4K CBF CBE DOUB Y N 6  
G4K CBJ NBO SING N N 7  
G4K CBJ CBI DOUB Y N 8  
G4K CBP NBO SING N N 9  
G4K CBP CBQ SING N N 10 
G4K CBQ CBS SING N N 11 
G4K NBG CBH SING N N 12 
G4K CBE CBI SING Y N 13 
G4K CBE NBD SING N N 14 
G4K CBH NBD SING N N 15 
G4K CBH OBM DOUB N N 16 
G4K NBD CBA SING N N 17 
G4K CBA CAZ SING N N 18 
G4K CBA CBB SING N N 19 
G4K CAZ CAY SING N N 20 
G4K CAY NAX SING N N 21 
G4K CBB CBC SING N N 22 
G4K CBC NAX SING N N 23 
G4K NAX CAW SING N N 24 
G4K CAW CAT SING N N 25 
G4K CAS CAT DOUB Y N 26 
G4K CAS CAR SING Y N 27 
G4K CAT CAU SING Y N 28 
G4K CAR CAL DOUB Y N 29 
G4K CAU CAV DOUB Y N 30 
G4K CAL CAV SING Y N 31 
G4K CAL CAI SING N N 32 
G4K NAJ CAI DOUB Y N 33 
G4K NAJ CAE SING Y N 34 
G4K CAI CAH SING Y N 35 
G4K CAM CAN DOUB Y N 36 
G4K CAM CAK SING Y N 37 
G4K CAF CAE SING N N 38 
G4K CAF CAA DOUB N N 39 
G4K CAN CAO SING Y N 40 
G4K CAE CAD DOUB Y N 41 
G4K CAH CAK SING N N 42 
G4K CAH CAG DOUB Y N 43 
G4K CAK CAQ DOUB Y N 44 
G4K CAA NAB SING N N 45 
G4K CAO CAP DOUB Y N 46 
G4K CAD CAG SING Y N 47 
G4K CAD CAC SING N N 48 
G4K CAQ CAP SING Y N 49 
G4K NAB CAC SING N N 50 
G4K CAC OBN DOUB N N 51 
G4K CAM H1  SING N N 52 
G4K CAN H2  SING N N 53 
G4K CAO H3  SING N N 54 
G4K CAP H4  SING N N 55 
G4K CAQ H5  SING N N 56 
G4K CAG H6  SING N N 57 
G4K CAA H7  SING N N 58 
G4K CAF H8  SING N N 59 
G4K CAV H10 SING N N 60 
G4K CAU H11 SING N N 61 
G4K CAR H12 SING N N 62 
G4K CAS H13 SING N N 63 
G4K CAW H14 SING N N 64 
G4K CAW H15 SING N N 65 
G4K CBC H17 SING N N 66 
G4K CBC H18 SING N N 67 
G4K CBB H19 SING N N 68 
G4K CBB H20 SING N N 69 
G4K CAY H21 SING N N 70 
G4K CAY H22 SING N N 71 
G4K CAZ H23 SING N N 72 
G4K CAZ H24 SING N N 73 
G4K CBA H25 SING N N 74 
G4K CBI H26 SING N N 75 
G4K NBG H27 SING N N 76 
G4K CBL H28 SING N N 77 
G4K CBK H29 SING N N 78 
G4K NBO H30 SING N N 79 
G4K CBQ H31 SING N N 80 
G4K CBQ H32 SING N N 81 
G4K CBS H33 SING N N 82 
G4K CBS H34 SING N N 83 
G4K CBS H35 SING N N 84 
G4K NAB H36 SING N N 85 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
G4K InChI            InChI                1.03  "InChI=1S/C36H34N6O3/c1-2-33(43)38-26-12-13-31-32(20-26)42(36(45)40-31)27-15-18-41(19-16-27)22-23-8-10-25(11-9-23)34-28(24-6-4-3-5-7-24)21-29-30(39-34)14-17-37-35(29)44/h3-14,17,20-21,27H,2,15-16,18-19,22H2,1H3,(H,37,44)(H,38,43)(H,40,45)" 
G4K InChIKey         InChI                1.03  NFXSQFADJLOQHR-UHFFFAOYSA-N                                                                                                                                                                                                                     
G4K SMILES_CANONICAL CACTVS               3.385 "CCC(=O)Nc1ccc2NC(=O)N(C3CCN(CC3)Cc4ccc(cc4)c5nc6C=CNC(=O)c6cc5c7ccccc7)c2c1"                                                                                                                                                                   
G4K SMILES           CACTVS               3.385 "CCC(=O)Nc1ccc2NC(=O)N(C3CCN(CC3)Cc4ccc(cc4)c5nc6C=CNC(=O)c6cc5c7ccccc7)c2c1"                                                                                                                                                                   
G4K SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CCC(=O)Nc1ccc2c(c1)N(C(=O)N2)C3CCN(CC3)Cc4ccc(cc4)c5c(cc6c(n5)C=CNC6=O)c7ccccc7"                                                                                                                                                               
G4K SMILES           "OpenEye OEToolkits" 2.0.6 "CCC(=O)Nc1ccc2c(c1)N(C(=O)N2)C3CCN(CC3)Cc4ccc(cc4)c5c(cc6c(n5)C=CNC6=O)c7ccccc7"                                                                                                                                                               
# 
_pdbx_chem_comp_identifier.comp_id           G4K 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.6 
_pdbx_chem_comp_identifier.identifier        "~{N}-[2-oxidanylidene-3-[1-[[4-(5-oxidanylidene-3-phenyl-6~{H}-1,6-naphthyridin-2-yl)phenyl]methyl]piperidin-4-yl]-1~{H}-benzimidazol-5-yl]propanamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
G4K "Create component" 2018-08-28 EBI  
G4K "Initial release"  2019-03-20 RCSB 
G4K "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            G4K 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               CBS 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
